Showing: snpeffreset
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4
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snpEff: wrong HGVS output?
hgvs snpeff written 12 days ago by Marvin120 • updated 4 days ago by WouterDeCoster32k
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106
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how to extract gene name for LOF (loss of function) variants
snpeff lof variants written 6 weeks ago by reza190 • updated 6 weeks ago by Pierre Lindenbaum112k
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121
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build databses for genome using snpEff
annotation snpeff snp written 7 weeks ago by StudentBio0 • updated 7 weeks ago by finswimmer5.5k
4
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1
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5 follow
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more than one annotation at a locus in SnpEff output?
snpeff written 19 months ago by sun.nation120 • updated 8 weeks ago by jilguero88810
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3
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3
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Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 3.7 years ago by Marina Manrique1.3k • updated 8 weeks ago by sutturka120
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1
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154
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1
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SNP difference between isolates
mycobacterium tuberculosis snpeff snp written 9 weeks ago by sanjay.bpkihs0 • updated 9 weeks ago by Medhat7.7k
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1
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How to Get only one annotation with the SnpEff annotation?
annotation variation snpeff snp written 10 weeks ago by mhmtgenc8530 • updated 10 weeks ago by Pierre Lindenbaum112k
2
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106
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1
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2
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323
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Annotation with snpEFF
vcf annotation extractfields snpeff written 3 months ago by Nandini670 • updated 11 weeks ago by Biostar ♦♦ 20
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SNPEff not showing SNP
annotation forum snpeff variant snp written 5 months ago by sanjay.bpkihs0 • updated 3 months ago by cpad01129.0k
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I need help to create 2 SNPEFF databases (v1.01/v2.01) of Pinus taeda
snpeff written 3 months ago by nie shuai0 • updated 3 months ago by Biostar ♦♦ 20
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3
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3
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number of functions is more than namber of variants in snpEff's output
next-gen snpeff snp written 18 months ago by reza190 • updated 4 months ago by finswimmer5.5k
2
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snpEFF chr not found error bacterial genome
annotation snpeff snp written 3.8 years ago by SemiQuant30 • updated 5 months ago by sanjay.bpkihs0
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220
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320
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SnpSift doesn't show any VariantType for filtering
snpsift snpeff filtering mutations written 9 months ago by Bioinfo240 • updated 8 months ago by Biostar ♦♦ 20
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Mutation analysis on RNAseq
next-gen snpeff mutation rna-seq snp written 24 months ago by Ron810 • updated 9 months ago by QVINTVS_FABIVS_MAXIMVS2.1k
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534
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Annotation of VCF file
vcf snpeff mutation written 9 months ago by Bioinfo240 • updated 9 months ago by WouterDeCoster32k
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SnpEff html and .vcf file result are not matching
vcf snpeff tool snp written 13 months ago by misbahabas60 • updated 11 months ago by Biostar ♦♦ 20
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[solved] SnpEff reports intron variants in exons ?
annotation snpeff exome-seq snp written 11 months ago by badredda50 • updated 11 months ago by cpad01129.0k
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Error while building new database for SnpEff
database snpeff snp sequencing written 2.2 years ago by mjones13370 • updated 14 months ago by Santosh Anand3.9k
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Is SNPeff still the standard for variant effect prediction?
exome annotation snpeff variant written 14 months ago by Lauren20 • updated 14 months ago by Samuel Brady240
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