Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: shapeit • reset
or   Classic search
<prev • 26 results • page 1 of 1 • next >
0
votes
0
answers
51
views
0
answers
Problems installing shapeit
shapeit phasing written 3 days ago by michael.flower.14 • 0
0
votes
0
answers
44
views
0
answers
How to decide method for imputing the missing genotype in a VCF
shapeit impute2 imputation beagle written 11 days ago by nchuang • 200
3
votes
1
answer
1.6k
views
5 follow
1
answer
Strand Alignment in ShapeIt -- "Reference and Main panels are not well aligned"
shapeit gwas alignment written 22 months ago by whit18 • 20 • updated 18 days ago by Kevin Blighe ♦ 51k
0
votes
0
answers
167
views
0
answers
Is it acceptable to use ShapeIT for parasite genomes?
shapeit impute2 haplotype phasing beagle written 3 months ago by nataliagru1 • 30 • updated 6 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
176
views
1
answer
Merge phased files from ShapeIT
shapeit phasing written 3 months ago by nataliagru1 • 30 • updated 3 months ago by Charles Warden ♦ 7.3k
0
votes
0
answers
201
views
0
answers
SHAPEIT - getting 'Segmentation fault'
shapeit haplotyping haplotype phasing written 5 months ago by Larson • 0
3
votes
1
answer
412
views
1
answer
Filtering VCFs and Phasing
shapeit vcf filtering vcftools snp written 10 months ago by miles.thorburn • 90
3
votes
0
answers
656
views
0
answers
Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the data externally using SHAPEIT software with family information
genome gwas shapeit phasing hrc written 12 months ago by moldach • 130
0
votes
1
answer
1.0k
views
1
answer
SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 2.2 years ago by c_barbarosie • 0 • updated 13 months ago by chariko • 30
0
votes
0
answers
455
views
0
answers
Benchmarking datasets for Haplotype phasing
genome shapeit haplotype na12891 phasing written 15 months ago by kirannbishwa01 • 1.1k
0
votes
0
answers
417
views
0
answers
extractPIRs is throwing an ERROR
shapeit extractpirs phasing written 19 months ago by nkausthu • 20 • updated 19 months ago by genomax ♦ 74k
0
votes
0
answers
1.1k
views
0
answers
error when using shapeit2 phasing with vcf from GATK
vcf shapeit phasing written 2.3 years ago by Loveinheaven • 0 • updated 2.3 years ago by h.mon ♦ 28k
2
votes
0
answers
1.5k
views
6 follow
0
answers
imputation only choose one population as reference panel
shapeit impute2 population gwas written 2.7 years ago by Peter Chung • 80 • updated 2.5 years ago by ShirleyDai • 40
2
votes
0
answers
1.0k
views
0
answers
Confused about Effective Population size
shapeit effective population size phasing ne written 2.7 years ago by andreagarcia871 • 60
0
votes
0
answers
932
views
0
answers
Imputation and phasing of one sample at a time or all samples together ?
shapeit impute2 imputation written 2.8 years ago by ElCascador • 20
0
votes
0
answers
2.4k
views
0
answers
Haplotype Analysis of Phased Genotype Data
shapeit plink haploview written 2.8 years ago by alakatos • 0
0
votes
0
answers
997
views
0
answers
How do I use haploid variant data to run finestructure or shapeit
shapeit bacteria haploid finestructure written 2.9 years ago by Juliofdiaz • 130
0
votes
0
answers
847
views
0
answers
result of imputation is vice versa
shapeit imputation minimac3 genotype plink written 3.1 years ago by fatima • 10
1
vote
0
answers
1.2k
views
0
answers
Segmentation fault error while running extractPIRs from ShapeIT
shapeit vcf bam error segmentation fault written 3.2 years ago by kirannbishwa01 • 1.1k
1
vote
0
answers
1.4k
views
0
answers
Can Read Back Phased genotypes be used to extend the haplotype blocks with Beagle, Shapeit, FastPhase etc?
shapeit beagle haplotype fastphase readbackphasing written 3.2 years ago by kirannbishwa01 • 1.1k
1
vote
0
answers
1.2k
views
0
answers
genotype imputation - alleles
shapeit impute2 imputation written 3.2 years ago by alessandrotestori7 • 350
0
votes
0
answers
928
views
0
answers
Is it possible to get LD statistics keeping haplotype in mind?
shapeit haplotype plink ld r2 written 3.3 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k
2
votes
1
answer
1.6k
views
1
answer
Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 3.5 years ago by kirannbishwa01 • 1.1k • updated 3.5 years ago by Zev.Kronenberg ♦ 11k
0
votes
0
answers
1.5k
views
0
answers
SHAPEIT allele encoding
shapeit plink phasing written 4.0 years ago by andreagarcia871 • 60
1
vote
0
answers
2.7k
views
0
answers
SHAPEIT output file confusion
shapeit haplotypes snp written 4.7 years ago by j.a.yearsley • 10
0
votes
1
answer
2.3k
views
1
answer
How to bypass SNPs with identical A1 and A2 alleles in PLINK?
shapeit impute2 merge imputation plink written 4.8 years ago by yorgos.athanasiadis • 40
<prev • 26 results • page 1 of 1 • next >
Recent Votes
Recent Locations • All »
  • United States, 1 minute ago
  • United States, 2 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1803 users visited in the last hour