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Which is the best pipeline for demultiplexing sample hashing in single-cell sequencing?
single cell sample barcoding rna-seq written 2 days ago by dugong • 0
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CMS subtype identification in Single cell data
cmscaller single cell rna-seq written 6 days ago by David_emir • 370 • updated 5 days ago by jared.andrews07 ♦ 6.9k
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How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
scrna-seq droptag rna-seq single cell seq-well written 10 days ago by dhkwnr95 • 0 • updated 10 days ago by Rob ♦ 4.1k
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Annotation of Single Cell Clusters
cluster rna-seq single cell tool written 5 months ago by Shelle • 0 • updated 18 days ago by Ashwini Patil • 10
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recommendation needed: scRNA-seq batch effect correction methods that can be used for differential expression
rna-seq single cell batch effect written 27 days ago by changxu.fan • 50 • updated 26 days ago by ATpoint ♦ 38k
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Can we compare bulk RNAseq samples and single cell rnaseq clusters?
bulk rna-seq single cell immune cells written 8 weeks ago by learner.bioinformatics • 0 • updated 27 days ago by Kevin Blighe ♦ 65k
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Job: PhD Position: Computational Systems Biology, The University of Memphis
networks deep learning job single cell rna-seq written 4 weeks ago by bjdaigle • 10
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Statistical test on Single-cell clusters(cell types)
statistical exact permutation test single cell written 5 weeks ago by David_emir • 370
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single cell INDEX & Seq
single cell rna-seq written 7 weeks ago by GiuliaAC • 0
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Tool: Pseudotime Abstract KNetL map (PAK map) for single cell data
pseudotime scrna tool graph single cell written 8 weeks ago by alireza.khodadadi.j • 60
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Cells per sample
rna seq single cell written 9 weeks ago by GiuliaAC • 0
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10x Cell Ranger 'count' function error:
10x cellranger single cell written 11 weeks ago by miyagi • 0
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Using R Studio on Cloud
R rna-seq rstudio single cell written 12 weeks ago by lokraj2003 • 90 • updated 12 weeks ago by zx8754 ♦ 9.6k
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GSVA analysis between Clusters
gsva single cell seurat written 3 months ago by David_emir • 370 • updated 3 months ago by khorms • 130
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scATAC-pro command issue
sc-atac scatac-pro next-gen single cell sequencing written 3 months ago by sidrah.maryam • 10
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Treatment VS Control in Single Cell RNAseq analysis
rnaseq de analysis treatment control single cell written 3 months ago by grayapply2009 • 220 • updated 3 months ago by ATpoint ♦ 38k
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GEO COVID-19 accession with no .mtx, .crb or .rds file?
covid-19 scmrna single cell written 3 months ago by demoraesdiogo2017 • 40
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Compare signatures between scRNA-seq clusters in R
signature rna-seq seurat single cell written 4 months ago by maricarmenromeromulero • 0
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Alternative tool for split'N'trim
rna_seq galaxy single cell snp written 4 months ago by aiswaryabioinfo • 20
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Forum: Which programming langauge shall I start as a beginner in Bioinformatics
language forum programing single cell written 4 months ago by nkg.bb • 0 • updated 4 months ago by Juke34 • 4.6k
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'find_gene_modules' error in the Monocle 3 tutorial
monocle monocle 3 rna-seq single cell written 6 months ago by vHelmholtz • 20 • updated 4 months ago by krovi138 • 0
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Cellranger aggr versus Seurat
10xgenomics seurat single cell written 4 months ago by swbarnes2 ♦ 8.6k • updated 4 months ago by igor ♦ 11k
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Choose root nodes in Monocle3
trajectory single cell rna-seq written 5 months ago by Payal • 90
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Retrieving individual cells from scRNA-seq bigWig files?
scrna-seq bigwig single cell rna-seq written 5 months ago by txema.heredia • 0 • updated 5 months ago by geek_y ♦ 11k
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Seurat FeaturePlot: highlight only cells coexpressing several genes
rna-seq single cell seurat written 13 months ago by yassin • 0 • updated 5 months ago by rrkatreddi • 0
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CellRanger scRNA .mtx only uses 15% of reads in .bam?
.bam .mtx scrna cellranger single cell written 5 months ago by Diedes • 20 • updated 5 months ago by i.sudbery ♦ 9.1k
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Counting Genomes from NCBI and GOLD
genome ncbi gold metagenome single cell written 5 months ago by mss • 30
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Storing a gene expression matrix in a matrix.mtx
software error single cell written 2.4 years ago by Za • 130 • updated 6 months ago by Kevin Blighe ♦ 65k
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Unable to convert single cell RNA Seq bam to fastq using cellranger's bamtofastq
single cell cellranger single cell rna seq written 6 months ago by Researcher • 60
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STARsolo read1 length greater than cell barcode length and UMI length
alignment rna-seq single cell written 6 months ago by from the mountains • 110
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