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<prev • 25 results • page 1 of 1 • next >
0
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90
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Problem in subsetting a gtf based on ids in another file
gtf grep slurm shell bash written 4 weeks ago by newbie • 70
3
votes
1
answer
163
views
1
answer
Best practices to submit a multiple node job in cluster
slurm written 3 months ago by cmanu • 0 • updated 3 months ago by genomax ♦ 87k
7
votes
1
answer
139
views
1
answer
Time ran out in SLURM operation
software error multithreading parallel slurm written 3 months ago by guardsquirrel • 0
0
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1
answer
169
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1
answer
SLURM: running equilibration steps for MD simulation
md simulation slurm sbatch written 4 months ago by asma.nounna • 0
2
votes
1
answer
492
views
1
answer
How to get different outputs for kallisto on multiple samples?
sbatch slurm kallisto rna-seq geneexpression written 5 months ago by Biologist • 190 • updated 5 months ago by swbarnes2 ♦ 8.2k
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339
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0
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OMA not finding numpy; pip and wget failing
wget oma slurm numpy pip written 6 months ago by feander • 0
5
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2
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515
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2
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How to run beast.jar file using Slurm?
phylogeny hpc slurm beast jar written 8 months ago by kabir.deb0353 • 10
0
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2
answers
260
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2
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How to run 2 programme one after another using single SLURM?
slurm parallel written 7 months ago by kabir.deb0353 • 10 • updated 7 months ago by Mensur Dlakic • 6.0k
3
votes
1
answer
192
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1
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How much memory / how many cores should I request for peak calling?
slurm chip-seq written 8 months ago by jrleary • 130 • updated 8 months ago by genomax ♦ 87k
6
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3
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1.0k
views
6 follow
3
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Python and SLURM environment : clarifications needed
python slurm written 11 months ago by Rox • 1.2k • updated 10 months ago by Biostar ♦♦ 20
0
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1
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515
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1
answer
toil-cwl-runner on slurm: toil.batchSystems.singleMachine maxMemory limit?
toil slurm cwl singularity written 13 months ago by alanh • 80 • updated 13 months ago by Michael R. Crusoe • 1.8k
2
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1
answer
1.9k
views
1
answer
CWL: SLurm Job Sheduler
slurm cwl written 3.2 years ago by kevin.o.oluoch • 70 • updated 15 months ago by Biostar ♦♦ 20
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865
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0
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How to call a R variable in a loop with Slurm?
R slurm matrix written 15 months ago by vincentpailler • 140
1
vote
1
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614
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7 follow
1
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Distribute proportionality calculations on many nodes (SLURM)
matrix slurm correlation parallelization written 16 months ago by vincentpailler • 140 • updated 16 months ago by Jean-Karim Heriche ♦ 23k
1
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0
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393
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0
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slurm Exceeded step memory limit: Interleaving FastQ files
fastq slurm written 16 months ago by Biogeek • 400
1
vote
2
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1.7k
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2
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snakemake on slurm cluster - jobs not updating/submitting after checkpoints? (Error submitting jobscript (exit code 1):)
software error slurm snakemake written 17 months ago by Berghopper • 20
1
vote
1
answer
521
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1
answer
Best way running OMA using SLURM
oma slurm written 18 months ago by dimar.gonzalez.soto • 0 • updated 18 months ago by adrian.altenhoff • 650
5
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1
answer
2.7k
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6 follow
1
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How to submit multithreaded jobs on SLURM and determine number of threads?
slurm written 23 months ago by steve • 2.6k • updated 23 months ago by Devon Ryan ♦ 96k
2
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2
answers
1.1k
views
2
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usage of OMA on a HPC cluster with slurm
oma slurm written 2.6 years ago by Yang • 0
2
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2
answers
1.1k
views
2
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Failure to launch OMA in array mode on SLURM cluster
orthologs oma slurm written 2.8 years ago by jeremias.br • 10
5
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0
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1.2k
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0
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Tutorial: Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment
slurm parallelization meme parallel tutorial written 2.9 years ago by Alex Reynolds ♦ 30k
1
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1
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5.1k
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1
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How to set $TMPDIR in a parallel processing
hpc gun parallel slurm written 5.0 years ago by lisadavic66 • 0 • updated 3.3 years ago by el.unico.joe • 0
2
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0
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678
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0
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any recommendations about public computer clusters?
slurm computer cluster written 3.4 years ago by vmicrobio • 250
1
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0
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1.6k
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0
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Cufflinks: exceeded memory limit (31836604 > 31457280), being killed
memory limit cufflinks slurm written 4.2 years ago by debitboro • 180
6
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3
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1.7k
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3
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Errors attempting to start OMA job on SLURM-managed cluster
oma slurm written 4.4 years ago by Adamc • 640 • updated 4.4 years ago by adrian.altenhoff • 650
<prev • 25 results • page 1 of 1 • next >
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