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<prev • 163 results • page 1 of 6 • next >
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74
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single cell ATAC-seq cicero gene activities in Seurat
single-cell scatacseq cicero seurat R written 3 days ago by el24 • 10
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93
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0
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Conserved markers between clusters (not between stim/exp etc)
R seurat conserved markers written 5 days ago by jennifer.bridge8 • 0
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2
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470
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2
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FindAllMarkers pct1 and pct2
rna-seq seurat written 8 months ago by Morris_Chair • 190 • updated 4 days ago by pnrmm • 0
2
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1
answer
113
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1
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Seurat :Violin plot showing relative expression of select differentially expressed genes
violin rna-seq seurat plot written 6 days ago by David_emir • 370 • updated 6 days ago by ivivek_ngs • 5.0k
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1
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86
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1
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single cell RNA analysis
scrna-seq sctransform memory seurat written 7 days ago by re_raz • 0 • updated 7 days ago by rpolicastro • 380
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1
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79
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1
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Complexity of gene expression in scRNA-seq data
single-cell seurat written 7 days ago by kinalimeric • 20 • updated 7 days ago by rpolicastro • 380
2
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1
answer
126
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1
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Manually logging TPM count matrix in Seurat
seurat written 10 days ago by ww22runner • 0 • updated 9 days ago by rpolicastro • 380
2
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1
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142
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1
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Seurat Clustering - Cluster Numbers from 1 instead of 0
cluster numbering rna-seq seurat written 12 days ago by David_emir • 370 • updated 12 days ago by rpolicastro • 380
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1
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98
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1
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reached iteration limit in SCTransform
sctransform rna-seq seurat written 14 days ago by re_raz • 0 • updated 14 days ago by genomax ♦ 87k
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93
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Is it possible to determine if cells are clustered by samples and not by cell types?
single-cell rna-seq seurat sample variation written 5 weeks ago by singcell • 0 • updated 20 days ago by Biostar ♦♦ 20
0
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1
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446
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1
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Distance matrix for monocle and seurat object
single cell rna monocle seurat written 9 months ago by rprog008 • 70 • updated 20 days ago by abbie.ireland • 0
2
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0
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92
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0
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Read in UMI count table from GEO for use in Seurat pipeline
R seurat written 21 days ago by pv6077 • 0
6
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2
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135
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8 follow
2
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Cluster sub-set analysis using Seurat
single-cell seurat written 23 days ago by singcell • 0 • updated 23 days ago by igor ♦ 11k
1
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110
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Difference between Seurat standard integration workflow and Seurat reference-based integration
scrna-seq reference-based integration seurat written 26 days ago by mvis1231 • 20
3
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1
answer
357
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1
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Running scVelo on Seurat
singlecell velocity rna-seq seurat written 10 weeks ago by V • 230 • updated 27 days ago by Basil Khuder • 20
2
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1
answer
380
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5 follow
1
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Reading in H5AD File from Human Cell Atlas
single-cell R rna-seq seurat h5ad written 9 weeks ago by Thorerges • 0 • updated 27 days ago by shohan4me • 0
3
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1
answer
103
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1
answer
Re-arrange conditions in Seurat
rnaseq seurat written 4 weeks ago by V • 230 • updated 28 days ago by antonioggsousa • 830
3
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2
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159
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2
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Deterimining overall number of differentially expressed genes between WT and KO samples
scrna-seq findmarkers seurat deg written 4 weeks ago by singcell • 0
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0
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64
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0
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Seurat3 DimPlot inconsistency
seurat3 rna-seq seurat written 4 weeks ago by mbk0asis • 550
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1
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100
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1
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subsetting seurat object with multiple samples
scrna-seq seurat written 4 weeks ago by Assa Yeroslaviz • 1.3k • updated 4 weeks ago by jared.andrews07 ♦ 6.4k
3
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1
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148
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1
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QC metrics for each dataset in Seurat for scRNA-seq
scrna-seq qc seurat written 5 weeks ago by mvis1231 • 20 • updated 5 weeks ago by jared.andrews07 ♦ 6.4k
2
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3
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168
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5 follow
3
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Remove ensembl identifiers from Seurat
seurat rstudio rna-seq written 5 weeks ago by V • 230 • updated 5 weeks ago by jared.andrews07 ♦ 6.4k
1
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1
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104
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1
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Relative variance in PCA of scaled data of scRNA-Seq
variance scrna-seq pca seurat written 5 weeks ago by jomo018 • 610
0
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1
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96
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1
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scRNASeq of rare heterogenous population with weak response
scrna-seq single nuclei seq trajectories seurat written 6 weeks ago by frymor2 • 0
3
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0
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105
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0
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What are the differences between the Seurat v3 clustering algorithms?
scrna-seq R seurat written 6 weeks ago by jrleary • 120
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120
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0
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Can I manually add nCount_RNA & nFeature_RNA to a converted Seurat object?
scrna-seq R seurat written 6 weeks ago by jrleary • 120
1
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1
answer
168
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1
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GSVA analysis between Clusters
gsva single cell seurat written 6 weeks ago by David_emir • 370 • updated 6 weeks ago by khorms • 130
1
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1
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1.1k
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1
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appending information to seurat object meta.data
scrna seurat written 8 months ago by cook.675 • 40 • updated 7 weeks ago by atakanekiz • 250
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1
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121
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1
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Identifying appearance or disappearance of cell populations between WT and Mut single cell RNA-Seq data
single cell rna-seq seurat written 7 weeks ago by Apoorva • 250 • updated 7 weeks ago by igor ♦ 11k
2
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163
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0
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Can I use seurat to analyze the data after MNNs batch normalized?
single-cell sequencing seurat batch normalized written 7 weeks ago by jiandan123 • 0
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