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News: Ensembl reduced functionality - Monday 20th January

ensembl news service written 2 days ago by Ben_Ensembl • 1.1k

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News: Ensembl reduced functionality, early March

ensembl news service written 4 days ago by Emily_Ensembl ♦ 20k

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Is there any open-source Illumina bacterial genome mapping and annotation website?

software annotation open source mapping service written 12 months ago by bioinf_ukraine • 0 • updated 12 months ago by h.mon ♦ 29k

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Forum: What makes a good bionformatics prediction service from the point of user experience?

server good forum prediction service written 2.2 years ago by aquaq • 20

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Recent Replies

C: missing coeeficients in resultsNames(dds) by Assa Yeroslaviz • 1.2k
This is not true. when I run this: > resMA <- lfcShrink(ddsMat, coef="design_D0_KO_l...
C: Add A New Feature In Biopython by crmjolnir • 0
Thanks for posting the final summary. Seven years later, and it's still relevant and helpful. th...
C: STAR ALIGNMENT: FATAL ERROR in reads input: short read sequence line: 0 by Fabio Marroni • 2.4k
Did you give a look at the sequence of the read `@SRR6657766.4132571`? Maybe this would give an hint
C: PLINK input files from Genome Studio by chrchang523 ♦ 6.3k
Did you ever provide any phenotype information? If so, how?
C: Normalizing NGS samples expected to have different total reads by mbk0asis • 490
I found the a sentence, "It has been proposed that quantile normalization can correct for varying...
C: RNA-seq batch effect remove by RamRS ♦ 25k
Please see https://www.biostars.org/p/309884/ to add your images properly. You need **the direct ...
C: Fast download of FASTQ files from the European Nucleotide Archive (ENA) by O.rka • 150
This is asking for my password yet I've never made a password. How can I get around this? EDIT...
A: How do I generate input data for Circos plot? by metageni • 50
Please check [this][1] and let me know if it helps https://www.biostars.org/p/261155/ [1]: ...
C: Calculate coverage from SAM file by metageni • 50
I see. In this case, I would re-create the original FASTA from the SAM he has (it contains sequen...
A: How to find any GWAS associations my genes have by Kevin Blighe ♦ 53k
There are likely many ways. One way is to download the NHGRI's GWAS Catalog as TSV and then prog...
C: MACS2 --SPMR and --nolambda usage for version 2.1.2 by ATpoint ♦ 28k
Just my two cents: One should use `macs` for what it was originally designed and that is calling ...
C: Calculate coverage from SAM file by ATpoint ♦ 28k
The problem here is that OP has no information about the genome version, it is not about tools.

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