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<prev • 22 results • page 1 of 1 • next >
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SHAPEIT - getting 'Segmentation fault'
shapeit haplotyping haplotype phasing written 29 days ago by Larson • 0
3
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1
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288
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1
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Filtering VCFs and Phasing
shapeit vcf filtering vcftools snp written 5 months ago by miles.thorburn • 80
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432
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Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the data externally using SHAPEIT software with family information
genome gwas shapeit phasing hrc written 7 months ago by moldach • 130
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871
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 21 months ago by c_barbarosie • 0 • updated 8 months ago by chariko • 30
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345
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Benchmarking datasets for Haplotype phasing
genome shapeit haplotype na12891 phasing written 10 months ago by kirannbishwa01 • 1000
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331
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extractPIRs is throwing an ERROR
shapeit extractpirs phasing written 14 months ago by nkausthu • 20 • updated 14 months ago by genomax ♦ 68k
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1
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Strand Alignment in ShapeIt -- "Reference and Main panels are not well aligned"
shapeit gwas alignment written 17 months ago by whit18 • 20 • updated 16 months ago by Gennady Khvorykh • 90
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893
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error when using shapeit2 phasing with vcf from GATK
vcf shapeit phasing written 23 months ago by Loveinheaven • 0 • updated 23 months ago by h.mon ♦ 26k
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6 follow
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imputation only choose one population as reference panel
shapeit impute2 population gwas written 2.3 years ago by Peter Chung • 80 • updated 2.1 years ago by ShirleyDai • 40
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Confused about Effective Population size
shapeit effective population size phasing ne written 2.3 years ago by andreagarcia871 • 60
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842
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Imputation and phasing of one sample at a time or all samples together ?
shapeit impute2 imputation written 2.4 years ago by ElCascador • 20
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2.2k
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Haplotype Analysis of Phased Genotype Data
shapeit plink haploview written 2.4 years ago by alakatos • 0
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886
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How do I use haploid variant data to run finestructure or shapeit
shapeit bacteria haploid finestructure written 2.5 years ago by Juliofdiaz • 130
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result of imputation is vice versa
shapeit imputation minimac3 genotype plink written 2.7 years ago by fatima • 10
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1.1k
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Segmentation fault error while running extractPIRs from ShapeIT
shapeit vcf bam error segmentation fault written 2.8 years ago by kirannbishwa01 • 1000
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Can Read Back Phased genotypes be used to extend the haplotype blocks with Beagle, Shapeit, FastPhase etc?
shapeit beagle haplotype fastphase readbackphasing written 2.8 years ago by kirannbishwa01 • 1000
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1.1k
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genotype imputation - alleles
shapeit impute2 imputation written 2.8 years ago by alessandrotestori7 • 330
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825
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Is it possible to get LD statistics keeping haplotype in mind?
shapeit haplotype plink ld r2 written 2.9 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k
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Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 3.1 years ago by kirannbishwa01 • 1000 • updated 3.1 years ago by Zev.Kronenberg ♦ 11k
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1.4k
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SHAPEIT allele encoding
shapeit plink phasing written 3.6 years ago by andreagarcia871 • 60
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2.6k
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SHAPEIT output file confusion
shapeit haplotypes snp written 4.3 years ago by j.a.yearsley • 10
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How to bypass SNPs with identical A1 and A2 alleles in PLINK?
shapeit impute2 merge imputation plink written 4.4 years ago by yorgos.athanasiadis • 40
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