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psf file not generated in VMD ?
simulation namd .psf vmd written 1 day ago by shreerambehera4 • 0
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49
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sim1000G for simulating case/control data
rare variant simulation association sim1000g written 9 days ago by Gene • 20
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1
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3.6k
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1
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Md Simulation Of Protein-Ligand Complex
simulation written 7.8 years ago by dimkal • 730 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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1
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i have to calculate enthalpy entropy and free energy for gromacs trajectories using python can any one suggest me which equation i should apply for that??
python simulation gromacs molecular dynamics written 3.5 years ago by bioquery • 0 • updated 12 weeks ago by debanjansen48 • 0
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177
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How to use BBmap (mutate.sh) to simulate the human genome?
human genome simulation bbmap written 6 months ago by kamanovae • 0 • updated 5 months ago by Biostar ♦♦ 20
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125
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Public simulated SNP dataset
assembly simulation next-gen chip-seq snp written 6 months ago by Siavash Salek Ardestani • 20
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1
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158
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1
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How to analyse a given molecule's binding affinity to DNA
simulation dna structure docking written 7 months ago by Min Dai • 160 • updated 7 months ago by matteoferla • 30
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4
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Reads Simulation and Read Simulator
reads simulator simulation ngs written 4.5 years ago by midox • 260 • updated 8 months ago by onestop_data • 260
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1
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170
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1
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available genotyping data
dataset simulation genotype plink gwas written 8 months ago by javadjamshidi • 40 • updated 8 months ago by Kevin Blighe ♦ 66k
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155
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Simulating RNA Editing
rna editing simulation rna-seq sequencing written 8 months ago by sagicoh1003 • 0
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176
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How to get genes with best Phylogenetic signal from multiple orthologous genes?
phylogeny simulation orthologous written 9 months ago by kabir.deb0353 • 10
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What Is An Appropriate Software For Simulating Haplotype Structure In A Pedigree?
simulation haplotype selection snp written 9.0 years ago by Rubal • 80 • updated 11 months ago by Biostar ♦♦ 20
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Sequences in Darwin file format (ALF simulator)
simulation alf written 13 months ago by ivminkin • 0 • updated 12 months ago by Biostar ♦♦ 20
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580
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Scripting AMBER Preparation files
amber simulation molecular dynamics scripts written 15 months ago by protein_fashion • 0
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331
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Simulating Time Course RNA-Seq Data With Polyester
simulation polyester time course noise rna-seq written 16 months ago by ecaa2017 • 0
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234
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Predict the ligand binding site in an Outer Membrane Protein (OMP)?
simulation docking phage tail proteins omp written 16 months ago by DanielC • 130
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2
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524
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2
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Best way to create syntetic metagenomic reads
simulation metagenomic sequencing written 17 months ago by yoann.dufresne0 • 0 • updated 17 months ago by genomax ♦ 91k
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350
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How to Simulate RNA-Seq data with allelic bias
simulation next-gen rna-seq written 18 months ago by Giovanni Quinones Valdez • 0
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346
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Simulation of Tajima's D using msms
simulation msms tajima's d written 18 months ago by aloke205 • 40
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2
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860
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2
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Insert mutations in a reference genome from a vcf
simulation snp sequencing written 20 months ago by IP • 700 • updated 20 months ago by WouterDeCoster ♦ 44k
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406
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Why we simulate genetic data?
simulation population genetics written 22 months ago by rprog008 • 70
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1.2k
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Low coverage genome simulation
genome simulation written 5.6 years ago by MMK • 20 • updated 22 months ago by Gabriel R. • 2.8k
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476
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Which are the best book for learning population genetics simulation studies ?
simulation population genetics written 22 months ago by rprog008 • 70
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1
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 2.8 years ago by J.F.Jiang • 830 • updated 23 months ago by zx8754 ♦ 9.7k
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451
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Simulation of a 1.25-fold change using Poisson Data
simulation rna-seq written 2.0 years ago by nkhan.mscs15seecs • 70
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483
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Looking for tools to simulate expression data (RNAseq, proteomic, arrays)
proteomics simulation microarrays rna-seq written 2.1 years ago by Israel Barrantes • 790
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6 follow
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RNA-seq illumina paired-end data simulation with fold change differences
simulation sequence rna-seq written 2.4 years ago by k.kathirvel93 • 260 • updated 2.2 years ago by grant.hovhannisyan • 2.0k
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3
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1.6k
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3
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Generating random DNA sequence and paired-end alignment
R simulation python written 4.2 years ago by ThePresident • 150 • updated 2.3 years ago by Johan Zicola • 60
2
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1
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599
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1
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Make artificial read count table
simulation artificial rna-seq written 2.3 years ago by hougiotaejut • 10 • updated 2.3 years ago by h.mon ♦ 31k
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ViennaRNA; partition function and probability in ensemble for suboptimal structures?
viennarna simulation rna written 5.6 years ago by Ali R. Vahdati • 190 • updated 2.3 years ago by Biostar ♦♦ 20
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