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14
votes
2
answers
12k
views
5 follow
2
answers
shell script for bowtie/bwa alignment pair end reads
illumina fastq shell bwa bowtie written 5.4 years ago by Paul1.4k • updated 3.1 years ago by emad.albarouki0
11
votes
3
answers
6.4k
views
3
answers
Extract data using awk/sed and output to different files
sed shell awk written 4.1 years ago by Tao370 • updated 4.1 years ago by Alex Reynolds30k
10
votes
2
answers
5.8k
views
2
answers
Split loop into chunks and execute in parallel in shell scripting
loop shell written 5.6 years ago by Bioinfguy30 • updated 5.6 years ago by Pierre Lindenbaum128k
8
votes
3
answers
5.6k
views
3
answers
How to remove a list of reads from fastq file?
fastq script shell bash written 3.9 years ago by Tao370 • updated 3.9 years ago by gangireddy160
2
votes
0
answers
5.1k
views
0
answers
6
votes
2
answers
4.5k
views
2
answers
Filtering nth length from mapped SAM/BAM file.
mirnaseq shell rna-seq bash written 4.8 years ago by unique37980 • updated 4.8 years ago by Pierre Lindenbaum128k
14
votes
4
answers
4.5k
views
10 follow
4
answers
3
votes
0
answers
4.1k
views
0
answers
20
votes
2
answers
3.0k
views
5 follow
2
answers
Parallel for shell script with different output
parallel shell written 5.6 years ago by Korsocius150 • updated 5.6 years ago by geek_y11k
1
vote
1
answer
2.7k
views
1
answer
Matching gene id and extracting fasta sequences using shell script
fasta shell written 4.9 years ago by Rashedul Islam370 • updated 4.9 years ago by Matt Shirley9.3k
2
votes
2
answers
2.5k
views
2
answers
8
votes
4
answers
2.2k
views
6 follow
4
answers
How to extract specific rows based on row number from a file
extract shell file-handling written 2.0 years ago by vinayjrao170 • updated 2.0 years ago by shenwei3565.2k
7
votes
0
answers
2.1k
views
0
answers
4
votes
2
answers
2.1k
views
2
answers
3
votes
1
answer
2.1k
views
1
answer
Convert gff3 to gtf with R or shell
gff3 R ngs shell gtf written 21 months ago by bioinfo8120
10
votes
2
answers
2.1k
views
2
answers
Generating shell scripts
shell bash written 4.6 years ago by ebrown1955300 • updated 4.6 years ago by Pierre Lindenbaum128k
0
votes
1
answer
2.0k
views
1
answer
how to run a command for batch file
coomand unix shell linux written 4.4 years ago by sanjeet000019920 • updated 4.4 years ago by dschika300
4
votes
2
answers
2.0k
views
2
answers
How to count files/folders on NCBI ftp server?
ncbi ftp shell linux written 4.0 years ago by Tao370 • updated 4.0 years ago by SES8.3k
0
votes
0
answers
2.0k
views
0
answers
0
votes
1
answer
1.9k
views
1
answer
0
votes
1
answer
1.7k
views
1
answer
Creating Unique Fasta Headers
fasta bioinformatics shell python written 4.2 years ago by peerlesshm0 • updated 4.2 years ago by igor10k
7
votes
2
answers
1.7k
views
2
answers
Problem running IGB on linux
integrated genome browser java igb shell myposts written 4.3 years ago by kirannbishwa011.2k • updated 4.3 years ago by dcnorris270
20
votes
0
answers
1.6k
views
15 follow
0
answers
Forum: Awk in Bioinformatics
perl forum shell awk written 21 months ago by Shicheng Guo8.2k
5
votes
1
answer
1.6k
views
1
answer
5
votes
3
answers
1.6k
views
3
answers
extracting a specific field from .bed file and sort into new file
bed bash script shell python written 2.6 years ago by g.sathish.k0 • updated 2.6 years ago by Pierre Lindenbaum128k
9
votes
1
answer
1.5k
views
1
answer
0
votes
1
answer
1.5k
views
1
answer
replace vcf file ID column
vcf phython replace column shell linux written 3.2 years ago by tanya.copley10 • updated 3.2 years ago by Pierre Lindenbaum128k
2
votes
1
answer
1.5k
views
5 follow
1
answer
10
votes
1
answer
1.4k
views
1
answer
Simple amino acid polymorphism count
alignment unix shell written 3.2 years ago by stutterdust0 • updated 3.1 years ago by st.ph.n2.5k
0
votes
1
answer
1.3k
views
1
answer
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