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Automated Snp Lookup Based On Chr And Bp-Position
ncbi snps snp written 7.6 years ago by bdeonovic • 180 • updated 4 days ago by Biostar ♦♦ 20
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134
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How to convert ss to rsid (SNPs)
snps written 8 days ago by mendonca_thiago22 • 0 • updated 7 days ago by GenoMax ♦ 94k
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IMPUTE2: change names of specific SNPs
impute2 snps names written 3.3 years ago by m98 • 280 • updated 6 weeks ago by Biostar ♦♦ 20
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93
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Linking SNPs to their summary statistics - if any -
gwas snps statistics written 7 weeks ago by SGMS • 70
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LINK SNPS TO GENES USING BIOMART, KEEPING YOUR INITIAL POSITIONS IN THE RESULTING FILE
snps biomart genes mapping written 11 weeks ago by SGMS • 70 • updated 11 weeks ago by Emily_Ensembl ♦ 21k
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How to create alternate reference for SNPs?
snps reference written 11 weeks ago by Parham • 1.5k
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Quality check for illumina GSA data
illumina snps written 3.6 years ago by xinhui.wang • 290 • updated 12 weeks ago by brinderbuttar • 0
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GTEX - how to upload more than one rsIDs to get gene expression or eQTL information
rsids snps gtex written 2.3 years ago by SGMS • 70 • updated 3 months ago by optimistsso4co3 • 10
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Difference in imputation between platforms and RS names
rs minimac snps imputation mach written 4 months ago by anamaria • 140 • updated 4 months ago by Kevin Blighe ♦ 69k
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genotype imputation pipeline
gwas snps imputation written 4.5 years ago by alessandrotestori7 • 390 • updated 7 months ago by Kevin Blighe ♦ 69k
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194
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Understanding TCGA somatic mutation files
vcf tcga snps maf written 8 months ago by j.lunger18 • 10 • updated 8 months ago by Kevin Blighe ♦ 69k
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171
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gnomAD reports variants with "NA" allele count and allele frequency
vcf snps gnomad written 8 months ago by j.lunger18 • 10
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How does bcftools estimate the probability for genotype for VAF 0.75 for diploid?
snps bcftools genotype written 9 months ago by bxia • 150
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How to generate rainfall plots when using multiple different species assemblies
fasta snps visualization genomics written 10 months ago by Rubal • 330 • updated 10 months ago by bernatgel • 2.8k
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297
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SnpSift Annotate replace ID column
snpsift annotation snps snpeff written 11 months ago by Jimbou • 820 • updated 10 months ago by Nicholas Mancuso • 70
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8 follow
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1000Genomes population allele frequencies for list of SNPs
1000genomes snps written 2.1 years ago by biosol • 150 • updated 11 months ago by Biostar ♦♦ 20
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Heterozygous calls (SNPs) problem while working with inbred lines.
vcf snps gatk heterozygous sequencing errors written 12 months ago by rimgubaev • 190
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How to get the fine-mapped SNPs associated with risk loci
fine-mapped gwas snps breast cancer written 12 months ago by ben.kunfang • 30
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1
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460
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1
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Query genomic position based on rsID in BiomaRt
R biomart snps genomic position written 12 months ago by Yean • 130
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458
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How do I compute ld blocks from the hapmap ld_data?
snps ld written 13 months ago by endrebak • 840
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Calling Snps From Libraries
snps samtools snp bam written 7.9 years ago by yevishere • 0 • updated 13 months ago by Biostar ♦♦ 20
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8 follow
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How to treat heterozygous GATK calls on haploid chromosomes (sex chrom in males)
gatk snps haploid haplotype caller written 2.9 years ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 14 months ago by monicapenon • 10
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1.8k
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1
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Plot SNPs on GViz
R snps gviz written 4.0 years ago by Jack • 120 • updated 15 months ago by bernatgel • 2.8k
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Marker vs SNPs vs Biomarker
snps genotype written 5.0 years ago by MAPK • 1.7k
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414
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plot snps on chromosomes
snps plot written 15 months ago by waqaskhokhar999 • 100
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population genomics investigation using parsimony informative sites
snps genetics parsimony informative sites written 16 months ago by sayyarsehrish • 0
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5 follow
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Plink Raw Format To Ped Format
snps plink ped written 7.3 years ago by kapoor.manav • 40 • updated 16 months ago by klkeysb • 10
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5 follow
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Comparing the WG sequenced isolate against the other same genus isolates on the public database
wgs snps blast alignment bacteria written 17 months ago by bioinforesearchquestions • 280 • updated 17 months ago by bioguy • 50
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PLINK error locus has more than 2 alleles
gwas snps plink written 6.0 years ago by biogirl • 190 • updated 17 months ago by Runen • 10
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1
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379
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1
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calculate mutation burden per gene
snps mutations written 17 months ago by shubhrab • 0 • updated 17 months ago by Brice Sarver • 3.6k
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