Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: snps • reset
or   Classic search
<prev • 176 results • page 1 of 6 • next >
3
votes
0
answers
91
views
0
answers
Benchmarking single SNP mapping
snps bowtie wgsim bwa mapping written 21 days ago by Josh Herr ♦ 5.5k • updated 9 days ago by Biostar ♦♦ 20
3
votes
1
answer
2.2k
views
1
answer
Somatic variants in exome normal/tumor data mostly in non-exonic regions. Is this a likely scenario?
snps next-gen mutect snp written 3.7 years ago by vchris_ngs • 4.5k • updated 11 days ago by Biostar ♦♦ 20
0
votes
0
answers
86
views
0
answers
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
news snps rna-seq training written 4 weeks ago by AABI • 90
3
votes
4
answers
1.2k
views
4
answers
.fai file generation for a vcf file containing snps
.fai snps written 2.7 years ago by madhuri haque • 20 • updated 5 weeks ago by Biostar ♦♦ 20
5
votes
1
answer
1.5k
views
1
answer
How to visualize large VCF files
vcf variant calling snps variant snp written 2.0 years ago by bioinforesearchquestions • 120 • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
130
views
0
answers
Do I need to reconstruct haplotypes from SNP data to calculate nucleotide diversity?
haplotypes snps nucleotide diversity written 11 weeks ago by suzyhocking • 0
4
votes
0
answers
431
views
0
answers
How I could get the MAF from a SNPs list?
maf snps written 6 months ago by vgenepi • 0
0
votes
0
answers
160
views
0
answers
Linkage Disequilibrium calculation
snps ld written 12 weeks ago by alessandrotestori7 • 290
2
votes
1
answer
224
views
1
answer
Understanding the VCF data from my variant calling
vcf variant calling snps igv indels written 3 months ago by jaqx008 • 30 • updated 3 months ago by jared.andrews07 • 680
1
vote
0
answers
234
views
0
answers
How to treat heterozygous GATK calls on haploid chromosomes (sex chrom in males)
gatk snps haploid haplotype caller written 3 months ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
4
votes
3
answers
9.5k
views
6 follow
3
answers
Plotting Linkage Disequilibrium Decay Across The Genome
snps plink ld plot written 4.6 years ago by Javier2013 • 110 • updated 3 months ago by hfang4 • 0
0
votes
0
answers
399
views
0
answers
Difficulty installing GATKtoolkit
variant calling gatk snps indels written 4 months ago by jaqx008 • 30
0
votes
1
answer
236
views
1
answer
GATK Variant calling
variant calling gatk snps written 4 months ago by jaqx008 • 30 • updated 4 months ago by finswimmer • 2.0k
0
votes
0
answers
195
views
0
answers
How to tackle homeologous region which calling SNP for Allotetraploid genome
snps allotetraploid written 4 months ago by Kritika • 250
0
votes
0
answers
250
views
0
answers
How can I get other parameters from Ensembl VEP for vcf annotation
snps variant type written 4 months ago by mittu1602 • 140
0
votes
0
answers
268
views
0
answers
The input of pathway analysis based on GWAS
pathway gwas snps written 4 months ago by magicpants • 20
4
votes
0
answers
238
views
0
answers
perl script not giving output
perl snps written 5 months ago by bioinfo355 • 0 • updated 5 months ago by Philipp Bayer ♦ 5.4k
1
vote
1
answer
563
views
1
answer
linkage disequilibrium analysis
different chromosomes snps ld written 6 months ago by tarek.mohamed • 130 • updated 6 months ago by Kevin Blighe ♦ 19k
1
vote
0
answers
475
views
0
answers
Looking-up SNPs within 16SrRNA from BED/bim/fam files
fam bed snps genotype plink written 6 months ago by F • 3.0k
3
votes
0
answers
453
views
6 follow
0
answers
Extract SNPs and SNP ID's from vcf file
1000genomes vcf file snps extract written 6 months ago by aadhirareddy1323 • 10
1
vote
2
answers
425
views
2
answers
vcf file filter
vcf filter snps minor allele homozygotes written 6 months ago by DataFanatic • 80 • updated 6 months ago by Pierre Lindenbaum ♦ 107k
2
votes
1
answer
426
views
1
answer
how to find snps within 1Kb from the gene
gene snps written 7 months ago by mms140130 • 50 • updated 7 months ago by Alex Reynolds ♦ 23k
0
votes
0
answers
307
views
0
answers
IMPUTE2: change names of specific SNPs
impute2 snps names written 7 months ago by m93 • 20
2
votes
1
answer
563
views
1
answer
Align two microbial genomes -- is mummer still the way to go?
vcf genome alignment mummer snps nucmer written 9 months ago by Lina F • 120
0
votes
1
answer
715
views
1
answer
How to filter out variants based on the population frequency
dnaseq snps variants allele-frequency written 21 months ago by bioinforesearchquestions • 120 • updated 9 months ago by shahimahdi57 • 0
3
votes
3
answers
3.6k
views
5 follow
3
answers
Remove columns and rows which have only NAs without deleting all the data
R missing data snps correlation written 9 months ago by ElenaL • 0 • updated 9 months ago by theobroma22 • 1.1k
0
votes
0
answers
389
views
0
answers
Quality check for illumina GSA data
illumina snps written 11 months ago by xinhui.wang • 120 • updated 10 months ago by Biostar ♦♦ 20
0
votes
0
answers
463
views
0
answers
x-axis is not displaying all my scaffolds in qqman r package
r package R snps qqman manhattan plot written 10 months ago by ggman • 40
1
vote
1
answer
764
views
1
answer
Cannot merge BCF files with `bcftools` files because "Index required, expected .vcf.gz or .bcf file" ?
vcf merge snps bcf index written 12 months ago by jespinoz • 20 • updated 11 months ago by Biostar ♦♦ 20
0
votes
0
answers
377
views
0
answers
Is there any tool to extract LD SNPs based on any other databases (except 1K database)?
ld snps 1000genome mutations written 11 months ago by bioinforesearchquestions • 120
<prev • 176 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • India, 1 minute ago
  • Taiwan, 2 minutes ago
  • Belgium, 3 minutes ago
  • Denmark, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1059 users visited in the last hour