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<prev • 186 results • page 1 of 7 • next >
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Preference about IMPUTATION TOOL
snps imputation tool written 8 days ago by wonseok.cchoi • 0 • updated 20 hours ago by thassia.carratto • 10
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98
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Using one bam file with huge coverage, How to generate several bam files with different coverage
filter snps caller bam written 17 days ago by tarek.mohamed • 180 • updated 17 days ago by WouterDeCoster ♦ 32k
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Identifying private and shared SNPs using VCFtools
snps vcftools written 2.3 years ago by outlier95 • 10 • updated 6 weeks ago by Jorge Amigo ♦ 11k
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98
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vcf v4.2 consequences of missense snps
vcf plant snps missense sift written 6 weeks ago by deepti1rao • 0
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Need help with R script to edit x-axis of snp density plot
snps density chromosome written 8 weeks ago by deepti1rao • 0 • updated 6 weeks ago by Ram ♦ 17k
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TCGA SNP data
maf2vcf snps paad tcga written 7 weeks ago by archie • 60 • updated 7 weeks ago by Kevin Blighe ♦ 28k
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215
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 8 weeks ago by tarek.mohamed • 180
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152
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run plink with locus has more than 2 alleles
snps plink roh written 9 weeks ago by mary • 190
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121
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Classify benign tumor vs malign tumor
indels snps tumor written 11 weeks ago by roalva1 • 80
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amino acid alteration position for SNPs using biomart
snps locations biomart aminoacids written 12 weeks ago by tarek.mohamed • 180 • updated 12 weeks ago by b.nota ♦ 4.9k
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217
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Find all rsid synonyms for a list of rsids
ensembl snps rsids written 12 weeks ago by Jab • 0 • updated 12 weeks ago by Mike Smith • 850
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3
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293
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6 follow
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Obtaining rsIDs using BiomaRt or linux
R biomart snps rsid bed written 12 weeks ago by camerond • 10 • updated 12 weeks ago by Pierre Lindenbaum ♦ 112k
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Benchmarking single SNP mapping
snps bowtie wgsim bwa mapping written 4 months ago by Josh Herr ♦ 5.6k • updated 4 months ago by Biostar ♦♦ 20
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Somatic variants in exome normal/tumor data mostly in non-exonic regions. Is this a likely scenario?
snps next-gen mutect snp written 4.1 years ago by vchris_ngs • 4.5k • updated 4 months ago by Biostar ♦♦ 20
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
news snps rna-seq training written 5 months ago by AABI • 100
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.fai file generation for a vcf file containing snps
.fai snps written 3.0 years ago by madhuri haque • 20 • updated 5 months ago by Biostar ♦♦ 20
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How to visualize large VCF files
vcf variant calling snps variant snp written 2.3 years ago by bioinforesearchquestions • 160 • updated 5 months ago by Biostar ♦♦ 20
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Do I need to reconstruct haplotypes from SNP data to calculate nucleotide diversity?
haplotypes snps nucleotide diversity written 6 months ago by suzyhocking • 0
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How I could get the MAF from a SNPs list?
maf snps written 10 months ago by vgenepi • 10
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Linkage Disequilibrium calculation
snps ld written 7 months ago by alessandrotestori7 • 300
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Understanding the VCF data from my variant calling
vcf variant calling snps igv indels written 7 months ago by jaqx008 • 30 • updated 7 months ago by jared.andrews07 • 1.3k
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How to treat heterozygous GATK calls on haploid chromosomes (sex chrom in males)
gatk snps haploid haplotype caller written 7 months ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
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6 follow
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Plotting Linkage Disequilibrium Decay Across The Genome
snps plink ld plot written 4.9 years ago by Javier2013 • 110 • updated 7 months ago by hfang4 • 0
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Difficulty installing GATKtoolkit
variant calling gatk snps indels written 8 months ago by jaqx008 • 30
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GATK Variant calling
variant calling gatk snps written 8 months ago by jaqx008 • 30 • updated 8 months ago by finswimmer ♦ 5.3k
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How to tackle homeologous region which calling SNP for Allotetraploid genome
snps allotetraploid written 8 months ago by Kritika • 250
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How can I get other parameters from Ensembl VEP for vcf annotation
snps variant type written 8 months ago by mittu1602 • 150
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perl script not giving output
perl snps written 9 months ago by bioinfo355 • 0 • updated 9 months ago by Philipp Bayer ♦ 5.6k
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linkage disequilibrium analysis
different chromosomes snps ld written 10 months ago by tarek.mohamed • 180 • updated 10 months ago by Kevin Blighe ♦ 28k
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Looking-up SNPs within 16SrRNA from BED/bim/fam files
fam bed snps genotype plink written 10 months ago by F • 3.1k
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