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<prev • 248 results • page 1 of 9 • next >
0
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2
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142
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2
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Shiny board with seurat object
shiny seurat written 7 weeks ago by Dataminer • 2.7k • updated 2 hours ago by Apoorva • 270
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24
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0
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Error :[[<- defined for objects of type "S4" only for subclasses of environment - Shiny App error
single cell rnaseq shiny seurat written 4 hours ago by Apoorva • 270
2
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0
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101
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0
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How to determine SC-RNA-SEQ QC filter thresholds in Seurat?
R rna-seq seurat written 7 days ago by dlmatera • 10
1
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0
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109
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0
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Why did I get very poor scRNAseq files through STARSolo, Galaxy.
scrna-seq R galaxy seurat starsolo written 7 days ago by Youyy • 0
0
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1
answer
107
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1
answer
Normalization before or after merging the samples in Seurat
single cell batch effect correction seurat written 8 days ago by fouerghi20 • 30 • updated 8 days ago by jared.andrews07 ♦ 8.3k
1
vote
1
answer
75
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1
answer
How to choose the number of PCs for a large Seurat Object
scrna seq seurat written 9 days ago by parvathi.sudha • 20 • updated 9 days ago by rpolicastro ♦ 3.2k
4
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1
answer
79
views
1
answer
Is it worth it to explore outside of Seurat?
single cell seurat written 10 days ago by fouerghi20 • 30 • updated 10 days ago by ATpoint ♦ 44k
5
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2
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4.2k
views
6 follow
2
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Analyzing digital gene expression data (DGE) from drop-seq pipeline with Seurat.
R rna-seq seurat written 2.2 years ago by chilifan • 80 • updated 14 days ago by ektavpathak • 0
0
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1
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88
views
1
answer
FIltering Seurat clusters
10x R rna-seq seurat written 15 days ago by roberts • 30 • updated 15 days ago by rpolicastro ♦ 3.2k
1
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0
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155
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0
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Duplicated row names on Seurat
ccle seurat scrnaseq single cell written 5 weeks ago by fouerghi20 • 30 • updated 15 days ago by Biostar ♦♦ 20
2
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0
answers
189
views
0
answers
Seurat to Dataframe with ONLY counts, cells, and cluster labels?
R rna-seq seurat written 17 days ago by Kind Katydid • 0
0
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0
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101
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0
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How can I run DESingle like Seurat's "FindAllMarkers"?
R desingle seurat rna-seq written 17 days ago by Kind Katydid • 0
0
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0
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68
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0
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FeaturePlot on a KDE Plot/density plot
R single cell seurat rna-seq written 17 days ago by fouerghi20 • 30
4
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2
answers
1.9k
views
5 follow
2
answers
Seurat integration of two datasets - GSE126783
integration seurat written 11 months ago by vHelmholtz • 20 • updated 18 days ago by mc2548 • 30
1
vote
1
answer
175
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1
answer
How to use DEGs file for GSEA?
scrna-seq gsea rna-seq seurat written 19 days ago by biostarukha • 10 • updated 19 days ago by rpolicastro ♦ 3.2k
0
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0
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77
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0
answers
Performing integration analysis of two datasets of different sizes in Seurat
scrnaseq seurat written 23 days ago by aa123 • 0
0
votes
1
answer
124
views
1
answer
Using seurat FindClusters on the tSNE embeddings
R tsne rna-seq seurat written 24 days ago by themangoscholar • 0 • updated 24 days ago by igor ♦ 12k
0
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0
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86
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0
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Comparing control vs treatment for 10x Multiome (RNA + ATAC) datasets
sc rnaseq seurat written 24 days ago by mc2548 • 30
0
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0
answers
95
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0
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Seurat merge differing number of rows
seurat written 4 weeks ago by demoraesdiogo2017 • 40 • updated 27 days ago by Biostar ♦♦ 20
0
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0
answers
145
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0
answers
Negbinom vs. logistic regression for Seurat FindMarkers()
scrna-seq rna-seq seurat written 6 weeks ago by Lucy • 60
2
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2
answers
111
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2
answers
<5 genes as markers for scRNA Cluster?
scrna rna-seq seurat written 5 weeks ago by Dirk • 80 • updated 5 weeks ago by jared.andrews07 ♦ 8.3k
0
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0
answers
111
views
0
answers
Can't find ATAC clusters in Seurat object
single-cell atac seurat written 5 weeks ago by i.am.filippov • 0
0
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1
answer
203
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1
answer
Integrating two Seurat Objects
rna-seq seurat written 6 weeks ago by roberts • 30 • updated 6 weeks ago by igor ♦ 12k
0
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1
answer
145
views
1
answer
Not able to find barcode file for Spatial Transcriptomic data
spatial transcriptomics rna-seq seurat written 6 weeks ago by Mahesh Rao • 0 • updated 6 weeks ago by markus.riester • 510
2
votes
1
answer
255
views
1
answer
Differential expression analysis in Seurat
scrna-seq rna-seq seurat written 6 weeks ago by Lucy • 60 • updated 6 weeks ago by rpolicastro ♦ 3.2k
2
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0
answers
292
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0
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What is the difference between a heatmap-dendrogram of a gene-gene correlation matrix made from one cluster versus multiple clusters?
scrna-seq R seurat rna-seq written 6 weeks ago by Pratik Mehta • 80
3
votes
1
answer
268
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1
answer
How do I subset a Seurat object using variable features?
scrna-seq R seurat rna-seq written 6 weeks ago by Pratik Mehta • 80 • updated 6 weeks ago by bioinformatics2020 • 570
0
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2
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139
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2
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Estimation of Copy Number of alterations(CNA) in Sc-RNA Seq data
single-cell R alteration rna-seq seurat written 7 weeks ago by Maria17 • 0 • updated 7 weeks ago by igor ♦ 12k
0
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0
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196
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0
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DimPlot: labels clusters with sample name
R rna-seq seurat sequencing written 7 weeks ago by Palgrave • 20 • updated 7 weeks ago by _r_am ♦ 32k
0
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0
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1.8k
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0
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How to use "SingleR" on the marker genes from `FindAllMarkers` for each cluster?
singler scrna seurat scrnaseq written 8 weeks ago by SupBioInformatics • 10
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