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single-cell rna seq • reset2
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Recent Replies
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C: No result in enrichGO by
WF • 0
Dear all, I'm trying to run groupGO, but its return "no count, noGeneRatio and no geneID but ju...
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A: BSgenome.Hsapiens.UCSC.hg38 vs BSgenome.Hsapiens.NCBI.GRCh38 by
igor ♦ 6.8k
There are actually many different versions of hg38/GRCh38. This post by https://www.biostars.org/...
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C: Trouble de-multiplexing single index paired-end illumina library by
igor ♦ 6.8k
For some odd reason, it's actually easier to demultiplex with QIIME than try to get QIIME to work...
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C: How To Determine If Paired–End Illumina Rnaseq Reads Are Strand–Specific by
igor ♦ 6.8k
There is now a nice compilation of all the different variations of this question: https://www.bio...
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C: manipulating a file by R or bash? by
RamRS ♦ 18k
My statements are based on evidence I've seen over time. They might be a little harsh, but not bo...
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C: How to know that your RNA-seq is stranded or not? by
igor ♦ 6.8k
There are some great answers posted already, but just in case you want to learn more about strand...
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A: ANNOVAR annotate frameshift by
Kevin Blighe ♦ 30k
They are non-frame-shift because your encoding indicates that 2 bases are being substituted by 2 ...
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A: Plink: Understanding LD Clumping vs Pruning by
Kevin Blighe ♦ 30k
It does not seem like an in depth analysis (the link that you posted). If the user feels that clu...
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C: Gene regulatory networks from expression data by
Kevin Blighe ♦ 30k
pixie@bioinfo, please follow up on these questions (by nfs.falsafi) - they are valid questions. T...
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C: Integrate several layers of biological information to build a biological network by
Kevin Blighe ♦ 30k
This is an active area of research and there are, as yet, no concrete solutions. It was a hot top...
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C: To compare assembled transcripts of two species by
h.mon ♦ 20k
Search for orthologs database. For example, OrthoDB and OMA have these genes pre-calculated for you.
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C: To compare assembled transcripts of two species by
valizad2 • 0
Hi, I am interested in doing what you said. I would like to compare genome of human and mouse to...
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