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<prev • 151 results • page 1 of 6 • next >
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Snpefftomaf error: Changing the format column in vcf file
vcf maf snpefftomaf snpeff written 14 days ago by Ash • 10
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101
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versioned transcripts with SnpEff GRCh37
annotation snpeff written 4 weeks ago by nickhir • 20
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1
answer
141
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1
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SNPEff output meaning
snpeff snp written 7 weeks ago by simone.castellana • 10 • updated 7 weeks ago by evolozzy • 40
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1
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203
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1
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Error with gff file while building snpeff database
gff snpeff java error written 8 weeks ago by kristina.mahan • 120 • updated 8 weeks ago by Fatima • 890
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How to get input for provean from vcf files annotated by snpeff?
vcf provean snpeff written 6.1 years ago by shl198 • 410 • updated 9 weeks ago by predeus • 1.4k
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snpEff- HGVS annotation
hgvs snpeff written 11 weeks ago by sumudu_rangika • 30
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Conflicts in the VCF file
vcf gwas snpeff sequence sequencing written 3 months ago by Negin • 0 • updated 3 months ago by _r_am ♦ 32k
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5 follow
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Vcf file with 3 samples and trying to count how many mutations for each sample
vcf snpeff bcftools written 5 months ago by kadamek49 • 0 • updated 4 months ago by Jorge Amigo ♦ 12k
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snpEFF chr not found error bacterial genome
annotation snpeff snp written 6.1 years ago by SemiQuant • 70 • updated 4 months ago by Sbioinfo • 0
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Detailed process for building snpEff database for NCBI RefSeq genomes?
genome database snpeff written 5 months ago by fwuffy • 100
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176
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1
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How does SnpEff discriminate between transcripts?
vcf snpeff uniprot transcripts written 6 months ago by Maxime • 0
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338
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Tutorial: Human mitochondrial DNA annotation in SnpEff
annotation tutorial snpeff chrmt snp written 6 months ago by Arup Ghosh ♦ 2.7k
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snpEff killed while reading genome version
snpeff snp written 8 months ago by j.lunger18 • 10 • updated 7 months ago by Biostar ♦♦ 20
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1
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270
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Phasing and de novo finding from VCF file
vcf de novo snpeff written 7 months ago by Maxime • 0 • updated 7 months ago by Pierre Lindenbaum ♦ 133k
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Why snpEff annotates same region with different "effects" and why some effects are given in combination? What is the criteria to filter this annotation?
exome vcf snpeff vep variantannotation written 7 months ago by svp • 420
2
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214
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1
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SNP annotation using snpEFF
vcf annotation snpeff snp written 7 months ago by shrutidabral • 10 • updated 7 months ago by Pierre Lindenbaum ♦ 133k
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216
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Varscan2 somatic output annotation with snpEff -cancer option
annotation snpeff varscan2 variant sequencing written 8 months ago by jobrien • 0
2
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1
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395
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1
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SnpEff: How to match variants with line ID in 1001 Genomes Project?
snpeff snp sequencing written 19 months ago by chase.lewis • 40 • updated 8 months ago by brunotgaraupaula • 0
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325
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SNPEFF genome build with specific codon usage
annotation snpeff variants written 9 months ago by Stephane Plaisance • 440 • updated 8 months ago by Biostar ♦♦ 20
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173
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Getting reports (HTML/txt) for already annotated (SnpEff) vcf files and phasing/de novo findings
vcf snpeff written 8 months ago by Maxime • 0
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203
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Variant effect prediction
polyphen sift snpeff written 8 months ago by wrab425 • 20
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229
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Reference genome for snpEff
vcf assembly snpeff written 8 months ago by j.lunger18 • 10
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290
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understanding snpEff/snpSift concordance output
snpsift snpeff snp concordance written 8 months ago by rcappa • 0
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Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 6.0 years ago by Marina Manrique • 1.3k • updated 9 months ago by tsy19900929 • 0
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Fail to build a database in SNPeff
build_data_base snpeff written 9 months ago by r00628112 • 10 • updated 9 months ago by ATpoint ♦ 44k
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1
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Fatal error reading file snpEff.config with SnpEff
variant calling snpeff fatal error written 9 months ago by aguiller.mateos • 10
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1
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142
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1
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Running snpeff in cancer analysis mode
somatic vs germaline snpeff written 9 months ago by atheeth14 • 0 • updated 9 months ago by Kevin Blighe ♦ 69k
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478
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using snpEff with custom genome
annotation snpeff snp written 9 months ago by etay.rot • 10
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225
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snpEff and SIFT calculation
sift snpeff written 9 months ago by misterie • 90
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snpEff: Single variants are double-counted in Ts/Tv summary
ti/tv ratio snpeff ts/tv ratio written 9 months ago by kenyonalexander0 • 0
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