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vlm.adjust_totS_totU -- Input contains NaN, infinity or a value too large for dtype('float64')
velocyto loom kallisto single cell velocity written 24 days ago by ericrkofman • 10
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100
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Kallisto single cell velocity tutorial question
loom kallisto single cell velocity written 24 days ago by ericrkofman • 10 • updated 24 days ago by dsull • 1.6k
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120
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Convert 10x single cell RNA-seq bam file to bulk RNA-seq bam file
cell ranger samtools single cell rna-seq written 25 days ago by krc3004 • 20 • updated 25 days ago by rpolicastro • 2.3k
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113
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Seurat Integration Post-Normalization and Cluster Identification or Pre those Steps
single cell seurat integration written 27 days ago by fouerghi20 • 20
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110
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Quantification of cell cluster in Single cell data
wilcoxon rna-seq single cell seurat written 6 weeks ago by David_emir • 380
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99
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Models of gene coexpression probability in single cell transcriptional space
gene bayesian statistics rna-seq single cell written 7 weeks ago by sissypants :) • 10
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121
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Differentials Expressed Genes from each state in Monocle 2
dge monocle2 state single cell written 8 weeks ago by David_emir • 380
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Single-cell Datasets Integration
single cell data integration seurat written 8 weeks ago by manishaB • 0 • updated 8 weeks ago by jared.andrews07 ♦ 7.9k
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PHATE Clustering Error
scrna-seq seurat phate error single cell written 9 weeks ago by fouerghi20 • 20 • updated 8 weeks ago by genomax ♦ 92k
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Which is the best pipeline for demultiplexing sample hashing in single-cell sequencing?
single cell sample barcoding rna-seq written 10 weeks ago by dugong • 0
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CMS subtype identification in Single cell data
cmscaller single cell rna-seq written 10 weeks ago by David_emir • 380 • updated 10 weeks ago by jared.andrews07 ♦ 7.9k
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217
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How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
scrna-seq droptag rna-seq single cell seq-well written 11 weeks ago by dhkwnr95 • 0 • updated 11 weeks ago by Rob ♦ 4.5k
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Annotation of Single Cell Clusters
cluster rna-seq single cell tool written 7 months ago by Shelle • 0 • updated 12 weeks ago by Ashwini Patil • 20
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recommendation needed: scRNA-seq batch effect correction methods that can be used for differential expression
rna-seq single cell batch effect written 3 months ago by changxu.fan • 50 • updated 3 months ago by ATpoint ♦ 41k
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Can we compare bulk RNAseq samples and single cell rnaseq clusters?
bulk rna-seq single cell immune cells written 4 months ago by learner.bioinformatics • 0 • updated 3 months ago by Kevin Blighe ♦ 67k
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Job: PhD Position: Computational Systems Biology, The University of Memphis
networks deep learning job single cell rna-seq written 3 months ago by bjdaigle • 10
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Statistical test on Single-cell clusters(cell types)
statistical exact permutation test single cell written 3 months ago by David_emir • 380
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single cell INDEX & Seq
single cell rna-seq written 4 months ago by GiuliaAC • 10
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Tool: Pseudotime Abstract KNetL map (PAK map) for single cell data
pseudotime scrna tool graph single cell written 4 months ago by alireza.khodadadi.j • 60
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Cells per sample
rna seq single cell written 4 months ago by GiuliaAC • 10
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10x Cell Ranger 'count' function error:
10x cellranger single cell written 5 months ago by miyagi • 0
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Using R Studio on Cloud
R rna-seq rstudio single cell written 5 months ago by lokraj2003 • 90 • updated 5 months ago by zx8754 ♦ 9.7k
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GSVA analysis between Clusters
gsva single cell seurat written 5 months ago by David_emir • 380 • updated 5 months ago by khorms • 210
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scATAC-pro command issue
sc-atac scatac-pro next-gen single cell sequencing written 5 months ago by sidrah.maryam • 20
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Treatment VS Control in Single Cell RNAseq analysis
rnaseq de analysis treatment control single cell written 5 months ago by grayapply2009 • 220 • updated 5 months ago by ATpoint ♦ 41k
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GEO COVID-19 accession with no .mtx, .crb or .rds file?
covid-19 scmrna single cell written 5 months ago by demoraesdiogo2017 • 40
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Compare signatures between scRNA-seq clusters in R
signature rna-seq seurat single cell written 6 months ago by maricarmenromeromulero • 0
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Alternative tool for split'N'trim
rna_seq galaxy single cell snp written 6 months ago by aiswaryabioinfo • 20
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Forum: Which programming langauge shall I start as a beginner in Bioinformatics
language forum programing single cell written 7 months ago by nkg.bb • 0 • updated 6 months ago by Juke34 • 4.9k
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'find_gene_modules' error in the Monocle 3 tutorial
monocle monocle 3 rna-seq single cell written 9 months ago by vHelmholtz • 20 • updated 6 months ago by krovi138 • 0
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