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<prev • 140 results • page 1 of 5 • next >
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Creating HTO Count Matrix for Demultiplexing
single cell cell hashing cite seq written 15 days ago by fouerghi20 • 30 • updated 2 days ago by gildas.lepennetier • 10
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Which normalization method/pipeline is best to generate normalized counts to make different single cell experiments comparable
normalization single cell written 7 days ago by amjass • 20 • updated 7 days ago by Mensur Dlakic • 9.1k
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A list of plant (Arabidopsis, rice or maize) cell cycle genes for Seurat
scrna-seq seurat cell cycle single cell written 7 days ago by slbai00001 • 0
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Cell type assignment for non-model organism single cell RNA-seq
scrna-seq non-model organism rna-seq single cell written 17 days ago by predeus • 1.5k
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Compare fold change and p values for the same gene between different DESeq runs
volcano R deseq single cell rna-seq written 19 days ago by kw486 • 10
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191
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Algorithm to remove batch effects
rna-seq batch effect correction single cell written 7 weeks ago by fouerghi20 • 30 • updated 28 days ago by predeus • 1.5k
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scRNAseq - infer type of single-cell chemistry from fastq
scrna-seq single cell rna-seq written 29 days ago by predeus • 1.5k
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Normalization before or after merging the samples in Seurat
single cell batch effect correction seurat written 7 weeks ago by fouerghi20 • 30 • updated 7 weeks ago by jared.andrews07 ♦ 8.6k
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Is it worth it to explore outside of Seurat?
single cell seurat written 7 weeks ago by fouerghi20 • 30 • updated 7 weeks ago by ATpoint ♦ 46k
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Duplicated row names on Seurat
ccle seurat scrnaseq single cell written 11 weeks ago by fouerghi20 • 30 • updated 8 weeks ago by Biostar ♦♦ 20
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237
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Labeling Clusters in ggplot
ggplot single cell written 10 weeks ago by fouerghi20 • 30
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FeaturePlot on a KDE Plot/density plot
R single cell seurat rna-seq written 8 weeks ago by fouerghi20 • 30
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41 follow
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Tutorial: Resources for flow cytometry bioinformatics
flow cytometry tutorial single cell written 6.9 years ago by Ahill • 1.9k • updated 10 weeks ago by directmailmart28 • 0
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Mean Variance Relationship single cell RNA-Seq Data
variance deseq2 rna-seq single cell written 10 weeks ago by kw486 • 10 • updated 10 weeks ago by Friederike ♦ 6.8k
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Problem in single cell RNA velocity analysis using kb_python
kb_python kallisto bustools velocity single cell written 12 weeks ago by Mohamed Omar • 10
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differential gene expression after cell cycle regression
R regression single cell cell cycle rna-seq written 12 weeks ago by kw486 • 10
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vlm.adjust_totS_totU -- Input contains NaN, infinity or a value too large for dtype('float64')
velocyto loom kallisto single cell velocity written 4 months ago by ericrkofman • 10
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Kallisto single cell velocity tutorial question
loom kallisto single cell velocity written 4 months ago by ericrkofman • 10 • updated 4 months ago by dsull • 1.8k
3
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1
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281
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1
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Convert 10x single cell RNA-seq bam file to bulk RNA-seq bam file
cell ranger samtools single cell rna-seq written 4 months ago by krc3004 • 20 • updated 4 months ago by rpolicastro ♦ 4.0k
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262
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Seurat Integration Post-Normalization and Cluster Identification or Pre those Steps
single cell seurat integration written 4 months ago by fouerghi20 • 30
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Quantification of cell cluster in Single cell data
wilcoxon rna-seq single cell seurat written 4 months ago by David_emir • 390
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Models of gene coexpression probability in single cell transcriptional space
gene bayesian statistics rna-seq single cell written 5 months ago by sissypants :) • 10
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241
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Differentials Expressed Genes from each state in Monocle 2
dge monocle2 state single cell written 5 months ago by David_emir • 390
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Single-cell Datasets Integration
single cell data integration seurat written 5 months ago by manishaB • 0 • updated 5 months ago by jared.andrews07 ♦ 8.6k
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PHATE Clustering Error
scrna-seq seurat phate error single cell written 5 months ago by fouerghi20 • 30 • updated 5 months ago by GenoMax ♦ 96k
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Which is the best pipeline for demultiplexing sample hashing in single-cell sequencing?
single cell sample barcoding rna-seq written 5 months ago by dugong • 0
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CMS subtype identification in Single cell data
cmscaller single cell rna-seq written 5 months ago by David_emir • 390 • updated 5 months ago by jared.andrews07 ♦ 8.6k
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How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
scrna-seq droptag rna-seq single cell seq-well written 5 months ago by dhkwnr95 • 0 • updated 5 months ago by Rob ♦ 4.6k
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Annotation of Single Cell Clusters
cluster rna-seq single cell tool written 10 months ago by Shelle • 10 • updated 6 months ago by Ashwini Patil • 20
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recommendation needed: scRNA-seq batch effect correction methods that can be used for differential expression
rna-seq single cell batch effect written 6 months ago by changxu.fan • 50 • updated 6 months ago by ATpoint ♦ 46k
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