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<prev • 42 results • page 1 of 2 • next >
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Tutorial: Integrating VDJ sequencing data with Seurat
clonotyping vdj sc-rnaseq tutorial seurat written 5 days ago by atakanekiz • 130
2
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1
answer
166
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1
answer
Tutorial: Associating VDJ clonotyping data with scRNA-seq in Seurat
tcr rna-seq tutorial single cell seurat written 14 days ago by jared.andrews07 • 2.5k • updated 5 days ago by atakanekiz • 130
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130
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Tool: Single cell rnaseq analysis pipeline available
chromium10x scrna seurat scrnaseq tool written 6 days ago by Mamta • 440
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3
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4.5k
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6 follow
3
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Making a 3d tSNE Plot in Seurat for scRNA-seq
scrna-seq tsne rna-seq seurat written 22 months ago by asyndeton17 • 20 • updated 23 days ago by DrAcula • 0
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223
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Batch effect and CCA
cca rna-seq seurat batch effect written 11 weeks ago by akivab2 • 100 • updated 4 weeks ago by Biostar ♦♦ 20
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1
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226
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5 follow
1
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Strange MT% in 10X scRNA-seq data analysis
10x scrna-seq mt% seurat written 7 weeks ago by maria2019 • 30 • updated 6 weeks ago by ATpoint ♦ 18k
0
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2
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234
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2
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Cannot read loom file in scanpy
single-cell loom seurat written 10 weeks ago by Batu • 150
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2
answers
699
views
2
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Convert loom file to Seurat
loom loomr seurat written 5 months ago by mxs1489 • 0 • updated 11 weeks ago by Assa Yeroslaviz • 1.2k
1
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297
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(Single-cell RNA seq; R - Seurat) Re-clustering after removing cells using SubsetData
single-cell R rna-seq seurat written 12 weeks ago by vmallett • 10
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193
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How to use monocle to import a loom file?
R monocle rna-seq seurat written 3 months ago by yuhongruoyi • 10
2
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2
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287
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2
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Delete custom additional column from Seurat metadata
R rna-seq seurat written 3 months ago by yuhongruoyi • 10 • updated 3 months ago by Friederike ♦ 4.2k
2
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1
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605
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1
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Seurat object can't be imported into monocle:the object type you want to export to is not supported yet
R monocle seurat single cell rna-seq written 4 months ago by yuhongruoyi • 10 • updated 3 months ago by lina.kroehling • 20
3
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1
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344
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1
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Principal component analysis: PC2 contribute more to variance than PC1?
pca principal component analysis seurat written 4 months ago by chilifan • 70 • updated 4 months ago by manuel.belmadani • 860
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1
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306
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1
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Clusters moving for same dataset and code using tSNE
tsne clustering scrnaseq seurat written 4 months ago by chilifan • 70 • updated 4 months ago by i.sudbery ♦ 4.8k
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230
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Seurat: Percentage distribution of cells in all clusters based on their treatment condition?
R rna-seq seurat single cell written 4 months ago by charlesgwellem • 0 • updated 4 months ago by Santosh Anand ♦ 4.8k
4
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1
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412
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1
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natural log used in Seurat for differential expression
rna-seq seurat differential expression written 4 months ago by nix • 0 • updated 4 months ago by Santosh Anand ♦ 4.8k
1
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187
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0
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Seurat on both pooled and unpooled samples
scrna-seq rna-seq seurat written 4 months ago by Kristin Muench • 410 • updated 4 months ago by RamRS ♦ 22k
1
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1
answer
642
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1
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In Seurat, what data is VlnPlot() plotting?
scrna-seq seurat rna-seq single cell written 5 months ago by Kristin Muench • 410
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3
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616
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3
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gene counts in Seurat after RunCCA() and AlignSubspace()
scrna-seq seurat cca written 5 months ago by Bogdan • 800
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2
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3.9k
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11 follow
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Finding Variable Genes in Seurat, scRNA-seq
scrna-seq rna-seq seurat written 22 months ago by asyndeton17 • 20 • updated 5 months ago by Nitin Sharma • 30
0
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1
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899
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1
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How can i control the cluster number in scRNASeq clustering by Seurat package
rna-seq single cell seurat written 5 months ago by wenchuan.xie • 0 • updated 5 months ago by igor ♦ 7.7k
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375
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Deconvolution Method in Seurat and convert from SingleCellExperiment
R chip-seq seurat single cell rna-seq written 6 months ago by hamza_karakurt • 0
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2
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1.0k
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Analyzing digital gene expression data (DGE) from drop-seq pipeline with Seurat.
R rna-seq seurat written 6 months ago by chilifan • 70
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514
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0
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Error in converting seurat object to anndata class
python seurat rna-seq R written 7 months ago by Duckula • 20 • updated 6 months ago by Biostar ♦♦ 20
5
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1
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726
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1
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Seurat Cell Cycle Phase Assignments
rna-seq cell cycle single cell seurat written 7 months ago by ianmw • 30 • updated 7 months ago by kristoffer.vittingseerup • 1.8k
2
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1
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916
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1
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Batch effect correction in DE analysis of single cell RNA-seq data and visualization
scde batch effect limma seurat rna-seq written 7 months ago by Poorya Parvizi • 40 • updated 7 months ago by Praneet Chaturvedi • 120
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1.4k
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2
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CellCycleScoring in Seurat with custom cell-cycle gene list
R seurat rna-seq written 13 months ago by dtatarak • 10 • updated 7 months ago by bg93 • 0
4
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1
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424
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1
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Connecting clusters of cells in 2 adjacent time points.
urd R adjacency matrix igrap seurat written 8 months ago by F • 3.4k
1
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1
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517
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1
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Converting a function to work with another package
urd R seurat written 8 months ago by Za • 120
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329
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0
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Showing the expression of a set of genes as 0 , 1 binaries
R featureplot seurat heatmap written 9 months ago by jivarajivaraj • 40 • updated 9 months ago by RamRS ♦ 22k
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