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genotype imputation pipeline
gwas snps imputation written 4.0 years ago by alessandrotestori7390 • updated 5 weeks ago by Kevin Blighe61k
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Understanding TCGA somatic mutation files
vcf tcga snps maf written 9 weeks ago by j.lunger1810 • updated 9 weeks ago by Kevin Blighe61k
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SnpSift Annotate replace ID column
snpsift annotation snps snpeff written 5 months ago by Jimbou750 • updated 4 months ago by Nicholas Mancuso70
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1000Genomes population allele frequencies for list of SNPs
1000genomes snps written 19 months ago by sonia.olaechea130 • updated 5 months ago by Biostar ♦♦ 20
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Calling Snps From Libraries
snps samtools snp bam written 7.4 years ago by yevishere0 • updated 7 months ago by Biostar ♦♦ 20
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Plot SNPs on GViz
R snps gviz written 3.5 years ago by Jack120 • updated 8 months ago by bernatgel2.6k
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Marker vs SNPs vs Biomarker
snps genotype written 4.4 years ago by MAPK1.5k
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plot snps on chromosomes
snps plot written 9 months ago by waqaskhokhar99980
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Plink Raw Format To Ped Format
snps plink ped written 6.7 years ago by kapoor.manav40 • updated 10 months ago by klkeysb10
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PLINK error locus has more than 2 alleles
gwas snps plink written 5.4 years ago by biogirl190 • updated 11 months ago by Runen10
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calculate mutation burden per gene
snps mutations written 11 months ago by shubhrab0 • updated 11 months ago by Brice Sarver3.5k
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bayenv2: "initial epsilon zero or 1 locus 6912"
snps bayenv2 written 13 months ago by sonia.olaechea130 • updated 13 months ago by katuckele10
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Applying hard filters for variants
variant calling gatk snps variants written 4.7 years ago by bioinforesearchquestions280 • updated 13 months ago by Biostar ♦♦ 20
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Suggest vcf filtered parameter for gatk VariantFiltration
gatk4 snps written 13 months ago by Mbillah110 • updated 13 months ago by WouterDeCoster44k
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In which step should plink be used?
snps plink written 14 months ago by felipead6660 • updated 14 months ago by WouterDeCoster44k
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Lots of alleles in the same place?
alleles snps bcftools variants written 14 months ago by tbb2110 • updated 14 months ago by Kevin Blighe61k
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