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Detailed process for building snpEff database for NCBI RefSeq genomes?
genome database snpeff written 10 days ago by fwuffy • 100
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How does SnpEff discriminate between transcripts?
vcf snpeff uniprot transcripts written 18 days ago by Maxime • 0
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Tutorial: Human mitochondrial DNA annotation in SnpEff
annotation tutorial snpeff chrmt snp written 5 weeks ago by Arup Ghosh ♦ 2.6k
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snpEff killed while reading genome version
snpeff snp written 3 months ago by j.lunger18 • 10 • updated 7 weeks ago by Biostar ♦♦ 20
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Phasing and de novo finding from VCF file
vcf de novo snpeff written 7 weeks ago by Maxime • 0 • updated 7 weeks ago by Pierre Lindenbaum ♦ 129k
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Why snpEff annotates same region with different "effects" and why some effects are given in combination? What is the criteria to filter this annotation?
exome vcf snpeff vep variantannotation written 8 weeks ago by svp • 100
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SNP annotation using snpEFF
vcf annotation snpeff snp written 9 weeks ago by shrutidabral • 10 • updated 9 weeks ago by Pierre Lindenbaum ♦ 129k
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Varscan2 somatic output annotation with snpEff -cancer option
annotation snpeff varscan2 variant sequencing written 10 weeks ago by jobrien • 0
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SnpEff: How to match variants with line ID in 1001 Genomes Project?
snpeff snp sequencing written 14 months ago by chase.lewis • 40 • updated 11 weeks ago by brunotgaraupaula • 0
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SNPEFF genome build with specific codon usage
annotation snpeff variants written 3 months ago by Stephane Plaisance • 410 • updated 11 weeks ago by Biostar ♦♦ 20
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Getting reports (HTML/txt) for already annotated (SnpEff) vcf files and phasing/de novo findings
vcf snpeff written 12 weeks ago by Maxime • 0
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127
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Variant effect prediction
polyphen sift snpeff written 3 months ago by wrab425 • 20
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Reference genome for snpEff
vcf assembly snpeff written 3 months ago by j.lunger18 • 10
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understanding snpEff/snpSift concordance output
snpsift snpeff snp concordance written 3 months ago by rcappa • 0
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Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 5.5 years ago by Marina Manrique • 1.3k • updated 3 months ago by tsy19900929 • 0
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Fail to build a database in SNPeff
build_data_base snpeff written 3 months ago by r00628112 • 10 • updated 3 months ago by ATpoint ♦ 36k
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Fatal error reading file snpEff.config with SnpEff
variant calling snpeff fatal error written 3 months ago by aguiller.mateos • 0
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Running snpeff in cancer analysis mode
somatic vs germaline snpeff written 3 months ago by atheeth14 • 0 • updated 3 months ago by Kevin Blighe ♦ 63k
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using snpEff with custom genome
annotation snpeff snp written 3 months ago by etay.rot • 10
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snpEff and SIFT calculation
sift snpeff written 3 months ago by misterie • 90
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snpEff: Single variants are double-counted in Ts/Tv summary
ti/tv ratio snpeff ts/tv ratio written 4 months ago by kenyonalexander0 • 0
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SnpSift Annotate replace ID column
snpsift annotation snps snpeff written 5 months ago by Jimbou • 770 • updated 5 months ago by Nicholas Mancuso • 70
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How to establish a new annotation library in snpEff
snpeff written 7 months ago by r00628112 • 10
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SnpEff database with maker annotation format
snpeff maker written 8 months ago by Picasa • 540 • updated 8 months ago by prince26121991 • 70
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What is optimal distance to scan for genes near SNPs for pathway overrepresentation analysis?
pathways snpeff pathway analysis snp gwas written 8 months ago by rimgubaev • 180
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How to annotate only closest SNP using SnpEff?
annotation snpeff snp written 8 months ago by rimgubaev • 180
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SnpEff question for Variant annotation
gene vcf next-gen snpeff written 8 months ago by mandar.bedse • 0 • updated 8 months ago by Pierre Lindenbaum ♦ 129k
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Ways to improve SnpEff prediction
snpeff snp written 9 months ago by Mohammed • 10 • updated 9 months ago by zx8754 ♦ 9.4k
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GC overhead error [java.lang.OutOfMemoryError] while running snpEFF version 4.1
next-gen snpeff written 9 months ago by halo22 • 150
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snpEff building new database ERROR
database snpeff new written 18 months ago by Anastasia A. • 0 • updated 10 months ago by arif.ashraf.opu • 20
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