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454

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usage of OMA on a HPC cluster with slurm

oma slurm written 6 months ago by Young • 0

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503

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Failure to launch OMA in array mode on SLURM cluster

orthologs oma slurm written 9 months ago by jeremias.br • 10

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451

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Tutorial: Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment

slurm parallelization meme parallel tutorial written 10 months ago by Alex Reynolds ♦ 24k

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653

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CWL: SLurm Job Sheduler

slurm cwl written 13 months ago by kevin.o.oluoch • 60 • updated 13 months ago by Michael R. Crusoe • 1.0k

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2.5k

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How to set $TMPDIR in a parallel processing

hpc gun parallel slurm written 3.0 years ago by lisadavic66 • 0 • updated 15 months ago by el.unico.joe • 0

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369

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any recommendations about public computer clusters?

slurm computer cluster written 16 months ago by haro • 220

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905

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Cufflinks: exceeded memory limit (31836604 > 31457280), being killed

memory limit cufflinks slurm written 2.2 years ago by debitboro • 80

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1.0k

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Errors attempting to start OMA job on SLURM-managed cluster

oma slurm written 2.4 years ago by Adamc • 540 • updated 2.3 years ago by adrian.altenhoff • 380

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Recent Replies

C: How do you decide the minimum length for the adapter that needs trimming for sma by MAPK • 1.2k
Sorry. My original question was a bit confusing, I have just edited my question. I want to unders...
A: How to use GSNAP/GMAP for mm10 genome by genomax ♦ 52k
This is the [GENCODE official data page][1] for all things related to mouse genome. You will find...
C: How do you decide the kmer or the sliding window for the adapter that needs trim by genomax ♦ 52k
I though this answered your question about adapters: https://www.biostars.org/p/327802/#328051 Y...
A: Understanding Annovar Output by h.mon ♦ 16k
There is an ANNOVAR intro here: [Introduction to VCF file and some of its complications][1] And...
A: Understanding Annovar Output by newbinf • 0
I realize that DP:RD:AD is total reads: reference allele reads: alternative allele reads. Please...
A: Is Position In Vcf File 1-Based (First Index Is At 1 Not 0)? by Shicheng Guo • 5.0k
Just remember no matter 0 based or 1 based, the later number will be the position for that base, ...
C: Long DNA reads aligned by tarek.mohamed • 180
I am trying to call SNPs and indels, but all the tools I found are compatible with bam files gene...
C: Resources for gene signature creation by Kevin Blighe ♦ 24k
Okay. `MyOutcomeTrait` is the variable that you're modelling, i.e., the `y` variable. For exampl...
C: Convert ATGC in PLINK to illumina AB by Kevin Blighe ♦ 24k
`--recode12` is no the same. The Illumina AB format is quite specific, often called *TOP / BOT* f...
C: genome sequence look up tool by evcon • 0
Thanks! This is perfect! Knew this had to exist already.
C: miRNA-seq Trimmomatic adapter file by WouterDeCoster ♦ 30k
I have adapted your title to make it more explicit.
A: SNP Analysis on Single Cell Data from 10x by droseeee • 0
Hi, I am attempting to do the same. Has anyone figured out a method with R? Thanks!!

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