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SNPhylo does not obey number of autosome chromosomes

snphylo written 8 months ago by viniciushs.z • 10 • updated 8 months ago by arnstrm • 1.6k

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SNPhylo Error Help: there is no SNP and Na/NaN arguement

phylogenetic vcf snphylo tree written 14 months ago by N Smith • 0 • updated 13 months ago by Biostar ♦♦ 20

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Recent Replies

C: searching a method for analyzing Differential Expressed Genes instead of constr by lessismore • 270
I think you should elaborate more your question. What kind of data you have?
A: Differential expression gene list from TCGA level 3 RNASeq V2 datasets downloade by snoopy84 • 0
I have the same doubt here. What is the best method to calculate DE genes from RSEM data (TCGA)....
A: Download complete bacterial genomes and associated plasmid sequences from NCBI by alceal • 0
Did you get to automate it? Because I need to do the same. What I did is downloaded the CSV and l...
C: Ensembl protein counts by cdsouthan • 1.7k
Seeing as I may finally get round to revising https://www.ncbi.nlm.nih.gov/pubmed/28529709 I wou...
C: Install DESeq2 and edgeR with Anaconda by Jeremy Leipzig ♦ 17k
if you don't have sudo create an environment first conda create -n myawesomeenvironment pyth...
A: Install DESeq2 and edgeR with Anaconda by Linkrw12 • 0
Adding this for completeness sake: Sometimes Bioconductor packages will not be in the bioconda r...
C: denovo assembly of unmapped reads by ashish • 110
Thanks Macspider, I got it.
C: How to display a VCF/BCF file or stream as a paginated table in a python web fra by Jeremy Leipzig ♦ 17k
both of them (old xbrowse and varify) are not going to scale beyond a couple trios seqr is the n...
C: How to make variant calling run faster? by jared.andrews07 • 140
It's also a **lot** less accurate by many other benchmarks. I would not recommend samtools for va...
A: Error running smartpca from eigensoft by silvia.shuchang.liu • 0
Since example.evec should be an output from smartpca step, and its the input for evec2pca.perl st...
A: Estimating Insert Size From Paired End Data. by jmodlis • 0
I know this post is really old, but if anyone is still looking for the answer to this (like I was...
A: What is the actual cause of excessive zeroes in single cell RNA-seq data? Is it by george.ry • 1.0k
There's a variety of things at play here, but a few main things. Others can probably add some ex...

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