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<prev • 217 results • page 1 of 8 • next >
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Placing SNPs within updated genome assembly
genome assembly snps blast vmatch written 5 hours ago by pigsnstuff • 0
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70
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Nanopore data workflow for detecting variance
snps nanopolish oxford nanopore canu written 19 days ago by s.m.frampton • 10
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94
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How to make association studies using haplotype (LD) blocks instead of SNPs?
snps gwas haplotype ld written 27 days ago by rimgubaev • 120
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1
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bayenv2: "initial epsilon zero or 1 locus 6912"
snps bayenv2 written 6 weeks ago by sonia.olaechea • 90 • updated 6 weeks ago by katuckele • 10
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Applying hard filters for variants
variant calling gatk snps variants written 3.7 years ago by bioinforesearchquestions • 240 • updated 7 weeks ago by Biostar ♦♦ 20
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Suggest vcf filtered parameter for gatk VariantFiltration
gatk4 snps written 8 weeks ago by Mbillah • 110 • updated 8 weeks ago by WouterDeCoster ♦ 40k
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In which step should plink be used?
snps plink written 9 weeks ago by felipead66 • 30 • updated 9 weeks ago by WouterDeCoster ♦ 40k
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Checking regions with high density of SNPs
snps high density written 10 weeks ago by bwczech • 70
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1
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152
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Lots of alleles in the same place?
alleles snps bcftools variants written 10 weeks ago by tbb21 • 10 • updated 10 weeks ago by Kevin Blighe ♦ 46k
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201
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Merge two files depending on multiple matching columns
annotation snps written 3 months ago by iya837 • 0
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210
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1
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Summary from a vcf file
vcf snps written 3 months ago by felipead66 • 30 • updated 3 months ago by arup • 1.5k
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144
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minimum snp number from set in LD
snps ld minimum snp number written 3 months ago by RNAseqer • 110 • updated 3 months ago by MatthewP • 190
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1
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194
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1
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pulling snps from vcf file using ids
vcf snps ids written 3 months ago by RNAseqer • 110 • updated 3 months ago by Kevin Blighe ♦ 46k
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129
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Error in snphylo
snplylo snps written 3 months ago by felipead66 • 30 • updated 3 months ago by zx8754 ♦ 7.8k
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query and export SNPs information from ensembl
maf ensembl snps written 3 months ago by landivincenzo • 0 • updated 3 months ago by Ben_Ensembl • 1.0k
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355
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SNps and calculation of sample size
snps written 4 months ago by efsvdo • 0 • updated 4 months ago by pltbiotech_tkarthi • 170
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213
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From mpileup on bam files to TMB calculation, how is it done?
snps bam mutations mpileup tmb written 5 months ago by Pin.Bioinf • 250
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429
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Difference between Private SNPs and Singleton SNPs
variant calling gatk snps snp population genetics written 5 months ago by prasundutta87 • 330
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VariantCalling with single sanger read
indel snps variantcalling blast written 2.9 years ago by Amirosein • 70 • updated 5 months ago by trausch • 1.3k
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242
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Change ALT field in VCF
vcf gwas snps written 5 months ago by sonia.olaechea • 90
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How to calculate the fraction of bases that are different from the reference base using samtools mpileup ?
samtools mpileup snps reference base fractions written 7 months ago by M.O.L.S • 10
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PLINK assoc input: can it be two vcf files case/control?
vcf snps association plink written 6 months ago by Pin.Bioinf • 250 • updated 6 months ago by Kevin Blighe ♦ 46k
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229
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Ensembl Biomart Allele Frequency for different ethnicity
maf allele frequency snps ensembl biomart written 7 months ago by iside • 10
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237
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Identifying consensus sequence between multiple Arabidopsis genome sequences
consensus alignment snps variations plant written 7 months ago by bioinforesearchquestions • 240
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6 follow
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Extract SNPs and SNP ID's from vcf file
vcf 1000genomes snps extract written 21 months ago by aadhirareddy1323 • 20 • updated 7 months ago by zx8754 ♦ 7.8k
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GATK DP filter for multiple samples
gatk snps written 3.0 years ago by sun.nation • 120 • updated 7 months ago by Flávia Rogério • 0
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730
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7 follow
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1000Genomes population allele frequencies for list of SNPs
1000genomes snps written 7 months ago by sonia.olaechea • 90 • updated 7 months ago by Pierre Lindenbaum ♦ 121k
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8 follow
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Remove columns and rows which have only NAs without deleting all the data
R missing data snps correlation written 24 months ago by ElenaL • 0 • updated 7 months ago by slegotsky • 0
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Hardy-Weinbergy Equilibrium and SNPs
snps hardy-weinberg minor allelic frequency written 3.7 years ago by waynestatetutor • 0 • updated 7 months ago by Biostar ♦♦ 20
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 12 months ago by tarek.mohamed • 250 • updated 8 months ago by WouterDeCoster ♦ 40k
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