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<prev • 230 results • page 1 of 8 • next >
3
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1
answer
2.6k
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1
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genotype imputation pipeline
gwas snps imputation written 4.0 years ago by alessandrotestori7 • 390 • updated 5 weeks ago by Kevin Blighe ♦ 61k
0
votes
1
answer
106
views
1
answer
Understanding TCGA somatic mutation files
vcf tcga snps maf written 9 weeks ago by j.lunger18 • 10 • updated 9 weeks ago by Kevin Blighe ♦ 61k
0
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0
answers
85
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0
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gnomAD reports variants with "NA" allele count and allele frequency
vcf snps gnomad written 9 weeks ago by j.lunger18 • 10
0
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0
answers
78
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0
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How does bcftools estimate the probability for genotype for VAF 0.75 for diploid?
snps bcftools genotype written 12 weeks ago by bxia • 150
3
votes
1
answer
220
views
1
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How to generate rainfall plots when using multiple different species assemblies
fasta snps visualization genomics written 4 months ago by Rubal • 310 • updated 4 months ago by bernatgel • 2.6k
2
votes
1
answer
149
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1
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SnpSift Annotate replace ID column
snpsift annotation snps snpeff written 5 months ago by Jimbou • 750 • updated 4 months ago by Nicholas Mancuso • 70
12
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2
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1.8k
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8 follow
2
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1000Genomes population allele frequencies for list of SNPs
1000genomes snps written 19 months ago by sonia.olaechea • 130 • updated 5 months ago by Biostar ♦♦ 20
0
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0
answers
148
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0
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Heterozygous calls (SNPs) problem while working with inbred lines.
vcf snps gatk heterozygous sequencing errors written 5 months ago by rimgubaev • 180
0
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0
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128
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0
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How to get the fine-mapped SNPs associated with risk loci
fine-mapped gwas snps breast cancer written 6 months ago by ben.kunfang • 10
3
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1
answer
235
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1
answer
Query genomic position based on rsID in BiomaRt
R biomart snps genomic position written 6 months ago by Yean • 120
6
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2
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262
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2
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How do I compute ld blocks from the hapmap ld_data?
snps ld written 7 months ago by endrebak • 830
1
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1
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1.3k
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1
answer
Calling Snps From Libraries
snps samtools snp bam written 7.4 years ago by yevishere • 0 • updated 7 months ago by Biostar ♦♦ 20
2
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1
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1.2k
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6 follow
1
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How to treat heterozygous GATK calls on haploid chromosomes (sex chrom in males)
gatk snps haploid haplotype caller written 2.4 years ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 8 months ago by monicapenon • 0
2
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1
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1.5k
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1
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Plot SNPs on GViz
R snps gviz written 3.5 years ago by Jack • 120 • updated 8 months ago by bernatgel • 2.6k
1
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1
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1.6k
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1
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Marker vs SNPs vs Biomarker
snps genotype written 4.4 years ago by MAPK • 1.5k
0
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0
answers
281
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0
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plot snps on chromosomes
snps plot written 9 months ago by waqaskhokhar999 • 80
0
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0
answers
246
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0
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population genomics investigation using parsimony informative sites
snps genetics parsimony informative sites written 9 months ago by sayyarsehrish • 0
7
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2
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6.1k
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5 follow
2
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Plink Raw Format To Ped Format
snps plink ped written 6.7 years ago by kapoor.manav • 40 • updated 10 months ago by klkeysb • 10
4
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1
answer
555
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5 follow
1
answer
Comparing the WG sequenced isolate against the other same genus isolates on the public database
wgs snps blast alignment bacteria written 11 months ago by bioinforesearchquestions • 280 • updated 10 months ago by bioguy • 50
3
votes
1
answer
5.0k
views
1
answer
PLINK error locus has more than 2 alleles
gwas snps plink written 5.4 years ago by biogirl • 190 • updated 11 months ago by Runen • 10
0
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1
answer
268
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1
answer
calculate mutation burden per gene
snps mutations written 11 months ago by shubhrab • 0 • updated 11 months ago by Brice Sarver • 3.5k
1
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0
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263
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0
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Placing SNPs within updated genome assembly
genome assembly snps blast vmatch written 11 months ago by pigsnstuff • 0
0
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0
answers
256
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0
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Nanopore data workflow for detecting variance
snps nanopolish oxford nanopore canu written 12 months ago by s.m.frampton • 10
2
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0
answers
322
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0
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How to make association studies using haplotype (LD) blocks instead of SNPs?
snps gwas haplotype ld written 12 months ago by rimgubaev • 180
1
vote
1
answer
360
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1
answer
bayenv2: "initial epsilon zero or 1 locus 6912"
snps bayenv2 written 13 months ago by sonia.olaechea • 130 • updated 13 months ago by katuckele • 10
0
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1
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5.6k
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1
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Applying hard filters for variants
variant calling gatk snps variants written 4.7 years ago by bioinforesearchquestions • 280 • updated 13 months ago by Biostar ♦♦ 20
0
votes
0
answers
659
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0
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Suggest vcf filtered parameter for gatk VariantFiltration
gatk4 snps written 13 months ago by Mbillah • 110 • updated 13 months ago by WouterDeCoster ♦ 44k
1
vote
1
answer
271
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1
answer
In which step should plink be used?
snps plink written 14 months ago by felipead66 • 60 • updated 14 months ago by WouterDeCoster ♦ 44k
0
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0
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313
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0
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Checking regions with high density of SNPs
snps high density written 14 months ago by misterie • 90
0
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1
answer
389
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1
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Lots of alleles in the same place?
alleles snps bcftools variants written 14 months ago by tbb21 • 10 • updated 14 months ago by Kevin Blighe ♦ 61k
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