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Peak call? or Just convert to bedfile by bedtools bamtobed? to generate the accessibility matrix of single-end single cell ATAC-seq
atac-seq single cell written 5 weeks ago by soya • 0 • updated 20 days ago by Devon Ryan ♦ 82k
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10X based Single cell sequencing for comparing two different disease states
single cell rna-seq written 5 weeks ago by halo22 • 110 • updated 5 weeks ago by igor ♦ 6.5k
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plotting the expression profiles of different conditions in same plot
R single cell clustering heatmap written 11 weeks ago by Za • 50 • updated 5 weeks ago by Biostar ♦♦ 20
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QC before single cell RNA seq?
qc rna-seq single cell written 7 weeks ago by jevanveen • 20
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Single cell RNA sequencing Seurat and Monocle
seurat cell trajectory rna-seq single cell monocle written 4 months ago by bioinformatics.cancer • 170 • updated 9 weeks ago by dppb05 • 60
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how to judge the 10X genomics single cell data quality
single cell written 11 weeks ago by biologo • 10
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27 follow
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Tutorial: Resources for flow cytometry bioinformatics
flow cytometry tutorial single cell written 4.3 years ago by Ahill • 1.1k
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errors in newCellDataSet Monocle function
single cell rna-seq written 3 months ago by jonessara770 • 100 • updated 12 weeks ago by Batu • 40
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Differential Expression Analysis with monocle and batch effect correction
rna-seq single cell batch effect written 12 weeks ago by Poorya Parvizi • 30 • updated 12 weeks ago by Kevin Blighe ♦ 25k
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Job: Post-doc positions on non-coding RNAs in neurological diseases at RIKEN Yokohama Japan
crispr gwas job single cell lncrna written 3 months ago by chungchau.hon • 10
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Storing a gene expression matrix in a matrix.mtx
software error single cell written 3 months ago by Za • 50 • updated 3 months ago by jbalberge • 70
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How to unique bwa mem reads?
unique reads bwa single cell atac-seq written 3 months ago by niu.shengyong • 30
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Extract, combine substring and concatenate in the beginning of the same row
atac barcode string single cell written 3 months ago by niu.shengyong • 30 • updated 3 months ago by Alex Reynolds ♦ 25k
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Comparing Different Single Cell Datasets
de compare rna-seq single cell written 3 months ago by sallehl • 0
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Open source alternatives to SureCell RNA Single-Cell App in Basespace?
illumina sure cell single cell ddseq rna-seq written 4 months ago by greener • 10 • updated 4 months ago by allthebases • 0
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Single Cell RNA-seq Mitochondrial Gene Expression
mitochondrial expression rna-seq single cell written 14 months ago by bioinformatics.cancer • 170 • updated 5 months ago by Friederike • 2.0k
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single-cell RNA-seq power analysis
power analysis rna-seq single cell written 13 months ago by niu.shengyong • 30 • updated 5 months ago by Biostar ♦♦ 20
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Clustering Cells using known marker genes (Single cell RNAseq)
rnaseq single cell written 13 months ago by V • 70 • updated 6 months ago by PR • 0
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Job: MS/PhD Position: Computational Systems Biology, The University of Memphis
systems biology stochastic modeling job single cell written 7 months ago by bjdaigle • 10
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What is the actual cause of excessive zeroes in single cell RNA-seq data? Is it PCR?
modelling rna-seq single cell pcr written 10 months ago by cerny.m • 20
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Job: Cancer Computational Genomics/Bioinformaticist Position - Stanford
wgs next-gen rna-seq single cell job written 10 months ago by christina.curtis • 10
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Tool: UMI-Tools 0.5, now with tools for cell barcoded scRNA-seq
umi rna-seq single cell tool written 12 months ago by i.sudbery • 2.4k
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Make Dendrogram Wider
rnaseq dendrogram single cell written 13 months ago by V • 70
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TCR RNAseq Single Cell Data Analysis
immunoseq paired tcr single cell rna-seq written 21 months ago by bioinformatics.cancer • 170 • updated 13 months ago by carina.dehner • 0
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Public data access: Single-cell RNA-seq and Buck RNA-seq data
public compare single cell buck rna-seq written 2.8 years ago by Shicheng Guo • 6.1k • updated 16 months ago by biomiha • 10
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Job: Computational Postdoc positions available Harvard Medical School/Massachusetts General Hospital
crispr epigenomics machine learning single cell job written 16 months ago by lucapinello • 0
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icell8 vs 10x single cell plateforms
single cell genomics rna-seq written 22 months ago by asharmatelome • 50
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single cell RNAseq normalization across cell samples
next-gen rna-seq single cell written 23 months ago by 309772486 • 10
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News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
news single cell rna-seq written 2.1 years ago by Sean Davis ♦ 24k
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RNA-Seq from limited cells
rna-seq single cell written 2.2 years ago by rob.costa1234 • 150
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