Showing: shellreset
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14
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2
answers
10k
views
5 follow
2
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shell script for bowtie/bwa alignment pair end reads
illumina fastq shell bwa bowtie written 4.5 years ago by Paul1.3k • updated 2.2 years ago by emad.albarouki0
11
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3
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5.2k
views
3
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Extract data using awk/sed and output to different files
sed shell awk written 3.2 years ago by Tao300 • updated 3.2 years ago by Alex Reynolds28k
5
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3
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4.4k
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3
answers
How to remove a list of reads from fastq file?
fastq script shell bash written 3.0 years ago by Tao300 • updated 3.0 years ago by gangireddy160
10
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2
answers
4.4k
views
2
answers
Split loop into chunks and execute in parallel in shell scripting
loop shell written 4.7 years ago by Bioinfguy30 • updated 4.7 years ago by Pierre Lindenbaum121k
5
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2
answers
3.8k
views
2
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Filtering nth length from mapped SAM/BAM file.
mirnaseq shell rna-seq bash written 4.0 years ago by unique37970 • updated 4.0 years ago by Pierre Lindenbaum121k
14
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4
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3.2k
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10 follow
4
answers
2
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0
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2.8k
views
0
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20
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2
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2.7k
views
5 follow
2
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Parallel for shell script with different output
parallel shell written 4.7 years ago by Korsocius110 • updated 4.7 years ago by geek_y9.8k
3
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0
answers
2.3k
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0
answers
1
vote
1
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2.3k
views
1
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Matching gene id and extracting fasta sequences using shell script
fasta shell written 4.0 years ago by Rashedul Islam310 • updated 4.0 years ago by Matt Shirley9.0k
2
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2
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1.9k
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2
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4
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2
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1.8k
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2
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10
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2
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1.8k
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2
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Generating shell scripts
shell bash written 3.7 years ago by ebrown1955300 • updated 3.7 years ago by Pierre Lindenbaum121k
0
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1
answer
1.7k
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1
answer
0
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1
answer
1.7k
views
1
answer
how to run a command for batch file
coomand unix shell linux written 3.5 years ago by sanjeet000019920 • updated 3.5 years ago by dschika290
7
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0
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1.6k
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0
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0
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0
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1.5k
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0
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4
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2
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1.5k
views
2
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How to count files/folders on NCBI ftp server?
ncbi ftp shell linux written 3.2 years ago by Tao300 • updated 3.2 years ago by SES8.2k
5
votes
1
answer
1.5k
views
1
answer
0
votes
1
answer
1.4k
views
1
answer
Creating Unique Fasta Headers
fasta bioinformatics shell python written 3.3 years ago by peerlesshm0 • updated 3.3 years ago by igor7.9k
7
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2
answers
1.4k
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2
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Problem running IGB on linux
integrated genome browser java igb shell myposts written 3.4 years ago by kirannbishwa011.0k • updated 3.4 years ago by dcnorris270
0
votes
1
answer
1.1k
views
1
answer
replace vcf file ID column
vcf phython replace column shell linux written 2.4 years ago by tanya.copley10 • updated 2.4 years ago by Pierre Lindenbaum121k
0
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1
answer
1.1k
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1
answer
5
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3
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1.1k
views
3
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extracting a specific field from .bed file and sort into new file
bed bash script shell python written 21 months ago by g.sathish.k0 • updated 20 months ago by Pierre Lindenbaum121k
3
votes
1
answer
1.1k
views
1
answer
Convert gff3 to gtf with R or shell
gff3 R ngs shell gtf written 11 months ago by bioinfo8120
10
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1
answer
1.1k
views
1
answer
Simple amino acid polymorphism count
alignment unix shell written 2.3 years ago by stutterdust0 • updated 2.3 years ago by st.ph.n2.5k
2
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1
answer
1.1k
views
5 follow
1
answer
2
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3
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1.1k
views
3
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12
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4
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1.0k
views
6 follow
4
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20
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0
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1.0k
views
15 follow
0
answers
Forum: Awk in Bioinformatics
perl forum shell awk written 10 months ago by Shicheng Guo7.6k
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