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<prev • 115 results • page 1 of 4 • next >
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snpEff Error - Stop progressing after Predicting variants
snpeff hg19 written 1 day ago by woojoy14 • 0
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1
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snpEff: Fatal error reading file the input VCF files and stop runing
snpeff fetal error written 5 weeks ago by Shicheng Guo • 7.6k
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snpEff for bacteria genome
snpeff written 6 weeks ago by maricom • 0
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115
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 6 weeks ago by felipead66 • 30 • updated 6 weeks ago by RamRS ♦ 23k
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8 follow
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Is SNPeff still the standard for variant effect prediction?
exome annotation snpeff variant written 2.0 years ago by Lauren • 50 • updated 7 weeks ago by Shicheng Guo • 7.6k
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SnpEff: How to match variants with line ID in 1001 Genomes Project?
snpeff snp sequencing written 7 weeks ago by chase.lewis • 40 • updated 7 weeks ago by zx8754 ♦ 7.8k
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128
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fasta sequences from snpeff output file
fasta snpeff written 7 weeks ago by felipead66 • 30
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120
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snpEff output gets zero results for synonymous SNPs
snpeff synonymous written 8 weeks ago by felipead66 • 30 • updated 8 weeks ago by finswimmer ♦ 11k
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Filter vcf file using coordinate of bed , the result is SnpSift had filtered some wrong items, why ?
snpsift vcf snpeff snp written 8 weeks ago by duolin1 • 10 • updated 8 weeks ago by zx8754 ♦ 7.8k
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SnpEff HGVS doesn't match to fields of ref and alt alleles
hgvs annotation snpeff snp variant annotation written 10 weeks ago by mariafirulevabio • 30
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snpEff - ERROR_CHROMOSOME_NOT_FOUND
snpeff written 10 weeks ago by ar.satkhol18 • 0 • updated 10 weeks ago by WouterDeCoster ♦ 40k
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Which reference genome for the annotation of the 1KG variant data by snpEff?
snpeff reference genome variant annotation written 10 weeks ago by Nam Le Quang • 70
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SnPEff ANN[*].FEATURE and ANN[*].FEATUREID annotation
structural_interaction_variant snpeff written 10 weeks ago by yasminsoareslima • 10 • updated 10 weeks ago by RamRS ♦ 23k
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SNP annotation with R and SnpEff
R snpeff snp written 20 months ago by wpierrick • 80 • updated 10 weeks ago by zx8754 ♦ 7.8k
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SnpEff START/STOP codon not found error
software error snpeff snp written 3 months ago by thomasbersez • 30 • updated 3 months ago by Biostar ♦♦ 20
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145
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Snpeff for predicting snp effect
snpeff snp written 3 months ago by manjumoorthy95 • 10
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6 follow
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Downstream analysis of VCF files obtained from VarScan2
vcf wes snpeff varscan2 somatic variations written 7 months ago by Raheleh • 70 • updated 3 months ago by bari.ballew • 120
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More general annotation using snpEff
genome annotation snpeff written 5 months ago by bwczech • 70
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5 follow
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snpEff building new database ERROR
database snpeff new written 6 months ago by Anastasia A. • 0 • updated 6 months ago by Vitis • 2.2k
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Annotating Mycobacterium tuberculosis VCF file using snpEFF and aNNOVAR
annotation snpeff mtb snp annovar written 6 months ago by S AR • 50
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several effect for one SNP annotated by SNPeff
annotation snpeff snp written 7 months ago by reza • 210
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1
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Annotate VCF on specific transcripts (ANN field)
vcf snpsift snpeff written 7 months ago by FGV • 110 • updated 7 months ago by Pierre Lindenbaum ♦ 121k
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Why snpEff annotation give different names to one same gene?
mtdna snpeff written 8 months ago by MatthewP • 190 • updated 8 months ago by jared.andrews07 • 2.7k
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Summary statistics of VCF annotated files (snpEff)
vcf annotation snpeff statistics written 8 months ago by bwczech • 70
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"count"in the snpEFF html output
snpeff written 8 months ago by lifang5389 • 0
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snpEff assigned all variants as modifier intergenic
vcf ngs snpeff written 8 months ago by bwczech • 70
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snpEff: wrong HGVS output?
hgvs snpeff written 10 months ago by Marvin • 150 • updated 10 months ago by WouterDeCoster ♦ 40k
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How to fetch GFF information for genome downloaded from ENA?
genome annotation snpeff snp oryza written 10 months ago by athulmenonk • 0 • updated 10 months ago by WouterDeCoster ♦ 40k
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Running vcf2maf on snpeff-annotated vcfs
snpeff vcf2maf written 12 months ago by becky3.a • 0
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5 follow
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Identify or update refseq transcript version on snpeff
ngs snpeff refseq variant-annotation written 11 months ago by Nandini • 820
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