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Sleuth PCA plots - how to change axis to percentage?
R sleuth pca kallisto rna-seq written 11 months ago by BioBing • 90 • updated 29 days ago by bruce.moran • 410
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130
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Is Kallisto Sleuth pipeline suitable for all organisms?
sleuth kallisto rna-seq written 7 weeks ago by SMILE • 50
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681
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Paired and Multivariate sleuth
R sleuth kallisto rna-seq written 11 months ago by Tim D • 30 • updated 8 weeks ago by samantha_jeschonek • 50
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255
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Sleuth_prep error in R - unused argument
software error R sleuth kallisto rna-seq written 4 months ago by Abiterkuile • 20
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293
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add gene names from RefSeq instead of ENSEMBL using biomaRT for sleuth when reading kallisto output
sleuth alignment refseq biomart rna-seq written 4 months ago by Abiterkuile • 20 • updated 4 months ago by Emily_Ensembl ♦ 15k
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Is there a fair way to compare beta values from Sleuth output to the log Fold changes from EdgeR?
beta value sleuth edger rna-seq fold change written 4 months ago by cristina.osuna.cruz • 0
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345
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Kallisto quant output file abundance.tsv and run_info.json missing
sleuth alignment kallisto rna-seq written 4 months ago by Abiterkuile • 20 • updated 4 months ago by Kevin Blighe ♦ 24k
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404
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kallisto/sleuth for single sample pathway enrichment
sleuth kallisto rna-seq pathway enrichment written 4 months ago by endre.sebestyen • 0 • updated 4 months ago by Rik Verdonck • 40
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366
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Configuring sleuth for log2FC - What are the dangers?
sleuth rna-seq written 4 months ago by Lorenz Becker • 0
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431
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1
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How do I create a Sleuth Wald Test
R sleuth bioconductor rna-seq written 5 months ago by scottschu97 • 10 • updated 5 months ago by Kevin Blighe ♦ 24k
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1
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226
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Sleuth: What is the correct function for fitting my sleuth object
R sleuth bioconductor rna-seq written 5 months ago by scottschu97 • 10 • updated 5 months ago by Devon Ryan ♦ 81k
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237
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Sleuth plot_pca function Question
genome R sleuth rna-seq written 5 months ago by scottschu97 • 10
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1
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387
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1
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Sleuth Error: System is computationally singular
R sleuth next-gen bioconductor rna-seq written 6 months ago by scottschu97 • 10 • updated 6 months ago by Brian Gudenas • 90
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1
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396
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R formula in RNA-Seq differential analysis with multiple parameters
R sleuth deseq2 rna-seq statistics written 7 months ago by Thibault D. • 510 • updated 7 months ago by Devon Ryan ♦ 81k
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5 follow
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Sleuth: Combined lrt and wt tests, clustered heatmap
R sleuth kallisto rna-seq heatmap written 19 months ago by bioinfo8 • 90 • updated 7 months ago by erdiazval • 30
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570
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Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
sleuth differential-expression rna-seq written 11 months ago by elsoja • 20
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1
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796
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1
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kallisto + sleuth: no results
R sleuth kallisto rna-seq written 11 months ago by stephanie.devos • 0 • updated 10 months ago by philgev2 • 10
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686
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Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
R sleuth kallisto rna-seq written 13 months ago by BioBing • 90
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2
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ENSEMBL Transcript_Accession ID conversion
ensembl sleuth kallisto rna-seq written 2.3 years ago by dinindu.senanayake • 0 • updated 13 months ago by WouterDeCoster ♦ 30k
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737
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Error: Pathway analysis using Sleuth results
R sleuth pathview rna-seq gage written 18 months ago by bioinfo8 • 90 • updated 13 months ago by bigmawen • 270
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558
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transcript to gene mapping after sleuth run
R sleuth biomart rna-seq kallisto written 14 months ago by bioinfo8 • 90
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1
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531
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1
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Will variance between the number of reads mapped in samples impact my differential analysis?
sleuth kallisto rna-seq written 14 months ago by a.rex • 110 • updated 14 months ago by Istvan Albert ♦♦ 77k
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Understanding Sleuth output for multiple samples
sleuth kallisto rna-seq written 17 months ago by Bharat Iyengar • 230
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What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
sleuth salmon kallisto rna-seq dte written 18 months ago by james.lloyd • 80
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1
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618
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DE analysis of low-expression transcripts
sleuth expression deseq2 rna-seq edger written 18 months ago by elsoja • 20 • updated 18 months ago by Devon Ryan ♦ 81k
2
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0
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749
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Character matrix to Numeric matrix for heatmap
R sleuth next-gen rna-seq written 19 months ago by bioinfo8 • 90
15
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1
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1
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Is Sleuth a good package?
R sleuth kallisto rna-seq written 21 months ago by SmallChess • 450 • updated 21 months ago by Devon Ryan ♦ 81k
4
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1
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1
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How do I obtain logFC values from sleuth results (both genes and isoforms)?
sleuth tutorial rna-seq written 2.2 years ago by cpcantalapiedra • 140 • updated 2.2 years ago by andrew.j.skelton73 ♦ 5.1k
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2
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2.5k
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differential gene expression using sleuth
sleuth kallisto rna-seq written 2.3 years ago by frida.danielsson • 30 • updated 2.2 years ago by cpcantalapiedra • 140
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get gene ids running sleuth kallisto for differential gene expression
sleuth kallisto rna-seq written 2.3 years ago by frida.danielsson • 30
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