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<prev • 113 results • page 1 of 4 • next >
6
votes
3
answers
138
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5 follow
3
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using distinct versions of SEURAT on a SLURM cluster
seurat scrnaseq written 9 weeks ago by Bogdan • 970 • updated 21 hours ago by Giovanni M Dall'Olio ♦ 27k
1
vote
1
answer
89
views
5 follow
1
answer
How to understand the multi-sample processing of Seurat?
rna-seq scrnaseq seurat written 4 weeks ago by xiaoguang • 10 • updated 4 days ago by Friederike ♦ 5.4k
2
votes
3
answers
181
views
6 follow
3
answers
scRNA-seq, Seurat: correlation analysis of two replicates
scrna seurat written 8 weeks ago by Gregor Rot • 440 • updated 4 days ago by Friederike ♦ 5.4k
2
votes
1
answer
76
views
1
answer
Skipping Clustering in Seurat
single-cell seurat clustering rna-seq written 17 days ago by suvratha • 40 • updated 16 days ago by jared.andrews07 ♦ 5.3k
1
vote
1
answer
78
views
1
answer
Extract rows with rownames from seurat objects in R?
R seurat written 23 days ago by patel.kru • 10
1
vote
1
answer
79
views
1
answer
Cluster using known marker genes (Seurat)
single cell rnaseq seurat rstudio rnaset written 4 weeks ago by V • 200 • updated 4 weeks ago by Arup Ghosh ♦ 2.3k
3
votes
2
answers
135
views
5 follow
2
answers
Question about logFC while using DESeq2 in Seurat
single-cell deseq2 rna-seq seurat written 4 weeks ago by suvratha • 40
0
votes
0
answers
127
views
0
answers
What's best way to perform sub-clustering in seurat integrate pipeline?
scrna seurat clustering integrate written 6 weeks ago by 623202215 • 10
2
votes
1
answer
232
views
5 follow
1
answer
How to choose method to integrate different patient sample together in Seurat
harmony batch effect scrna seurat integrate written 6 weeks ago by 623202215 • 10
3
votes
3
answers
290
views
3
answers
[SOLVED] How to build a table with gene expression per cell type with Seurat ?
single-cell deconvolution cibersort seurat written 7 weeks ago by Evan • 20
1
vote
0
answers
88
views
0
answers
Legends in FeaturePlot of Seurat Package
R visualization featureplot seurat written 7 weeks ago by valeriaduran18 • 0
0
votes
1
answer
174
views
1
answer
Getting the cells from the clusters Seurat has found
R rna-seq seurat single cell written 11 weeks ago by suvratha • 40 • updated 7 weeks ago by Evan • 20
8
votes
0
answers
183
views
6 follow
0
answers
Is a simple Wilcoxon rank sum test good enough to identify differentially expressed genes?
single-cell R rna-seq seurat written 7 weeks ago by suvratha • 40
4
votes
1
answer
250
views
1
answer
Seurat integration of two datasets - GSE126783
integration seurat written 7 weeks ago by vHelmholtz • 20
2
votes
1
answer
153
views
1
answer
Extracting cells only from one condition (Seurat)
single cell rnaseq R seurat rna-seq written 7 weeks ago by V • 200 • updated 7 weeks ago by jared.andrews07 ♦ 5.3k
4
votes
3
answers
158
views
3
answers
Error: unexpected '}' in " }" in R codes of Seurat
R seurat written 8 weeks ago by vHelmholtz • 20 • updated 8 weeks ago by noorpratap.singh • 290
0
votes
1
answer
264
views
1
answer
Moving data from Seurat to ScanPy
single-cell R seurat scanpy python written 9 weeks ago by rmf • 920 • updated 9 weeks ago by khorms • 50
0
votes
0
answers
232
views
0
answers
analysis of multiple time points * 2 replicates of scRNA-seq
scrna-seq liger seurat written 9 weeks ago by Bogdan • 970
3
votes
1
answer
229
views
1
answer
Seurat heatmap across conditions
single-cell rnaseq seurat written 10 weeks ago by V • 200 • updated 10 weeks ago by Arup Ghosh ♦ 2.3k
0
votes
0
answers
116
views
0
answers
Linking SEURAT to DiffusionMAP
scrna-seq rna-seq seurat written 10 weeks ago by Morris_Chair • 170
1
vote
0
answers
184
views
0
answers
markers to define a cell population in a single UMAP
scrna-seq rna-seq seurat written 11 weeks ago by Morris_Chair • 170
5
votes
3
answers
1.1k
views
3
answers
Convert a Seurat object to .h5ad file
single-cell R rna-seq seurat scanpy written 7 months ago by gaelgarcia05 • 200 • updated 12 weeks ago by mmfiruleva • 10
4
votes
0
answers
479
views
0
answers
How to scale data for scater plotHeatmap function similar to Seurat?
scater scrnaseq seurat heatmap written 5 months ago by TJ • 40 • updated 3 months ago by Biostar ♦♦ 20
3
votes
1
answer
402
views
1
answer
Finding All Genes (Differential or Not) in Seurat's FindAllMarkers
seurat gsea written 3 months ago by bioinformatics2020 • 60
0
votes
0
answers
205
views
0
answers
Seurat Cluster Low MT Genes
single-cell seurat written 3 months ago by bioinformatics2020 • 60
0
votes
1
answer
235
views
1
answer
Seurat QC Metrics For Each Cluster and Cluster Composition
single cell seurat written 3 months ago by hamindigoblue • 0 • updated 3 months ago by igor ♦ 9.8k
1
vote
1
answer
177
views
1
answer
Summing data from 3 different parts of an R object at once
R scrna seq seurat written 5 months ago by cook.675 • 10 • updated 3 months ago by Biostar ♦♦ 20
4
votes
1
answer
482
views
1
answer
Unable to load Seurat in R-studio (anaconda)
anaconda r-studio anaconda-navigator seurat written 4 months ago by V • 200
0
votes
1
answer
242
views
1
answer
FindAllMarkers pct1 and pct2
rna-seq seurat written 4 months ago by Morris_Chair • 170 • updated 4 months ago by jared.andrews07 ♦ 5.3k
0
votes
0
answers
324
views
0
answers
Examination of data matrix from CITE-seq-counts
rna-seq seurat written 5 months ago by cook.675 • 10 • updated 4 months ago by Biostar ♦♦ 20
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