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<prev • 19 results • page 1 of 1 • next >
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 13 months ago by c_barbarosie • 0 • updated 1 day ago by chariko • 30
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141
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Benchmarking datasets for Haplotype phasing
genome shapeit haplotype na12891 phasing written 8 weeks ago by kirannbishwa01 • 860
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156
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extractPIRs is throwing an ERROR
shapeit extractpirs phasing written 6 months ago by nkausthu • 20 • updated 6 months ago by genomax ♦ 57k
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1
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699
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1
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Strand Alignment in ShapeIt -- "Reference and Main panels are not well aligned"
shapeit gwas alignment written 9 months ago by whit18 • 10 • updated 8 months ago by Gennady Khvorykh • 90
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error when using shapeit2 phasing with vcf from GATK
vcf shapeit phasing written 14 months ago by Loveinheaven • 0 • updated 14 months ago by h.mon ♦ 20k
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6 follow
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imputation only choose one population as reference panel
shapeit impute2 population gwas written 19 months ago by Peter Chung • 70 • updated 17 months ago by ShirleyDai • 40
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659
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Confused about Effective Population size
shapeit effective population size phasing ne written 19 months ago by andreagarcia871 • 60
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655
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Imputation and phasing of one sample at a time or all samples together ?
shapeit impute2 imputation written 20 months ago by ElCascador • 20
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1.6k
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Haplotype Analysis of Phased Genotype Data
shapeit plink haploview written 21 months ago by alakatos • 0
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How do I use haploid variant data to run finestructure or shapeit
shapeit bacteria haploid finestructure written 22 months ago by Juliofdiaz • 130
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634
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result of imputation is vice versa
shapeit imputation minimac3 genotype plink written 2.0 years ago by fatima • 10
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849
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Segmentation fault error while running extractPIRs from ShapeIT
shapeit vcf bam error segmentation fault written 2.1 years ago by kirannbishwa01 • 860
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Can Read Back Phased genotypes be used to extend the haplotype blocks with Beagle, Shapeit, FastPhase etc?
shapeit beagle haplotype fastphase readbackphasing written 2.1 years ago by kirannbishwa01 • 860
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857
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genotype imputation - alleles
shapeit impute2 imputation written 2.1 years ago by alessandrotestori7 • 300
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663
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Is it possible to get LD statistics keeping haplotype in mind?
shapeit haplotype plink ld r2 written 2.2 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
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1.2k
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1
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Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 2.4 years ago by kirannbishwa01 • 860 • updated 2.4 years ago by Zev.Kronenberg ♦ 11k
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1.2k
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SHAPEIT allele encoding
shapeit plink phasing written 3.0 years ago by andreagarcia871 • 60
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2.2k
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SHAPEIT output file confusion
shapeit haplotypes snp written 3.6 years ago by j.a.yearsley • 10
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1.9k
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How to bypass SNPs with identical A1 and A2 alleles in PLINK?
shapeit impute2 merge imputation plink written 3.8 years ago by yorgos.athanasiadis • 40
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