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<prev • 26 results • page 1 of 1 • next >
2
votes
0
answers
70
views
0
answers
How to get the output on multiple files into one file in sbatch script?
rseqc slurm sbtach strand rna-seq written 16 days ago by newbie • 90
0
votes
0
answers
148
views
0
answers
Problem in subsetting a gtf based on ids in another file
gtf grep slurm shell bash written 3 months ago by newbie • 90
3
votes
1
answer
221
views
1
answer
Best practices to submit a multiple node job in cluster
slurm written 6 months ago by cmanu • 0 • updated 6 months ago by genomax ♦ 91k
7
votes
1
answer
179
views
1
answer
Time ran out in SLURM operation
software error multithreading parallel slurm written 6 months ago by guardsquirrel • 0
0
votes
1
answer
219
views
1
answer
SLURM: running equilibration steps for MD simulation
md simulation slurm sbatch written 7 months ago by asma.nounna • 0
2
votes
1
answer
671
views
1
answer
How to get different outputs for kallisto on multiple samples?
sbatch slurm kallisto rna-seq geneexpression written 8 months ago by Biologist • 190 • updated 8 months ago by swbarnes2 ♦ 8.9k
1
vote
0
answers
423
views
0
answers
OMA not finding numpy; pip and wget failing
wget oma slurm numpy pip written 9 months ago by feander • 0
5
votes
2
answers
641
views
2
answers
How to run beast.jar file using Slurm?
phylogeny hpc slurm beast jar written 11 months ago by kabir.deb0353 • 10
0
votes
2
answers
350
views
2
answers
How to run 2 programme one after another using single SLURM?
slurm parallel written 10 months ago by kabir.deb0353 • 10 • updated 10 months ago by Mensur Dlakic • 6.9k
3
votes
1
answer
287
views
1
answer
How much memory / how many cores should I request for peak calling?
slurm chip-seq written 11 months ago by jrleary • 130 • updated 11 months ago by genomax ♦ 91k
6
votes
3
answers
1.3k
views
6 follow
3
answers
Python and SLURM environment : clarifications needed
python slurm written 14 months ago by Rox • 1.2k • updated 12 months ago by Biostar ♦♦ 20
0
votes
1
answer
623
views
1
answer
toil-cwl-runner on slurm: toil.batchSystems.singleMachine maxMemory limit?
toil slurm cwl singularity written 16 months ago by alanh • 80 • updated 16 months ago by Michael R. Crusoe • 1.8k
2
votes
1
answer
2.1k
views
1
answer
CWL: SLurm Job Sheduler
slurm cwl written 3.4 years ago by kevin.o.oluoch • 70 • updated 17 months ago by Biostar ♦♦ 20
0
votes
0
answers
1.1k
views
0
answers
How to call a R variable in a loop with Slurm?
R slurm matrix written 17 months ago by pablo • 140
1
vote
1
answer
682
views
7 follow
1
answer
Distribute proportionality calculations on many nodes (SLURM)
matrix slurm correlation parallelization written 19 months ago by pablo • 140 • updated 19 months ago by Jean-Karim Heriche ♦ 23k
1
vote
0
answers
431
views
0
answers
slurm Exceeded step memory limit: Interleaving FastQ files
fastq slurm written 19 months ago by Biogeek • 400
1
vote
2
answers
1.9k
views
2
answers
snakemake on slurm cluster - jobs not updating/submitting after checkpoints? (Error submitting jobscript (exit code 1):)
software error slurm snakemake written 19 months ago by Berghopper • 20
1
vote
1
answer
570
views
1
answer
Best way running OMA using SLURM
oma slurm written 21 months ago by dimar.gonzalez.soto • 0 • updated 21 months ago by adrian.altenhoff • 700
5
votes
1
answer
3.2k
views
6 follow
1
answer
How to submit multithreaded jobs on SLURM and determine number of threads?
slurm written 2.1 years ago by steve • 2.6k • updated 2.1 years ago by Devon Ryan ♦ 97k
2
votes
2
answers
1.2k
views
2
answers
usage of OMA on a HPC cluster with slurm
oma slurm written 2.8 years ago by Yang • 0
2
votes
2
answers
1.2k
views
2
answers
Failure to launch OMA in array mode on SLURM cluster
orthologs oma slurm written 3.0 years ago by jeremias.br • 10
5
votes
0
answers
1.2k
views
0
answers
Tutorial: Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment
slurm parallelization meme parallel tutorial written 3.1 years ago by Alex Reynolds ♦ 31k
1
vote
1
answer
5.3k
views
1
answer
How to set $TMPDIR in a parallel processing
hpc gun parallel slurm written 5.3 years ago by lisadavic66 • 0 • updated 3.6 years ago by el.unico.joe • 0
2
votes
0
answers
703
views
0
answers
any recommendations about public computer clusters?
slurm computer cluster written 3.6 years ago by vmicrobio • 250
1
vote
0
answers
1.7k
views
0
answers
Cufflinks: exceeded memory limit (31836604 > 31457280), being killed
memory limit cufflinks slurm written 4.5 years ago by debitboro • 180
6
votes
3
answers
1.8k
views
3
answers
Errors attempting to start OMA job on SLURM-managed cluster
oma slurm written 4.6 years ago by Adamc • 640 • updated 4.6 years ago by adrian.altenhoff • 700
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