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Failure to launch OMA in array mode on SLURM cluster

orthologs oma slurm written 2 days ago by jeremias.br • 10

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161

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Tutorial: Installing multiprocessor-capable MEME to work with a Slurm job scheduler environment

slurm parallelization meme parallel tutorial written 4 weeks ago by Alex Reynolds ♦ 21k

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263

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CWL: SLurm Job Sheduler

slurm cwl written 4 months ago by kevin.o.oluoch • 50 • updated 4 months ago by Michael R. Crusoe • 690

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1.7k

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How to set $TMPDIR in a parallel processing

hpc gun parallel slurm written 2.2 years ago by lisadavic66 • 0 • updated 6 months ago by el.unico.joe • 0

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215

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any recommendations about public computer clusters?

slurm computer cluster written 7 months ago by haro • 200

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565

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Cufflinks: exceeded memory limit (31836604 > 31457280), being killed

memory limit cufflinks slurm written 17 months ago by debitboro • 70

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749

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Errors attempting to start OMA job on SLURM-managed cluster

oma slurm written 19 months ago by Adamc • 520 • updated 19 months ago by adrian.altenhoff • 300

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Recent Replies

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I think you should elaborate more your question. What kind of data you have?
A: Differential expression gene list from TCGA level 3 RNASeq V2 datasets downloade by snoopy84 • 0
I have the same doubt here. What is the best method to calculate DE genes from RSEM data (TCGA)....
A: Download complete bacterial genomes and associated plasmid sequences from NCBI by alceal • 0
Did you get to automate it? Because I need to do the same. What I did is downloaded the CSV and l...
C: Ensembl protein counts by cdsouthan • 1.7k
Seeing as I may finally get round to revising https://www.ncbi.nlm.nih.gov/pubmed/28529709 I wou...
C: Install DESeq2 and edgeR with Anaconda by Jeremy Leipzig ♦ 17k
if you don't have sudo create an environment first conda create -n myawesomeenvironment pyth...
A: Install DESeq2 and edgeR with Anaconda by Linkrw12 • 0
Adding this for completeness sake: Sometimes Bioconductor packages will not be in the bioconda r...
C: denovo assembly of unmapped reads by ashish • 110
Thanks Macspider, I got it.
C: How to display a VCF/BCF file or stream as a paginated table in a python web fra by Jeremy Leipzig ♦ 17k
both of them (old xbrowse and varify) are not going to scale beyond a couple trios seqr is the n...
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It's also a **lot** less accurate by many other benchmarks. I would not recommend samtools for va...
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Since example.evec should be an output from smartpca step, and its the input for evec2pca.perl st...
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I know this post is really old, but if anyone is still looking for the answer to this (like I was...
A: What is the actual cause of excessive zeroes in single cell RNA-seq data? Is it by george.ry • 1.0k
There's a variety of things at play here, but a few main things. Others can probably add some ex...

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