snp annotation Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answers

142

views

answers

an error occurring after run the annovar commad ,

snp annotation written 7 months ago by 543541656 • 20 • updated 7 months ago by Kevin Blighe ♦ 69k

votes

answer

3.6k

views

answer

Annovar - SIFT prediction: Multiple transcripts, which transcript is used for scoring?

snp annotation annovar sift snp prediction written 5.9 years ago by vw • 30 • updated 5.9 years ago by dandan • 350

Recent Votes

Recent Locations • All »

Germany, just now
Sheffield, UK, 1 minute ago

Recent Awards • All »

Good Answer to GenoMax ♦ 94k
Scholar to 6schulte • 20
Scholar to Gordon Smyth • 2.1k
Teacher to Pierre Lindenbaum ♦ 132k
Scholar to Pierre Lindenbaum ♦ 132k
Teacher to Mensur Dlakic • 8.1k

Recent Replies

C: macs3 peak calling usage by GenoMax ♦ 94k
https://www.biostars.org/u/62260/ : Please do not delete questions once they have received commen...
C: sortmerna terminates without generating the file with rRNA being removed by bioinformatics.queries • 20
In answer to your question. 1. I did run on HPC cluster and we use `sbatch` to run the command....
C: Apple M1 processor for bioinformactics by Alex Reynolds ♦ 31k
A port of Linux compatible with the M1 is being worked on. More information here: https://www.pat...
C: How to determine SC-RNA-SEQ QC filter thresholds in Seurat? by dlmatera • 10
What is shown in the image was simply VlnPlots after creating a Seurat object with the raw GEO da...
C: Why did I get very poor scRNAseq files through STARSolo, Galaxy. by ATpoint ♦ 44k
Without code it is almost impossible to help. Getting only 43 cells suggests that something is ve...
A: Location of the peaks from CHIP-seq data in the genome by GK1610 • 90
chipseeker http://bioconductor.org/packages/devel/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker....
C: merge vcf files from different tools by Pierre Lindenbaum ♦ 132k
what was your command ? what were those two variants ?
C: genes not mapping to ENTREZID by joe • 150
How did you come up with your gene list? Do you expect the genes to be coding/novel? Try BLASTing...
C: Design and contrast matrices for including batch effect by kris275 • 0
Dear swbarnes2, thank you for your reply. In this case the experiment was done in different **b...
C: Subseq a FASTA file by lieven.sterck ♦ 9.4k
or you sure you are using a multiline fasta? With 'multiline' we mean that the sequence is block...
C: genes not mapping to ENTREZID by Kevin Blighe ♦ 69k
They may be non-coding RNAs or just predicted genes, or something else. Can you paste a few IDs? ...
A: Make tblastn run faster by 6schulte • 20
Maybe you are requesting your computer to do too many threads when multi-threading? I have had th...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 2034 users visited in the last hour