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Dendrogram on SNPs from VCF file?

snphylo fasttree snprelate written 9 months ago by popescuiofelia • 10 • updated 7 months ago by sankar2004 • 10

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SNPhylo does not obey number of autosome chromosomes

snphylo written 2.9 years ago by viniciushs.z • 20 • updated 16 months ago by nataliagru1 • 30

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SNPhylo Error Help: there is no SNP and Na/NaN arguement

phylogenetic vcf snphylo tree written 3.3 years ago by N Smith • 10 • updated 3.2 years ago by Biostar ♦♦ 20

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Recent Replies

A: How to quantify novel microRNA read counts for each sample from miRDeep2 by zarskili • 0
One method would be to first identify all the known and novel microRNAs in all of your samples po...
C: functional enichment with custom gene annotation by zhang.jianhai • 0
They are defined according to their expression profiles measured by RNA-seq. I want to enrich mem...
C: functional enichment with custom gene annotation by zhang.jianhai • 0
Yes, my question is about enrichment in membership in some gold standard networks. I constructed ...
C: Bioinformatics vs. the Climate Crisis by chrchang523 ♦ 5.9k
While we don't have that much experience as a species with large-scale environmental pollution, w...
C: Well studied networks/pathways in rice by zhang.jianhai • 0
Hi Andres, I used rice RNA-seq data to build my own networks, and want to know how these networ...
C: where can I found ecab3.0 SNP annotation? by genomax ♦ 75k
Ensembl has the VCF files [for horse here][1]. [1]: ftp://ftp.ensembl.org/pub/release-98/vari...
C: Bioinformatics vs. the Climate Crisis by chrchang523 ♦ 5.9k
Basically the same thing can be said about the relation of space colonization to a number of grow...
C: PSMC: fq2psmc conversion problems by jcolella.jc • 0
I've tried gzipping my fq file and using '-q 0' instead of '-q20', but am still getting an empty ...
C: Bioinformatics vs. the Climate Crisis by Joe ♦ 15k
I think you're conflating a 'human' sense of urgency, i.e. is my house going to fall in to the se...
C: Bioinformatics vs. the Climate Crisis by Joe ♦ 15k
No one is demanding a blank cheque. People are demanding that goverments take the threat seriousl...
C: How to separate a big file into smaller ones using linux commands? by Pierre Lindenbaum ♦ 124k
https://www.howtoforge.com/linux-csplit-command/
C: How to separate a big file into smaller ones using linux commands? by akansha.gitanjali • 0
if you can explain what the different / mean that will be very helpful. I am new to linux.

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