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<prev • 22 results • page 1 of 1 • next >
2
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Analyzing digital gene expression data (DGE) from drop-seq pipeline with Seurat.
R rna-seq seurat written 15 days ago by berghannaf • 0
0
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0
answers
162
views
0
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Error in converting seurat object to anndata class
python seurat rna-seq R written 5 weeks ago by Duckula • 0 • updated 21 days ago by Biostar ♦♦ 20
5
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1
answer
131
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1
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Seurat Cell Cycle Phase Assignments
rna-seq cell cycle single cell seurat written 29 days ago by ianmw • 30 • updated 28 days ago by kristoffer.vittingseerup • 1.0k
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1
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196
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1
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Batch effect correction in DE analysis of single cell RNA-seq data and visualization
scde batch effect limma seurat rna-seq written 6 weeks ago by Poorya Parvizi • 40 • updated 6 weeks ago by Praneet Chaturvedi • 100
0
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2
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782
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CellCycleScoring in Seurat with custom cell-cycle gene list
R seurat rna-seq written 7 months ago by dtatarak • 10 • updated 6 weeks ago by bg93 • 0
4
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1
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221
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1
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Connecting clusters of cells in 2 adjacent time points.
urd R adjacency matrix igrap seurat written 9 weeks ago by F • 3.1k
1
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1
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243
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1
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Converting a function to work with another package
urd R seurat written 11 weeks ago by Za • 120
0
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0
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185
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0
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Showing the expression of a set of genes as 0 , 1 binaries
R featureplot seurat heatmap written 3 months ago by jivarajivaraj • 40 • updated 3 months ago by RamRS ♦ 19k
1
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1
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317
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1
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how to visualize co-expression of several genes simultaneously in Featureplot (scRNA-seq) in one figure?
scrna featureplot seurat written 3 months ago by biologo • 10 • updated 3 months ago by lehmannnathalie408 • 10
2
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1
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466
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1
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Removing some character from Seurat metadata
software error R cellrouter seurat metadata written 3 months ago by Za • 120 • updated 3 months ago by Santosh Anand • 4.3k
0
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0
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125
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How to see how many genes left after filtering with FilterCells and FindVariableGenes/ScaleData in Seurat?
seurat rna-seq written 4 months ago by likyle001 • 0
0
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1
answer
334
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1
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Seurat -FindVariableGenes problem
software error seurat findvariablegenes written 4 months ago by hsu • 0
1
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1
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880
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1
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Why different tSNE plot with Seurat and Monocle if they'r using the same R package?
single-cell R monocle tsne seurat written 5 months ago by jgarces • 0 • updated 5 months ago by dppb05 • 70
1
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1
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768
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1
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Classify cells using seurat
monocle scrna seurat written 9 months ago by ApoorvaB • 150 • updated 5 months ago by dppb05 • 70
4
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1
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1.2k
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1
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Single cell RNA sequencing Seurat and Monocle
seurat cell trajectory rna-seq single cell monocle written 8 months ago by bioinformatics.cancer • 180 • updated 6 months ago by dppb05 • 70
0
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0
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317
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0
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Seurat identify clusters associated with two time points in tSNE plot
scrnaseq seurat written 6 months ago by rob.costa1234 • 150
4
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1
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2.4k
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10 follow
1
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Finding Variable Genes in Seurat, scRNA-seq
scrna-seq rna-seq seurat written 16 months ago by asyndeton17 • 20 • updated 7 months ago by PaulG • 0
1
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0
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759
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0
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Using marker genes to identify cell cluster
scrna-seq findallmarkers rna-seq seurat tsne plot written 7 months ago by Behram Radmanesh • 0
0
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1
answer
388
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1
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Single-cell cluster : up- vs down-regulated marker genes
single-cell cluster marker genes rna-seq seurat written 9 months ago by PR • 10 • updated 9 months ago by igor ♦ 7.1k
0
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0
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469
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Feature to be plotted in Seurat
feature seurat written 12 months ago by ovela77 • 10
2
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2
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2.9k
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5 follow
2
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Making a 3d tSNE Plot in Seurat for scRNA-seq
scrna-seq tsne rna-seq seurat written 15 months ago by asyndeton17 • 20 • updated 13 months ago by garyhokawai • 30
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0
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682
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Comparing genes expression across samples in single cell RNA sequencing.
scrna rna-seq seurat written 14 months ago by halo22 • 120
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