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<prev • 226 results • page 1 of 8 • next >
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SnpSift Annotate replace ID column
snpsift annotation snps snpeff written 9 days ago by Jimbou • 700
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2
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8 follow
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1000Genomes population allele frequencies for list of SNPs
1000genomes snps written 14 months ago by sonia.olaechea • 100 • updated 24 days ago by Biostar ♦♦ 20
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Heterozygous calls (SNPs) problem while working with inbred lines.
vcf snps gatk heterozygous sequencing errors written 5 weeks ago by rimgubaev • 180
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How to get the fine-mapped SNPs associated with risk loci
fine-mapped gwas snps breast cancer written 6 weeks ago by ben.kunfang • 10
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130
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Query genomic position based on rsID in BiomaRt
R biomart snps genomic position written 7 weeks ago by Yean • 10
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118
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How do I compute ld blocks from the hapmap ld_data?
snps ld written 11 weeks ago by endrebak • 810
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Calling Snps From Libraries
snps samtools snp bam written 7.0 years ago by yevishere • 0 • updated 12 weeks ago by Biostar ♦♦ 20
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6 follow
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How to treat heterozygous GATK calls on haploid chromosomes (sex chrom in males)
gatk snps haploid haplotype caller written 2.0 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 3 months ago by monicapenon • 0
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Plot SNPs on GViz
R snps gviz written 3.1 years ago by Jack • 120 • updated 4 months ago by bernatgel • 2.4k
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Marker vs SNPs vs Biomarker
snps genotype written 4.0 years ago by MAPK • 1.5k
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198
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plot snps on chromosomes
snps plot written 4 months ago by waqaskhokhar999 • 80
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188
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population genomics investigation using parsimony informative sites
snps genetics parsimony informative sites written 4 months ago by sayyarsehrish • 0
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5 follow
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Plink Raw Format To Ped Format
snps plink ped written 6.4 years ago by kapoor.manav • 40 • updated 5 months ago by klkeysb • 10
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5 follow
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Comparing the WG sequenced isolate against the other same genus isolates on the public database
wgs snps blast alignment bacteria written 6 months ago by bioinforesearchquestions • 270 • updated 6 months ago by bioguy • 40
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PLINK error locus has more than 2 alleles
gwas snps plink written 5.0 years ago by biogirl • 190 • updated 6 months ago by Runen • 10
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1
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199
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1
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calculate mutation burden per gene
snps mutations written 6 months ago by shubhrab • 0 • updated 6 months ago by Brice Sarver • 3.5k
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197
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Placing SNPs within updated genome assembly
genome assembly snps blast vmatch written 7 months ago by pigsnstuff • 0
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190
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Nanopore data workflow for detecting variance
snps nanopolish oxford nanopore canu written 7 months ago by s.m.frampton • 10
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How to make association studies using haplotype (LD) blocks instead of SNPs?
snps gwas haplotype ld written 7 months ago by rimgubaev • 180
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238
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1
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bayenv2: "initial epsilon zero or 1 locus 6912"
snps bayenv2 written 8 months ago by sonia.olaechea • 100 • updated 8 months ago by katuckele • 10
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Applying hard filters for variants
variant calling gatk snps variants written 4.3 years ago by bioinforesearchquestions • 270 • updated 8 months ago by Biostar ♦♦ 20
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Suggest vcf filtered parameter for gatk VariantFiltration
gatk4 snps written 8 months ago by Mbillah • 110 • updated 8 months ago by WouterDeCoster ♦ 43k
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1
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228
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In which step should plink be used?
snps plink written 9 months ago by felipead66 • 50 • updated 9 months ago by WouterDeCoster ♦ 43k
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258
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Checking regions with high density of SNPs
snps high density written 9 months ago by misterie • 90
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314
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1
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Lots of alleles in the same place?
alleles snps bcftools variants written 9 months ago by tbb21 • 10 • updated 9 months ago by Kevin Blighe ♦ 54k
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Merge two files depending on multiple matching columns
annotation snps written 10 months ago by iya837 • 0
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Summary from a vcf file
vcf snps written 10 months ago by felipead66 • 50 • updated 10 months ago by Arup Ghosh ♦ 2.1k
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272
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minimum snp number from set in LD
snps ld minimum snp number written 10 months ago by RNAseqer • 130 • updated 10 months ago by MatthewP • 390
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1
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470
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pulling snps from vcf file using ids
vcf snps ids written 10 months ago by RNAseqer • 130 • updated 10 months ago by Kevin Blighe ♦ 54k
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Error in snphylo
snplylo snps written 10 months ago by felipead66 • 50 • updated 10 months ago by zx8754 ♦ 9.0k
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