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<prev • 16 results • page 1 of 1 • next >
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 17 days ago by c_barbarosie • 0
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error when using shapeit2 phasing with vcf from GATK
vcf shapeit phasing written 8 weeks ago by Loveinheaven • 0 • updated 8 weeks ago by h.mon ♦ 8.6k
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6 follow
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imputation only choose one population as reference panel
shapeit impute2 population gwas written 6 months ago by Peter Chung • 30 • updated 4 months ago by ShirleyDai • 20
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221
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Confused about Effective Population size
shapeit effective population size phasing ne written 6 months ago by andreagarcia871 • 40
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275
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Imputation and phasing of one sample at a time or all samples together ?
shapeit impute2 imputation written 7 months ago by ElCascador • 20
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Haplotype Analysis of Phased Genotype Data
shapeit plink haploview written 7 months ago by alakatos • 0
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300
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How do I use haploid variant data to run finestructure or shapeit
shapeit bacteria haploid finestructure written 9 months ago by Juliofdiaz • 130
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311
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result of imputation is vice versa
shapeit imputation minimac3 genotype plink written 11 months ago by fatima • 10
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Segmentation fault error while running extractPIRs from ShapeIT
shapeit vcf bam error segmentation fault written 12 months ago by kirannbishwa01 • 530
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Can Read Back Phased genotypes be used to extend the haplotype blocks with Beagle, Shapeit, FastPhase etc?
shapeit beagle haplotype fastphase readbackphasing written 12 months ago by kirannbishwa01 • 530
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380
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genotype imputation - alleles
shapeit impute2 imputation written 12 months ago by alessandrotestori7 • 170
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366
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Is it possible to get LD statistics keeping haplotype in mind?
shapeit haplotype plink ld r2 written 14 months ago by QVINTVS_FABIVS_MAXIMVS • 2.0k
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Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 16 months ago by kirannbishwa01 • 530 • updated 16 months ago by Zev.Kronenberg ♦ 11k
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SHAPEIT allele encoding
shapeit plink phasing written 22 months ago by andreagarcia871 • 40
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SHAPEIT output file confusion
shapeit haplotypes snp written 2.5 years ago by j.a.yearsley • 10
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How to bypass SNPs with identical A1 and A2 alleles in PLINK?
shapeit impute2 merge imputation plink written 2.7 years ago by yorgos.athanasiadis • 20
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