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<prev • 209 results • page 1 of 7 • next >
3
votes
1
answer
57
views
1
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Doublet in scRNA-seq
R rna-seq seurat written 1 day ago by roberts • 30
1
vote
1
answer
38
views
1
answer
Removing RBC contamination in Seurat
R seurat rna-seq written 1 day ago by roberts • 30 • updated 1 day ago by jared.andrews07 ♦ 7.6k
1
vote
0
answers
50
views
0
answers
Cross-specie Integration Using Seurat
R seurat written 1 day ago by manishaB • 0
0
votes
0
answers
27
views
0
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In Seurat, how do you decide the cutoff for nFeature_RNA?
scrna-seq R seurat written 1 day ago by jvbeltran0122 • 0
1
vote
1
answer
40
views
1
answer
Multi-group DE scRNA-seq comps without replicates
scrna-seq deseq2 seurat rna-seq written 2 days ago by LacquerHed • 0 • updated 1 day ago by khorms • 150
3
votes
1
answer
58
views
1
answer
error in installing Seurat V. 4
R seurat written 3 days ago by roberts • 30
1
vote
0
answers
59
views
0
answers
Seurat DESeq2 interaction terms
deseq2 rna-seq seurat written 3 days ago by LacquerHed • 0
2
votes
1
answer
55
views
1
answer
Seurat - label cells in cluster plot by transcripts per cell
single-cell cluster labelling seurat rna-seq written 3 days ago by camerond • 150 • updated 3 days ago by rpolicastro • 2.1k
0
votes
0
answers
61
views
0
answers
How to deal with single nucleus data in Seurat
single nucleus rna sequencing rna-seq seurat written 8 days ago by bellymountain • 0
2
votes
0
answers
134
views
0
answers
Color code samples
R seurat rna-seq written 4 weeks ago by roberts • 30 • updated 8 days ago by Biostar ♦♦ 20
3
votes
1
answer
77
views
1
answer
Finding Subclusters in Seurat Clusters
cluster scrnaseq subcluster seurat written 10 days ago by fouerghi20 • 10 • updated 9 days ago by jared.andrews07 ♦ 7.6k
0
votes
0
answers
65
views
0
answers
What format should a dataframe be in to use the AddMetaData function in Seurat?
scrna-seq R seurat rna-seq written 13 days ago by Pratik Mehta • 30
2
votes
0
answers
71
views
0
answers
Quantification of cell cluster in Single cell data
wilcoxon rna-seq single cell seurat written 14 days ago by David_emir • 380
4
votes
1
answer
105
views
1
answer
Adding UMAP coordinates to metadata
R seurat written 15 days ago by roberts • 30 • updated 15 days ago by fracarb8 • 50
0
votes
0
answers
84
views
0
answers
mitochondria in single nuclear RNAseq
snrnaseq single cell rnaseq scrnaseq seurat written 21 days ago by Rahul Tyagi • 0
2
votes
1
answer
118
views
1
answer
Differentially expressed genes between Seurat objects
seurat differential gene expression rna-seq written 21 days ago by lic4010 • 0 • updated 21 days ago by jared.andrews07 ♦ 7.6k
0
votes
0
answers
130
views
0
answers
Mapping clonotypes on UMAP
R vdj seurat rna-seq written 26 days ago by ecl75 • 0
0
votes
0
answers
100
views
0
answers
Mapping clonotypes on UMAP
R clonotype rna-seq umap seurat written 27 days ago by roberts • 30
0
votes
1
answer
157
views
1
answer
differential expression from sc RNA seq
de seurat scrna -seq written 10 weeks ago by re_raz • 0 • updated 28 days ago by erdoganperkan • 0
1
vote
1
answer
157
views
1
answer
TCR analysis in Suerat
10x R tcr rna-seq seurat written 4 weeks ago by roberts • 30 • updated 4 weeks ago by jared.andrews07 ♦ 7.6k
3
votes
1
answer
125
views
1
answer
Single-cell Datasets Integration
single cell data integration seurat written 4 weeks ago by manishaB • 0 • updated 4 weeks ago by jared.andrews07 ♦ 7.6k
1
vote
1
answer
115
views
1
answer
cluster identification in seurat
scrna-seq R seurat written 4 weeks ago by roberts • 30 • updated 4 weeks ago by jared.andrews07 ♦ 7.6k
0
votes
0
answers
154
views
0
answers
PHATE Clustering Error
scrna-seq seurat phate error single cell written 4 weeks ago by fouerghi20 • 10 • updated 4 weeks ago by genomax ♦ 91k
2
votes
1
answer
120
views
1
answer
Two different library preps
10x R seurat rna-seq written 4 weeks ago by roberts • 30 • updated 4 weeks ago by swbarnes2 ♦ 8.9k
5
votes
2
answers
231
views
2
answers
Consistency of Seurat SCTransform across computers/environments
seurat written 6 weeks ago by Bastien Hervé ♦ 4.8k
0
votes
0
answers
91
views
0
answers
pulling out TCR data
R tcr vdj seurat rna-seq written 5 weeks ago by roberts • 30
2
votes
1
answer
144
views
1
answer
Running PHATE on Seurat Object
scrnaseq seurat phate written 5 weeks ago by fouerghi20 • 10 • updated 5 weeks ago by jared.andrews07 ♦ 7.6k
0
votes
0
answers
114
views
0
answers
Using dropEst output for Seurat
dropest rds files seurat written 5 weeks ago by annadv • 0
0
votes
0
answers
187
views
0
answers
SCTransform prior or after merging samples into one object?
merging samples seurat scrnaseq written 5 weeks ago by annadv • 0
2
votes
1
answer
148
views
1
answer
How to read a dataframe into Seurat for AddMetaData properly?
R seurat rna-seq written 5 weeks ago by Pratik Mehta • 30 • updated 5 weeks ago by swbarnes2 ♦ 8.9k
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