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3
votes
1
answer
105
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1
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Principal component analysis: PC2 contribute more to variance than PC1?
pca principal component analysis seurat written 3 days ago by chilifan • 60 • updated 3 days ago by manuel.belmadani • 450
5
votes
1
answer
64
views
1
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Clusters moving for same dataset and code using tSNE
tsne clustering scrnaseq seurat written 4 days ago by chilifan • 60 • updated 4 days ago by i.sudbery ♦ 3.7k
0
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0
answers
82
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0
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Seurat: Percentage distribution of cells in all clusters based on their treatment condition?
R rna-seq seurat single cell written 11 days ago by charlesgwellem • 0 • updated 10 days ago by Santosh Anand ♦ 4.6k
2
votes
1
answer
96
views
1
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natural log used in Seurat for differential expression
rna-seq seurat differential expression written 13 days ago by nix • 0 • updated 13 days ago by Santosh Anand ♦ 4.6k
1
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0
answers
73
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0
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Seurat on both pooled and unpooled samples
scrna-seq rna-seq seurat written 18 days ago by Kristin Muench • 350 • updated 18 days ago by RamRS ♦ 20k
1
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1
answer
144
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1
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In Seurat, what data is VlnPlot() plotting?
scrna-seq seurat rna-seq single cell written 29 days ago by Kristin Muench • 350
1
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3
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225
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3
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gene counts in Seurat after RunCCA() and AlignSubspace()
scrna-seq seurat cca written 6 weeks ago by Bogdan • 700
4
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2
answers
2.9k
views
11 follow
2
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Finding Variable Genes in Seurat, scRNA-seq
scrna-seq rna-seq seurat written 18 months ago by asyndeton17 • 20 • updated 5 weeks ago by Nitin Sharma • 30
0
votes
0
answers
199
views
0
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Convert loom file to Seurat
loom loomr seurat written 6 weeks ago by mxs1489 • 0
0
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1
answer
221
views
1
answer
How can i control the cluster number in scRNASeq clustering by Seurat package
rna-seq single cell seurat written 7 weeks ago by wenchuan.xie • 0 • updated 7 weeks ago by igor ♦ 7.3k
0
votes
0
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160
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0
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Deconvolution Method in Seurat and convert from SingleCellExperiment
R chip-seq seurat single cell rna-seq written 9 weeks ago by hamza_karakurt • 0
3
votes
2
answers
407
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2
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Analyzing digital gene expression data (DGE) from drop-seq pipeline with Seurat.
R rna-seq seurat written 11 weeks ago by chilifan • 60
0
votes
0
answers
295
views
0
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Error in converting seurat object to anndata class
python seurat rna-seq R written 3 months ago by Duckula • 0 • updated 12 weeks ago by Biostar ♦♦ 20
5
votes
1
answer
322
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1
answer
Seurat Cell Cycle Phase Assignments
rna-seq cell cycle single cell seurat written 3 months ago by ianmw • 30 • updated 3 months ago by kristoffer.vittingseerup • 1.4k
1
vote
1
answer
439
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1
answer
Batch effect correction in DE analysis of single cell RNA-seq data and visualization
scde batch effect limma seurat rna-seq written 3 months ago by Poorya Parvizi • 40 • updated 3 months ago by Praneet Chaturvedi • 100
0
votes
2
answers
998
views
2
answers
CellCycleScoring in Seurat with custom cell-cycle gene list
R seurat rna-seq written 9 months ago by dtatarak • 10 • updated 3 months ago by bg93 • 0
4
votes
1
answer
290
views
1
answer
Connecting clusters of cells in 2 adjacent time points.
urd R adjacency matrix igrap seurat written 4 months ago by F • 3.2k
1
vote
1
answer
337
views
1
answer
Converting a function to work with another package
urd R seurat written 4 months ago by Za • 120
0
votes
0
answers
220
views
0
answers
Showing the expression of a set of genes as 0 , 1 binaries
R featureplot seurat heatmap written 5 months ago by jivarajivaraj • 40 • updated 5 months ago by RamRS ♦ 20k
1
vote
1
answer
504
views
1
answer
how to visualize co-expression of several genes simultaneously in Featureplot (scRNA-seq) in one figure?
scrna featureplot seurat written 5 months ago by biologo • 10 • updated 5 months ago by lehmannnathalie408 • 10
2
votes
1
answer
687
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1
answer
Removing some character from Seurat metadata
software error R cellrouter seurat metadata written 5 months ago by Za • 120 • updated 5 months ago by Santosh Anand ♦ 4.6k
0
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0
answers
191
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0
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How to see how many genes left after filtering with FilterCells and FindVariableGenes/ScaleData in Seurat?
seurat rna-seq written 6 months ago by likyle001 • 0
0
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1
answer
488
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1
answer
Seurat -FindVariableGenes problem
software error seurat findvariablegenes written 6 months ago by hsu • 0
1
vote
1
answer
1.2k
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1
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Why different tSNE plot with Seurat and Monocle if they'r using the same R package?
single-cell R monocle tsne seurat written 8 months ago by jgarces • 0 • updated 8 months ago by dppb05 • 70
1
vote
1
answer
961
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1
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Classify cells using seurat
monocle scrna seurat written 11 months ago by ApoorvaB • 160 • updated 8 months ago by dppb05 • 70
4
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1
answer
1.4k
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1
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Single cell RNA sequencing Seurat and Monocle
seurat cell trajectory rna-seq single cell monocle written 10 months ago by bioinformatics.cancer • 180 • updated 8 months ago by dppb05 • 70
0
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0
answers
392
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0
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Seurat identify clusters associated with two time points in tSNE plot
scrnaseq seurat written 8 months ago by rob.costa1234 • 150
2
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1
answer
985
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1
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Using marker genes to identify cell cluster
scrna-seq findallmarkers rna-seq seurat tsne plot written 9 months ago by Behram Radmanesh • 10
0
votes
1
answer
448
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1
answer
Single-cell cluster : up- vs down-regulated marker genes
single-cell cluster marker genes rna-seq seurat written 11 months ago by PR • 10 • updated 11 months ago by igor ♦ 7.3k
0
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0
answers
544
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0
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Feature to be plotted in Seurat
feature seurat written 14 months ago by ovela77 • 10
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