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267

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Shapeit2 - malformed hap file output?

phasing snp shapeit2 written 12 months ago by mstagliamonte • 0

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448

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Phasing Confidence Values using Shapeit2

haplotype estimation wgs phasing shapeit2 written 16 months ago by Mike Vermeulen • 0

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1.4k

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5 follow

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Convert numeric alleles into letters

gwas rehh shapeit2 written 2.7 years ago by Gennady Khvorykh • 90

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1.5k

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shapeit2 pre-phasing error- empty hap file

pre-phasing gwas shapeit2 written 3.3 years ago by Mamta • 440 • updated 3.1 years ago by Biostar ♦♦ 20

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Recent Replies

C: Comparing two columns of one file with two columns of another file, print all th by massa.kassa.sc3na • 60
Hi, do you mean that the 6th and 3rd column to act like key (e.g. "HP:0000028 - oculocerebrorenal...
C: Go Tree Trimming by wilfried.souleyreau • 0
Hi, I would like to remove redundancy between enriched terms, but GO Trimming it's no longer wor...
C: CNV panel making by poiuyt • 0
Sorry, I'll try to be more clear. When I say they don't match I mean the coverage the NGS panel h...
C: what does negative value mean in gene expression profile? by Kevin Blighe ♦ 50k
Frédéric's response, although short and imprecise, explains why there are negative values in the ...
C: str handling in python by Joe ♦ 14k
Your first problem is not that you don't know the python to do this, it's that your starting stri...
C: str handling in python by firatuyulur • 290
I don't mind helping although I agree with whats been said. Yet, maybe its me but, I couldn't und...
A: Coordinates for Transcription Start Site (TSS) by mollitz • 40
Also there is a published reference annotation data set (refTSS) here: https://www.sciencedirec...
A: bedtools genomecov per-base report in igv by ATpoint ♦ 24k
Use option `-bg` to generate a bedGraph and then transform to bigwig using `bedGraphToBigWig` whi...
A: Count matrix from bigwig files - Application by pyKey • 50
Update. Hope this helps. After looking more closely into multiBigwigSummary: read counts in each ...
C: DEXSeq Installation Error by deepak18 • 0
Yes installing libssl-dev worked. Thanks.
C: R loop and other languages by Jean-Karim Heriche ♦ 21k
Start by ensuring that the outer loop sends jobs to different nodes of your cluster. Rewriting wi...
C: How to calculate the density of alternative alleles as a ratio in a window of 10 by Carambakaracho • 1.8k
Th image you reference does not feature alternative alleles, to me it looks like it's displaying ...

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