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40
votes
6
answers
61k
views
16 follow
6
answers
Synonymous And Non-Synonymous Snps
non snp written 9.7 years ago by Elena240 • updated 5.6 years ago by HG1.1k
31
votes
3
answers
49k
views
7 follow
3
answers
Minor allele frequency calculation
next-gen snp written 5.9 years ago by Tark50 • updated 18 months ago by pltbiotech_tkarthi180
109
votes
8
answers
41k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.4 years ago by Matthieu460 • updated 4.5 years ago by alexisdereeper30
54
votes
4
answers
37k
views
32 follow
4
answers
Filtering Vcf File
vcf indel vcftools snp written 8.1 years ago by bioinfo790 • updated 2.9 years ago by DataFanatic260
37
votes
2
answers
36k
views
6 follow
2
answers
What Is Snp Calling?
next-gen snp sequencing written 10.4 years ago by Giovanni M Dall'Olio27k • updated 9.7 years ago by Joesoap0
59
votes
4
answers
36k
views
29 follow
4
answers
How To Analyze Imputed Gwas Data
gwas imputation plink snp R written 9.5 years ago by Stephen2.7k • updated 3 months ago by Mahan70
49
votes
7
answers
36k
views
18 follow
7
answers
How Can I Merge A Large Amount Of Vcf Files?
vcf merge vcftools snp written 8.2 years ago by Matt W240 • updated 2.2 years ago by ATpoint38k
81
votes
5
answers
35k
views
21 follow
5
answers
Ti/Tv Ratio Confirms Snp Discovery. Is This A General Rule?
snp written 9.7 years ago by Yahan200 • updated 28 days ago by Biostar ♦♦ 20
68
votes
7
answers
31k
views
38 follow
7
answers
Plotting Density Of Snps On Chromosomes
snp plot written 8.5 years ago by Leszek4.1k • updated 3.1 years ago by kaixian1100
10
votes
2
answers
27k
views
6 follow
2
answers
How to compare 2 VCF files
vcf tool snp written 6.4 years ago by Parimala Devi70 • updated 6.1 years ago by Pablo1.9k
96
votes
8
answers
26k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 10.5 years ago by Pierre Lindenbaum130k • updated 6.9 years ago by Biostar ♦♦ 20
21
votes
2
answers
25k
views
8 follow
2
answers
Snp, Dip, Snv Notation
snp written 9.3 years ago by 2184687-1231-83-5.0k • updated 5.8 years ago by scott.a.fay0
28
votes
3
answers
25k
views
8 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 9.2 years ago by Tiffani150 • updated 9.2 years ago by Chris Miller21k
39
votes
6
answers
24k
views
17 follow
6
answers
Sift Or Polyphen
non mutation snp written 9.5 years ago by Dataminer2.7k • updated 10 months ago by always_learning1.0k
17
votes
2
answers
23k
views
2
answers
Convert plink files to VCF: Reference allele file
genome snp written 5.1 years ago by Ishtiaq Ahmad Khan70 • updated 4.1 years ago by willgilks300
55
votes
6
answers
23k
views
27 follow
6
answers
Get rs number based on position
mysql snp ucsc written 9.3 years ago by Zach Stednick650 • updated 22 months ago by zx87549.6k
20
votes
8
answers
23k
views
6 follow
8
answers
how to unzip the files in batch?
next-gen alignment rna-seq snp written 5.4 years ago by flavobacteria50 • updated 2.4 years ago by saraholiver3070
29
votes
3
answers
22k
views
17 follow
3
answers
How Can I Count Snps In My Vcf Files?
vcf snp awk written 8.2 years ago by Matt W240 • updated 5.1 years ago by ravi.uhdnis180
34
votes
3
answers
22k
views
14 follow
3
answers
36
votes
2
answers
22k
views
15 follow
2
answers
Homozygous Indel/Snp & Heterozygous Indel/Snp
snp written 7.1 years ago by always_learning1.0k • updated 3.2 years ago by ibseq120
97
votes
11
answers
22k
views
18 follow
11
answers
Disease Associated Snps
gwas database snp written 10.3 years ago by pixie@bioinfo1.4k • updated 6.7 years ago by vaibhav0
30
votes
6
answers
21k
views
26 follow
6
answers
Amino Acid Change To Genomic Location
amino-acids snp written 8.7 years ago by Preethi110 • updated 4.7 years ago by michael.d.mclellan150
4
votes
2
answers
21k
views
7 follow
2
answers
How To Get Chromosome Position Given Rs Number?
position snp chromosome written 6.9 years ago by chrismas050 • updated 6.9 years ago by Emily_Ensembl21k
6
votes
1
answer
20k
views
1
answer
Bcftools view options for SNPs calling.
bcftools samtools snp mpileup written 5.2 years ago by Eddie_I30 • updated 2.1 years ago by Kevin Blighe65k
16
votes
3
answers
20k
views
8 follow
3
answers
Create VCF file from .bim, .fam and .bed file
vcf plinkseq snp written 6.1 years ago by hellbio420 • updated 3.0 years ago by DataFanatic260
16
votes
2
answers
20k
views
2
answers
GT and GL fields in VCF file
vcf snp written 5.9 years ago by ChIP570 • updated 5.9 years ago by Cytosine450
21
votes
2
answers
20k
views
2
answers
How to extract sample id using bcftools or vcftools
vcf bcftools vcftools snp written 5.4 years ago by xinhui.wang250 • updated 22 months ago by zx87549.6k
18
votes
4
answers
20k
views
11 follow
4
answers
Reading Genotyping Data From Illumina Genomestudio Into R
R bioconductor illumina snp genotyping written 10.1 years ago by Farrel200 • updated 10.1 years ago by Abc10
24
votes
2
answers
19k
views
13 follow
2
answers
Tcga: "Tumor, Matched Normal" Vs. "Normal, Matched Tumor"
somatic tcga snp written 6.8 years ago by Mdeng510 • updated 5.8 years ago by Chirag Nepal2.2k
56
votes
4
answers
19k
views
26 follow
4
answers
How To Map A Snp To A Gene Around +/- 60Kb ?
data snp human annotation written 10.5 years ago by Khader Shameer18k • updated 10.5 years ago by Aaronquinlan11k
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