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A list of human cell cycle genes for Seurat
rna-seq cell cycle single cell written 15 hours ago by Pestudkaru • 20 • updated 12 hours ago by Shicheng Guo • 7.4k
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Seurat: Percentage distribution of cells in all clusters based on their treatment condition?
R rna-seq seurat single cell written 9 days ago by charlesgwellem • 0 • updated 9 days ago by Santosh Anand ♦ 4.6k
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Normalizing using Seurat with large numbers of samples
scrna-seq R single cell written 28 days ago by Kristin Muench • 350
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In Seurat, what data is VlnPlot() plotting?
scrna-seq seurat rna-seq single cell written 28 days ago by Kristin Muench • 350
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Job: Postdoc position in computational analysis for single cell molecular data at Institut Curie (Paris)
job single cell computational biology written 28 days ago by jane.merlevede • 10
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single cell analysis: normalize gene expression across samples
10x cell ranger single cell written 29 days ago by neta.zuckerman • 0
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How can i control the cluster number in scRNASeq clustering by Seurat package
rna-seq single cell seurat written 7 weeks ago by wenchuan.xie • 0 • updated 7 weeks ago by igor ♦ 7.3k
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Is there any way to infer percentage from the branches in trajectories plotted in Monocle?
single-cell R monocle single cell trajectory written 5 months ago by Batu • 110 • updated 8 weeks ago by leon.zhan • 0
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Downloading single cell data from NCBI
ncbi fastq-dump rna seq single cell written 8 weeks ago by V • 100
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Deconvolution Method in Seurat and convert from SingleCellExperiment
R chip-seq seurat single cell rna-seq written 9 weeks ago by hamza_karakurt • 0
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Job: Staff scientist in bioinformatics. KAUST Bioscience Core Lab.
long read ngs method development job single cell written 10 weeks ago by YF • 10
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Align two single cell experiments
R job single cell written 11 weeks ago by elb • 160 • updated 11 weeks ago by Michael Dondrup ♦ 45k
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21 follow
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Tool: BioTuring Browser: Making single-cell sequencing data in published studies really accessible!
sc-rna rna single cell rna-seq tool written 4 months ago by sonpham • 550
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Single Cell RNAseq Imputation in Seurat
imputation rna-seq single cell written 4 months ago by bioinformatics.cancer • 180 • updated 3 months ago by kristoffer.vittingseerup • 1.4k
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Seurat Cell Cycle Phase Assignments
rna-seq cell cycle single cell seurat written 3 months ago by ianmw • 30 • updated 3 months ago by kristoffer.vittingseerup • 1.4k
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HUGO and Ensembl ids
ensembl hugo rna-seq single cell written 4 months ago by rsafavi • 40 • updated 3 months ago by EagleEye ♦ 6.2k
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29 follow
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Tutorial: Resources for flow cytometry bioinformatics
flow cytometry tutorial single cell written 4.8 years ago by Ahill • 1.4k
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Single Cell Sequencing Quality
bedtools samtools single cell written 4 months ago by hshah • 20 • updated 4 months ago by RamRS ♦ 20k
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Peak call? or Just convert to bedfile by bedtools bamtobed? to generate the accessibility matrix of single-end single cell ATAC-seq
atac-seq single cell written 7 months ago by soya • 0 • updated 6 months ago by Devon Ryan ♦ 88k
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10X based Single cell sequencing for comparing two different disease states
single cell rna-seq written 7 months ago by halo22 • 120 • updated 7 months ago by igor ♦ 7.3k
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plotting the expression profiles of different conditions in same plot
R single cell clustering heatmap written 8 months ago by Za • 120 • updated 7 months ago by Biostar ♦♦ 20
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QC before single cell RNA seq?
qc rna-seq single cell written 7 months ago by jevanveen • 20
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Single cell RNA sequencing Seurat and Monocle
seurat cell trajectory rna-seq single cell monocle written 10 months ago by bioinformatics.cancer • 180 • updated 8 months ago by dppb05 • 70
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how to judge the 10X genomics single cell data quality
single cell written 8 months ago by biologo • 10
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errors in newCellDataSet Monocle function
single cell rna-seq written 9 months ago by jonessara770 • 130 • updated 8 months ago by Batu • 110
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Differential Expression Analysis with monocle and batch effect correction
rna-seq single cell batch effect written 9 months ago by Poorya Parvizi • 40 • updated 8 months ago by Kevin Blighe ♦ 37k
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Job: Post-doc positions on non-coding RNAs in neurological diseases at RIKEN Yokohama Japan
crispr gwas job single cell lncrna written 9 months ago by chungchau.hon • 10
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Storing a gene expression matrix in a matrix.mtx
software error single cell written 9 months ago by Za • 120 • updated 9 months ago by jbalberge • 80
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How to unique bwa mem reads?
unique reads bwa single cell atac-seq written 9 months ago by niu.shengyong • 30
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Extract, combine substring and concatenate in the beginning of the same row
atac barcode string single cell written 9 months ago by niu.shengyong • 30 • updated 9 months ago by Alex Reynolds ♦ 27k
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