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Lucas Souza • 40
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Jeremy Leipzig ♦ 17k
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written 5.5 years ago by
Wayne • 910
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Petr Ponomarenko • 2.4k
Recent Votes
- C: RNA Seq data network analysis
- A: Run Samtools on multiple files
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- A: Run Samtools on multiple files
- C: Run Samtools on multiple files
- C: FASTQ- Reverse reads of paired end sequence worse than forward reads
- A: Run Samtools on multiple files
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Recent Replies
-
C: spliting sdf file by
genomax ♦ 29k
Check [this toolkit out][1]. Otherwise use the suggestion [in this thread][2] to convert to PDB f...
-
C: Extension of reads by
genomax ♦ 29k
How do i also extend with high quality score? Why are you so interested in getting **high** ...
-
C: FASTQ- Reverse reads of paired end sequence worse than forward reads by
genomax ♦ 29k
See Illumina tech support's answer quoted by @Paul [in this thread][1]. Scores as high as 45 are ...
-
C: FASTQ- Reverse reads of paired end sequence worse than forward reads by
genomax ♦ 29k
To get the original illumina read ID's try `fastq-dump` with `-F` option.
-
C: spliting sdf file by
WouterDeCoster ♦ 19k
It would be definitely helpful if you show a snippet of how your file looks like - you can't expe...
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A: Run Samtools on multiple files by
WouterDeCoster ♦ 19k
Using gnu parallel in its simplest form: ls *.bam | parallel -j 8 'samtools sort -@ 7 {} &g...
-
C: Run Samtools on multiple files by
Vijay Lakhujani • 930
On a separate note, this is really cool, suggestions to learn how to use "make" (tutorial links) ...
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C: Run Samtools on multiple files by
Vijay Lakhujani • 930
May be I am asking silly question, does that "16" means the no. of threads?
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C: Run Samtools on multiple files by
Vijay Lakhujani • 930
+1 Thanks venu for the suggestion, though I am clueless why the loop I suggested does not work fo...
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C: FASTQ- Reverse reads of paired end sequence worse than forward reads by
dilawerkh4 • 0
Hi Brian, These are the 1st few lines from the fastq generated with fastq-dump from SRA. What do...
-
A: Run Samtools on multiple files by
Pierre Lindenbaum ♦ 95k
create the following '**Makefile**' SHELL=/bin/bash BAMS=$(shell ls -1 *.bam) define...
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C: Run Samtools on multiple files by
venu • 3.9k
Just a comment, when you are defining output filename, it's always better to use `basename` in or...
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