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<prev • 193 results • page 1 of 7 • next >
8
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3
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20k
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9 follow
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Obtaining The Snp Rs Number With The Chromosomal Position
R bioconductor snps written 5.5 years ago by Sheila • 250 • updated 4 hours ago by hsiaoyi0504 • 30
10
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0
answers
601
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0
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Minor allele frequency
alleles gwas snps written 23 months ago by alessandrotestori7 • 310 • updated 5 days ago by Biostar ♦♦ 20
3
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3
answers
146
views
3
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How to download VCF of 1000 genome project with population frequencies?
vcf rsids snps 1000genome written 27 days ago by bioinforesearchquestions • 180 • updated 26 days ago by finswimmer ♦ 6.9k
5
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1
answer
151
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1
answer
GWAS in Plink - phenotype file format
gwas snps plink phenotype written 4 weeks ago by SGMS • 50 • updated 4 weeks ago by zx8754 ♦ 5.7k
0
votes
1
answer
115
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1
answer
Error: Snakemake skiped a rule
snakefile snps pipeline snakemake indels written 4 weeks ago by c.clarido • 40 • updated 4 weeks ago by rizoic • 90
0
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2
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157
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2
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Best practices for variant calling on multiple sequencing runs of the same sample
variant calling vcf snps written 5 weeks ago by Damian Kao ♦ 15k • updated 5 weeks ago by swbarnes2 ♦ 4.5k
0
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0
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107
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0
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GTEX - how to upload more than one rsIDs to get gene expression or eQTL information
rsids snps gtex written 6 weeks ago by SGMS • 50
1
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0
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153
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0
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Error: Line 2 of .ped file has more tokens than expected.
snps plink written 6 weeks ago by sonia.olaechea • 20 • updated 6 weeks ago by zx8754 ♦ 5.7k
5
votes
1
answer
449
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5 follow
1
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Need help with R script to edit x-axis of snp density plot
R snps density chromosome written 4 months ago by deepti1rao • 20 • updated 6 weeks ago by bernatgel • 1.3k
6
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1
answer
192
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5 follow
1
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Finding out if certain SNP positions fall into certain gene regions
gene region snps unix R written 7 weeks ago by SGMS • 50 • updated 7 weeks ago by Alex Reynolds ♦ 26k
1
vote
1
answer
174
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1
answer
Preference about IMPUTATION TOOL
snps imputation tool written 9 weeks ago by wonseok.cchoi • 0 • updated 8 weeks ago by thassia.carratto • 10
1
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1
answer
137
views
1
answer
Using one bam file with huge coverage, How to generate several bam files with different coverage
filter snps caller bam written 10 weeks ago by tarek.mohamed • 190 • updated 10 weeks ago by WouterDeCoster ♦ 34k
3
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2
answers
2.3k
views
2
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Identifying private and shared SNPs using VCFtools
snps vcftools written 2.4 years ago by outlier95 • 10 • updated 3 months ago by Jorge Amigo ♦ 11k
0
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0
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140
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0
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vcf v4.2 consequences of missense snps
vcf plant snps missense sift written 3 months ago by deepti1rao • 20
0
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1
answer
202
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1
answer
TCGA SNP data
maf2vcf snps paad tcga written 3 months ago by archie • 70 • updated 3 months ago by Kevin Blighe ♦ 32k
0
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0
answers
360
views
0
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 4 months ago by tarek.mohamed • 190
0
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0
answers
251
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0
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run plink with locus has more than 2 alleles
snps plink roh written 4 months ago by mary • 190
1
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0
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159
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0
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Classify benign tumor vs malign tumor
indels snps tumor written 4 months ago by roalva1 • 80
3
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1
answer
156
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1
answer
amino acid alteration position for SNPs using biomart
snps locations biomart aminoacids written 4 months ago by tarek.mohamed • 190 • updated 4 months ago by b.nota ♦ 5.3k
4
votes
2
answers
256
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2
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Find all rsid synonyms for a list of rsids
ensembl snps rsids written 4 months ago by Jab • 0 • updated 4 months ago by Mike Smith • 890
16
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3
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408
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6 follow
3
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Obtaining rsIDs using BiomaRt or linux
R biomart snps rsid bed written 4 months ago by camerond • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 114k
3
votes
0
answers
224
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0
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Benchmarking single SNP mapping
snps bowtie wgsim bwa mapping written 6 months ago by Josh Herr ♦ 5.6k • updated 6 months ago by Biostar ♦♦ 20
3
votes
1
answer
2.3k
views
1
answer
Somatic variants in exome normal/tumor data mostly in non-exonic regions. Is this a likely scenario?
snps next-gen mutect snp written 4.2 years ago by vchris_ngs • 4.5k • updated 6 months ago by Biostar ♦♦ 20
0
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0
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267
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0
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
news snps rna-seq training written 7 months ago by AABI • 100
3
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4
answers
1.4k
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4
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.fai file generation for a vcf file containing snps
.fai snps written 3.2 years ago by madhuri haque • 20 • updated 7 months ago by Biostar ♦♦ 20
5
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1
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1.9k
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1
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How to visualize large VCF files
vcf variant calling snps variant snp written 2.5 years ago by bioinforesearchquestions • 180 • updated 7 months ago by Biostar ♦♦ 20
0
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0
answers
279
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0
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Do I need to reconstruct haplotypes from SNP data to calculate nucleotide diversity?
haplotypes snps nucleotide diversity written 8 months ago by suzyhocking • 0
4
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0
answers
903
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0
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How I could get the MAF from a SNPs list?
maf snps written 12 months ago by vgenepi • 10
0
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0
answers
408
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0
answers
Linkage Disequilibrium calculation
snps ld written 8 months ago by alessandrotestori7 • 310
2
votes
1
answer
376
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1
answer
Understanding the VCF data from my variant calling
vcf variant calling snps igv indels written 9 months ago by jaqx008 • 40 • updated 9 months ago by jared.andrews07 • 1.5k
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