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Dendrogram on SNPs from VCF file?

snphylo fasttree snprelate written 6 months ago by popescuiofelia • 10 • updated 4 months ago by sankar2004 • 10

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SNPhylo does not obey number of autosome chromosomes

snphylo written 2.6 years ago by viniciushs.z • 20 • updated 13 months ago by nataliagru1 • 30

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SNPhylo Error Help: there is no SNP and Na/NaN arguement

phylogenetic vcf snphylo tree written 3.1 years ago by N Smith • 10 • updated 3.0 years ago by Biostar ♦♦ 20

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Recent Replies

C: How to create PSSM matrix by fishgolden • 400
"I have downloaded this as a pssm" It's ASN.1 format. I can't see needed format[1] yet.
C: GWAS: how do we know we have the most appropriate model? by LivelongandProsper • 10
Hi Kevin, I know this is an old thread but I will give it a shot asking a question here: What i...
C: Microarray Probes to Ensembl ID or Gene ID by Scott McKay • 10
Would I just download the annotation package and then run the same script as above and just swap ...
C: Microarray Probes to Ensembl ID or Gene ID by Kevin Blighe ♦ 48k
If Human, then the annotation package that you want is: https://www.bioconductor.org/packages/rel...
C: Microarray Probes to Ensembl ID or Gene ID by Scott McKay • 10
Its from the Affymetrix Clariom D Assay
C: New method for protein secondary structure prediction by Mensur Dlakic • 1.2k
The sequence from the example I used previously: >1ako_A MKFVSFNINGLRARPHQLEAIVEKHQPD...
C: How to run spades.py for multiple files(fastq) at once? by RamRS ♦ 24k
If an answer was helpful, you should upvote it; if the answer resolved your question, you should ...
C: RColorBrewer for annotations in ComplexHeatmap by RamRS ♦ 24k
You could pass in a vector of colors to the `col` parameter. See: https://jokergoo.github.io/Comp...
C: Sequence duplication levels in de-novo assemblies by yp19 • 50
The number of sequences did go down. The second sentence (%seqs remaining if deduplicated) is ref...
C: New method for protein secondary structure prediction by vytarasov • 60
Which protein is in your alignment example ? And, which prediction method is used there ? I would...
C: New method for protein secondary structure prediction by Mensur Dlakic • 1.2k
It is difficult to judge the quality of a predictive model based on few examples, but the example...
A: How to extract lncRNA from CPC2 output? by elsoja • 30
I'd suggest you not to use CPC2 because there are several better performing alternatives out ther...

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