Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 89 results • page 1 of 3 • next >
0
votes
0
answers
28
views
0
answers
GATK Mutect2 tumor-segmentation table
gatk mutect2 somatic written 1 day ago by cocchi.e89 • 80
2
votes
1
answer
77
views
1
answer
How can I call both somatic and germline variants from bam file?
exome variant calling ngs somatic germline written 23 days ago by svp • 100 • updated 23 days ago by godth13teen • 40
0
votes
0
answers
112
views
0
answers
Mutect2 somatic hemizygote variant on chrX
gatk mutect2 chromosome-x hemizygosis somatic written 8 weeks ago by cocchi.e89 • 80
0
votes
0
answers
82
views
0
answers
FreeBayes and mosaic variants
somatic snv written 12 weeks ago by German.M.Demidov • 1.8k
3
votes
1
answer
131
views
5 follow
1
answer
Structural variation germline vs somatic ?
somatic structural variation germline written 4 months ago by Picasa • 540 • updated 4 months ago by metinyazar88 • 10
0
votes
1
answer
324
views
1
answer
How to calculate TMB for somatic data TCGA
somatic tmb tcga sequencing written 4 months ago by Defne • 0 • updated 4 months ago by Kevin Blighe ♦ 63k
0
votes
0
answers
344
views
0
answers
Mutect2 filter somatic mutations as clustered_events
somatic mutect2 filtermutectcalls gatk written 4 months ago by Defne • 0
0
votes
0
answers
132
views
0
answers
Why are BED files necessary for somatic calling?
somatic written 4 months ago by vctrm67 • 10
0
votes
1
answer
130
views
1
answer
looking somatic variants interpreter, AS CKB database
somatic ckb interpreter written 6 months ago by J.F.Jiang • 830 • updated 5 months ago by Kevin Blighe ♦ 63k
0
votes
2
answers
188
views
2
answers
Somatic Variant Annotation and Interpretation
annotation somatic written 6 months ago by mirzanahal • 0 • updated 6 months ago by Collin • 840
0
votes
0
answers
285
views
0
answers
How rare are somatic mutations?
varscan tumor mutect snp somatic written 9 months ago by syntax • 60
2
votes
0
answers
304
views
0
answers
Need recommendations of RNA-Seq somatic variant calling pipeline
somatic variant rna-seq written 10 months ago by Zhenyu Zhang • 270
0
votes
1
answer
268
views
1
answer
Query regarding somatic variant calling
somatic snp written 11 months ago by iti.gupta • 10
0
votes
0
answers
249
views
0
answers
Testing data for GATK4.1.2.0 Mutect2 creating Panel of Normals
somatic pon panel of normals snp mutect2 written 11 months ago by Fish • 0
2
votes
1
answer
752
views
1
answer
Why there is a 50% variant allele frequency in TCGA NSCLC data?
somatic tcga vaf snv variant alle frequency written 17 months ago by sm.hashemin • 90
4
votes
1
answer
3.7k
views
6 follow
1
answer
tumor only variant calling tools
somatic ngs tumor mutation written 2.9 years ago by Zhenyu Zhang • 270 • updated 13 months ago by mariafirulevabio • 40
5
votes
1
answer
2.4k
views
1
answer
Somatic indel calling with Pindel
indels pindel somatic written 5.1 years ago by sichan • 90 • updated 14 months ago by Kevin Blighe ♦ 63k
3
votes
0
answers
2.6k
views
0
answers
Reducing False Positive Indel Calls From Pindel
indel somatic variant pindel written 8.7 years ago by Rlong • 340 • updated 15 months ago by isaacpei • 0
6
votes
1
answer
2.0k
views
1
answer
Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 3.8 years ago by Jerome Lin • 20 • updated 16 months ago by Biostar ♦♦ 20
0
votes
0
answers
316
views
0
answers
Mutect v1 doesnt finds second alternative allele
gatk next-gen mutect somatic written 17 months ago by guffrann • 0
5
votes
0
answers
1.9k
views
0
answers
Tool: cnv_facets: somatic Copy Number Variant calling using the facets package
tool cancer somatic command line facets cnv written 20 months ago by dariober ♦ 11k
3
votes
1
answer
1.2k
views
1
answer
Somatic variant caller
variant calling somatic next-gen written 3.4 years ago by CY • 510 • updated 20 months ago by Biostar ♦♦ 20
3
votes
1
answer
974
views
1
answer
Extract somatic mutations and germline mutations from variant calling files?
somatic cancer mutation germline variants written 24 months ago by ginnyli056 • 0 • updated 24 months ago by Emily_Ensembl ♦ 21k
2
votes
0
answers
700
views
0
answers
Finding NEW Somatic Cancer Mutation Databases
somatic database cancer mutation data written 2.1 years ago by c7750 • 0 • updated 2.1 years ago by Biostar ♦♦ 20
1
vote
0
answers
971
views
0
answers
Varscan fpfilter error
varscan snp fpfilter bam-readcount somatic written 2.1 years ago by a01039012387 • 10 • updated 2.1 years ago by RamRS ♦ 28k
1
vote
0
answers
892
views
0
answers
Varscan somatic caller - Genotype calls
varscan somatic written 2.2 years ago by hsbinf • 20
0
votes
0
answers
806
views
0
answers
The different results for the same tumor sample between VarScan2 somatic and mpileup2snp
mpileup2snp somatic varscan2 written 2.3 years ago by rayliu0115 • 0
14
votes
2
answers
4.1k
views
11 follow
2
answers
Somatic vs Germline Variant Calling
variant calling somatic sequencing germline written 2.4 years ago by checkyodna • 20 • updated 2.4 years ago by RamRS ♦ 28k
2
votes
0
answers
994
views
0
answers
call somatic CNV from cfDNA with normal control
cfdna somatic cnv written 2.4 years ago by CY • 510
1
vote
1
answer
751
views
1
answer
varscan2 somatic sip
somatic varscan2 snp written 2.5 years ago by fabbri.marco • 0
<prev • 89 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • UCLA, 11 minutes ago
  • US, Chicago, 16 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 697 users visited in the last hour