Showing: snpeffreset
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snpEff building new database ERROR
database snpeff new written 8 weeks ago by Anastasia A. 0 • updated 7 weeks ago by Vitis2.0k
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Annotate VCF on specific transcripts (ANN field)
vcf snpsift snpeff written 3 months ago by FGV100 • updated 3 months ago by Pierre Lindenbaum117k
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Why snpEff annotation give different names to one same gene?
mtdna snpeff written 3 months ago by MatthewP80 • updated 3 months ago by jared.andrews071.9k
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"count"in the snpEFF html output
snpeff written 4 months ago by lifang53890
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snpEff: wrong HGVS output?
hgvs snpeff written 6 months ago by Marvin130 • updated 5 months ago by WouterDeCoster37k
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how to extract gene name for LOF (loss of function) variants
snpeff lof variants written 7 months ago by reza210 • updated 7 months ago by Pierre Lindenbaum117k
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build databses for genome using snpEff
annotation snpeff snp written 7 months ago by StudentBio0 • updated 7 months ago by finswimmer11k
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more than one annotation at a locus in SnpEff output?
snpeff written 2.1 years ago by sun.nation120 • updated 7 months ago by jilguero88810
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Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 4.1 years ago by Marina Manrique1.3k • updated 7 months ago by sutturka120
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SNP difference between isolates
mycobacterium tuberculosis snpeff snp written 7 months ago by sanjay.bpkihs0 • updated 7 months ago by Medhat8.2k
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How to Get only one annotation with the SnpEff annotation?
annotation variation snpeff snp written 8 months ago by mhmtgenc8530 • updated 8 months ago by Pierre Lindenbaum117k
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Annotation with snpEFF
vcf annotation extractfields snpeff written 9 months ago by Nandini760 • updated 8 months ago by Biostar ♦♦ 20
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SNPEff not showing SNP
annotation forum snpeff variant snp written 10 months ago by sanjay.bpkihs0 • updated 9 months ago by cpad011211k
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I need help to create 2 SNPEFF databases (v1.01/v2.01) of Pinus taeda
snpeff written 9 months ago by nie shuai0 • updated 9 months ago by Biostar ♦♦ 20
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number of functions is more than namber of variants in snpEff's output
next-gen snpeff snp written 24 months ago by reza210 • updated 9 months ago by finswimmer11k
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snpEFF chr not found error bacterial genome
annotation snpeff snp written 4.2 years ago by SemiQuant50 • updated 10 months ago by sanjay.bpkihs0
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SnpSift doesn't show any VariantType for filtering
snpsift snpeff filtering mutations written 15 months ago by Vasu320 • updated 14 months ago by Biostar ♦♦ 20
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Mutation analysis on RNAseq
next-gen snpeff mutation rna-seq snp written 2.5 years ago by Ron880 • updated 15 months ago by QVINTVS_FABIVS_MAXIMVS2.2k
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