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<prev • 36 results • page 1 of 2 • next >
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Sleuth analysis with unbalanced categories
sleuth kallisto rna-seq written 8 weeks ago by dlukacsovich • 0
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821
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R formula in RNA-Seq differential analysis with multiple parameters
R sleuth deseq2 rna-seq statistics written 19 months ago by Thibault D. • 510 • updated 9 weeks ago by Biostar ♦♦ 20
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Kallisto/Sleuth DTE analysis - LRT test results in more DTE compared to Wald test.
sleuth rna-seq written 10 weeks ago by MK • 0
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Complicated Multi-factor Differential Expression
rnaseq multifactor sleuth differential expression written 6 months ago by gradstudentNew • 10 • updated 6 months ago by Charles Warden ♦ 7.0k
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5 follow
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kallisto + sleuth: no results
R sleuth kallisto rna-seq written 23 months ago by stephanie.devos • 0 • updated 7 months ago by gilbo • 20
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Is Sleuth a good package?
R sleuth kallisto rna-seq written 2.8 years ago by SmallChess • 480
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What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
sleuth salmon kallisto rna-seq dte written 2.5 years ago by james.lloyd • 80 • updated 8 months ago by lalvarez • 10
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264
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Problem with plot_bootstrap function in sleuth
R sleuth rna-seq transcriptome written 8 months ago by lalvarez • 10
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320
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How to run sleuth in single run mode?
sleuth kallisto rna-seq written 8 months ago by aquaq • 10
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Is Kallisto Sleuth pipeline suitable for all organisms?
sleuth kallisto rna-seq written 13 months ago by SMILE • 100 • updated 10 months ago by prasundutta87 • 330
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673
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Comparison and cross-sample normalization for RNAseq from different experiments
kalliso normalization sleuth deseq2 rna-seq written 10 months ago by urjaswita • 80 • updated 10 months ago by Devon Ryan ♦ 91k
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Sleuth PCA plots - how to change axis to percentage?
R sleuth pca kallisto rna-seq written 23 months ago by BioBing • 100 • updated 13 months ago by bruce.moran • 620
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Paired and Multivariate sleuth
R sleuth kallisto rna-seq written 23 months ago by Tim D • 50 • updated 14 months ago by samantha_jeschonek • 50
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661
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Sleuth_prep error in R - unused argument
software error R sleuth kallisto rna-seq written 16 months ago by Abiterkuile • 20
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add gene names from RefSeq instead of ENSEMBL using biomaRT for sleuth when reading kallisto output
sleuth alignment refseq biomart rna-seq written 16 months ago by Abiterkuile • 20 • updated 16 months ago by Emily_Ensembl ♦ 18k
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Is there a fair way to compare beta values from Sleuth output to the log Fold changes from EdgeR?
beta value sleuth edger rna-seq fold change written 16 months ago by cristina.osuna.cruz • 0
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Kallisto quant output file abundance.tsv and run_info.json missing
sleuth alignment kallisto rna-seq written 16 months ago by Abiterkuile • 20 • updated 16 months ago by Kevin Blighe ♦ 45k
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kallisto/sleuth for single sample pathway enrichment
sleuth kallisto rna-seq pathway enrichment written 17 months ago by endre.sebestyen • 0 • updated 17 months ago by Rik Verdonck • 60
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Configuring sleuth for log2FC - What are the dangers?
sleuth rna-seq written 17 months ago by Lorenz Becker • 20
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How do I create a Sleuth Wald Test
R sleuth bioconductor rna-seq written 17 months ago by scottschu97 • 10 • updated 17 months ago by Kevin Blighe ♦ 45k
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Sleuth: What is the correct function for fitting my sleuth object
R sleuth bioconductor rna-seq written 17 months ago by scottschu97 • 10 • updated 17 months ago by Devon Ryan ♦ 91k
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562
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Sleuth plot_pca function Question
genome R sleuth rna-seq written 18 months ago by scottschu97 • 10
7
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845
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Sleuth Error: System is computationally singular
R sleuth next-gen bioconductor rna-seq written 18 months ago by scottschu97 • 10 • updated 18 months ago by Brian Gudenas • 90
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9 follow
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Sleuth: Combined lrt and wt tests, clustered heatmap
R sleuth kallisto rna-seq heatmap written 2.6 years ago by bioinfo8 • 120 • updated 20 months ago by erdiazval • 40
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Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
sleuth differential-expression rna-seq written 23 months ago by elsoja • 30
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Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
R sleuth kallisto rna-seq written 2.1 years ago by BioBing • 100
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ENSEMBL Transcript_Accession ID conversion
ensembl sleuth kallisto rna-seq written 3.3 years ago by dinindu.senanayake • 0 • updated 2.1 years ago by WouterDeCoster ♦ 40k
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Error: Pathway analysis using Sleuth results
R sleuth pathview rna-seq gage written 2.6 years ago by bioinfo8 • 120 • updated 2.2 years ago by bigmawen • 310
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transcript to gene mapping after sleuth run
R sleuth biomart rna-seq kallisto written 2.2 years ago by bioinfo8 • 120
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774
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Will variance between the number of reads mapped in samples impact my differential analysis?
sleuth kallisto rna-seq written 2.2 years ago by a.rex • 190 • updated 2.2 years ago by Istvan Albert ♦♦ 80k
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