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Error in H5Fopen(file, "H5F_ACC_RDONLY", native = native) : HDF5. File accessibilty. Unable to open file.
software error biomart sleuth rna-seq kallisto written 21 days ago by ladavion • 10
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2
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271
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Using Gencode transcript annotation in Kallisto / Sleuth pipeline
sleuth kallisto gencode rna-seq written 3 months ago by Jordan • 0 • updated 12 weeks ago by brown.annaleigh • 0
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1
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384
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How to subset a sleuth object ? (filter on samples)
R sleuth rna-seq written 10 months ago by alexandra.d38 • 0 • updated 5 months ago by camejo.pamela • 0
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252
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Sleuth analysis with unbalanced categories
sleuth kallisto rna-seq written 12 months ago by dlukacsovich • 0
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R formula in RNA-Seq differential analysis with multiple parameters
R sleuth deseq2 rna-seq statistics written 2.5 years ago by Thibault D. • 690 • updated 12 months ago by Biostar ♦♦ 20
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Kallisto/Sleuth DTE analysis - LRT test results in more DTE compared to Wald test.
sleuth rna-seq written 12 months ago by MK • 0
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1
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474
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1
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Complicated Multi-factor Differential Expression
rnaseq multifactor sleuth differential expression written 17 months ago by gradstudentNew • 30 • updated 17 months ago by Charles Warden ♦ 7.7k
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5 follow
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kallisto + sleuth: no results
R sleuth kallisto rna-seq written 2.8 years ago by stephanie.devos • 0 • updated 17 months ago by gilbo • 20
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Is Sleuth a good package?
R sleuth kallisto rna-seq written 3.6 years ago by SmallChess • 510
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What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
sleuth salmon kallisto rna-seq dte written 3.3 years ago by james.lloyd • 90 • updated 18 months ago by lalvarez • 10
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Problem with plot_bootstrap function in sleuth
R sleuth rna-seq transcriptome written 18 months ago by lalvarez • 10
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How to run sleuth in single run mode?
sleuth kallisto rna-seq written 18 months ago by aquaq • 20
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Is Kallisto Sleuth pipeline suitable for all organisms?
sleuth kallisto rna-seq written 24 months ago by SMILE • 120 • updated 20 months ago by prasundutta87 • 360
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Comparison and cross-sample normalization for RNAseq from different experiments
kalliso normalization sleuth deseq2 rna-seq written 20 months ago by urjaswita • 90 • updated 20 months ago by Devon Ryan ♦ 95k
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Sleuth PCA plots - how to change axis to percentage?
R sleuth pca kallisto rna-seq written 2.8 years ago by BioBing • 120 • updated 23 months ago by bruce.moran • 780
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5 follow
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Paired and Multivariate sleuth
R sleuth kallisto rna-seq written 2.8 years ago by Tim D • 60 • updated 2.0 years ago by samantha_jeschonek • 50
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Sleuth_prep error in R - unused argument
software error R sleuth kallisto rna-seq written 2.2 years ago by Abiterkuile • 20
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add gene names from RefSeq instead of ENSEMBL using biomaRT for sleuth when reading kallisto output
sleuth alignment refseq biomart rna-seq written 2.2 years ago by Abiterkuile • 20 • updated 2.2 years ago by Emily_Ensembl ♦ 20k
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Is there a fair way to compare beta values from Sleuth output to the log Fold changes from EdgeR?
beta value sleuth edger rna-seq fold change written 2.2 years ago by cristina.osuna.cruz • 10
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Kallisto quant output file abundance.tsv and run_info.json missing
sleuth alignment kallisto rna-seq written 2.2 years ago by Abiterkuile • 20 • updated 2.2 years ago by Kevin Blighe ♦ 59k
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kallisto/sleuth for single sample pathway enrichment
sleuth kallisto rna-seq pathway enrichment written 2.3 years ago by endre.sebestyen • 0 • updated 2.3 years ago by Rik Verdonck • 40
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Configuring sleuth for log2FC - What are the dangers?
sleuth rna-seq written 2.3 years ago by Lorenz Becker • 20
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How do I create a Sleuth Wald Test
R sleuth bioconductor rna-seq written 2.3 years ago by scottschu97 • 10 • updated 2.3 years ago by Kevin Blighe ♦ 59k
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Sleuth: What is the correct function for fitting my sleuth object
R sleuth bioconductor rna-seq written 2.3 years ago by scottschu97 • 10 • updated 2.3 years ago by Devon Ryan ♦ 95k
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Sleuth plot_pca function Question
genome R sleuth rna-seq written 2.3 years ago by scottschu97 • 10
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Sleuth Error: System is computationally singular
R sleuth next-gen bioconductor rna-seq written 2.4 years ago by scottschu97 • 10 • updated 2.4 years ago by Brian Gudenas • 90
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9 follow
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Sleuth: Combined lrt and wt tests, clustered heatmap
R sleuth kallisto rna-seq heatmap written 3.5 years ago by bioinfo8 • 120 • updated 2.5 years ago by erdiazval • 40
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Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
sleuth differential-expression rna-seq written 2.8 years ago by elsoja • 110
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Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
R sleuth kallisto rna-seq written 2.9 years ago by BioBing • 120
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ENSEMBL Transcript_Accession ID conversion
ensembl sleuth kallisto rna-seq written 4.2 years ago by dinindu.senanayake • 0 • updated 3.0 years ago by WouterDeCoster ♦ 43k
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