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2
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73
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using distinct versions of SEURAT on a SLURM cluster
seurat scrnaseq written 1 day ago by Bogdan • 910
0
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0
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61
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0
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analysis of multiple time points * 2 replicates of scRNA-seq
scrna-seq liger seurat written 1 day ago by Bogdan • 910
1
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1
answer
73
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1
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Seurat heatmap across conditions
single-cell rnaseq seurat written 6 days ago by V • 200 • updated 6 days ago by arup • 1.9k
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0
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53
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0
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Linking SEURAT to DiffusionMAP
scrna-seq rna-seq seurat written 10 days ago by Morris_Chair • 170
1
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0
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109
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0
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markers to define a cell population in a single UMAP
scrna-seq rna-seq seurat written 12 days ago by Morris_Chair • 170
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66
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0
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Getting the cells from the clusters Seurat has found
R rna-seq seurat single cell written 14 days ago by suvratha • 20
5
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3
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750
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3
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Convert a Seurat object to .h5ad file
single-cell R rna-seq seurat scanpy written 5 months ago by gaelgarcia05 • 200 • updated 19 days ago by mmfiruleva • 10
4
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0
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337
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0
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How to scale data for scater plotHeatmap function similar to Seurat?
scater scrnaseq seurat heatmap written 12 weeks ago by TJ • 40 • updated 5 weeks ago by Biostar ♦♦ 20
1
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1
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146
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1
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Finding All Genes (Differential or Not) in Seurat's FindAllMarkers
seurat gsea written 5 weeks ago by bioinformatics2020 • 30
0
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0
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137
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0
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Seurat Cluster Low MT Genes
single-cell seurat written 6 weeks ago by bioinformatics2020 • 30
0
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1
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130
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1
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Seurat QC Metrics For Each Cluster and Cluster Composition
single cell seurat written 7 weeks ago by hamindigoblue • 0 • updated 7 weeks ago by igor ♦ 9.2k
1
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1
answer
154
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1
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Summing data from 3 different parts of an R object at once
R scrna seq seurat written 3 months ago by cook.675 • 10 • updated 7 weeks ago by Biostar ♦♦ 20
4
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1
answer
258
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1
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Unable to load Seurat in R-studio (anaconda)
anaconda r-studio anaconda-navigator seurat written 8 weeks ago by V • 200
0
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1
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166
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1
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FindAllMarkers pct1 and pct2
rna-seq seurat written 8 weeks ago by Morris_Chair • 170 • updated 8 weeks ago by jared.andrews07 • 4.3k
0
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253
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0
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Examination of data matrix from CITE-seq-counts
rna-seq seurat written 3 months ago by cook.675 • 10 • updated 9 weeks ago by Biostar ♦♦ 20
4
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2
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224
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2
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Rename cells in Seurat
single cell rnaseq R seurat rna-seq written 9 weeks ago by V • 200
0
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1
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112
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1
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How to combine seperate seurat meta.data ID;s into one column?
scrna seurat written 9 weeks ago by cook.675 • 10 • updated 9 weeks ago by RamRS ♦ 25k
0
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0
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112
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0
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appending information to seurat object meta.data
scrna seurat written 9 weeks ago by cook.675 • 10
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1
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499
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1
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subsetting out cells from seurat object based on expression of 1 gene
R seurat written 12 weeks ago by cook.675 • 10 • updated 10 weeks ago by jared.andrews07 • 4.3k
0
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0
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159
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0
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Picking PCs with SCTransform (in Seurat)
single-cell rna-seq sctransform seurat written 10 weeks ago by bioinformatics2020 • 30
8
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0
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1.5k
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6 follow
0
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Tutorial: Integrating VDJ sequencing data with Seurat
clonotyping vdj sc-rnaseq tutorial seurat written 7 months ago by atakanekiz • 180
2
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1
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190
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1
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For CreateSeuratObject, Where Do the Values for min.cells and min.features come from?
R seurat sc-rna-seq written 11 weeks ago by bioinformatics2020 • 30 • updated 11 weeks ago by jared.andrews07 • 4.3k
3
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1
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473
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1
answer
In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
single-cell seurat written 11 weeks ago by bioinformatics2020 • 30 • updated 11 weeks ago by jared.andrews07 • 4.3k
4
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2
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229
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2
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Seurat sctransform return.only.var.genes = FALSE
scrna-seq sctransform seurat written 11 weeks ago by Lucy • 40 • updated 11 weeks ago by jared.andrews07 • 4.3k
3
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1
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118
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1
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SC-RNA Seq Analysis tutorials
singlecell sc analysis seurat written 11 weeks ago by sambunga094 • 0 • updated 11 weeks ago by jared.andrews07 • 4.3k
2
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1
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377
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1
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Confusion about FindMarkers(), FindVariableFeatures(), RunTSNE(), and RunUMAP() in seurat package
scrna-seq kallisto|bustools seurat written 11 weeks ago by F. Golestan • 50 • updated 11 weeks ago by jared.andrews07 • 4.3k
0
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0
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182
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0
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Distance matrix for monocle and seurat object
single cell rna monocle seurat written 12 weeks ago by rprog008 • 50
11
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3
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4.8k
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10 follow
3
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Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
R monocle seurat pseudotime rna-seq written 7 months ago by hkarakurt • 80 • updated 3 months ago by yaleliu73 • 0
1
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1
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183
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1
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Differential-expression analysis using logistic regression in Seurat - glm.fit warning message
scrna-seq differential-expression analysis seurat written 3 months ago by Lucy • 40 • updated 3 months ago by jared.andrews07 • 4.3k
0
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1
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297
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1
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How to concurrently filter RNA and CITEseq data within seurat object
scrna seurat written 3 months ago by cook.675 • 10
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