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<prev • 92 results • page 1 of 4 • next >
8
votes
6
answers
4.4k
views
6
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single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 4.2 years ago by Zhenyu Zhang • 270 • updated 9 days ago by Emad • 0
0
votes
0
answers
75
views
0
answers
GATK somatic CNV results
gatk cnv somatic written 12 days ago by cocchi.e89 • 110
0
votes
1
answer
202
views
1
answer
RNA Seq and Somatic Calls for the Cancer data
somatic tumor rna-seq written 10 weeks ago by always_learning • 1.1k • updated 9 weeks ago by Kevin Blighe ♦ 66k
0
votes
1
answer
132
views
1
answer
Does HaploypeCaller detects somatic mutations also?
haplotypecaller exome mutation somatic germline written 10 weeks ago by svp • 240 • updated 10 weeks ago by WouterDeCoster ♦ 44k
1
vote
0
answers
156
views
0
answers
GATK Mutect2 tumor-segmentation table
gatk mutect2 somatic written 11 weeks ago by cocchi.e89 • 110
5
votes
1
answer
165
views
1
answer
How can I call both somatic and germline variants from bam file?
exome variant calling ngs somatic germline written 3 months ago by svp • 240 • updated 3 months ago by godth13teen • 50
0
votes
0
answers
161
views
0
answers
Mutect2 somatic hemizygote variant on chrX
gatk mutect2 chromosome-x hemizygosis somatic written 4 months ago by cocchi.e89 • 110
0
votes
0
answers
117
views
0
answers
FreeBayes and mosaic variants
somatic snv written 5 months ago by German.M.Demidov • 1.8k
3
votes
1
answer
165
views
5 follow
1
answer
Structural variation germline vs somatic ?
somatic structural variation germline written 6 months ago by Picasa • 560 • updated 6 months ago by metinyazar88 • 10
0
votes
1
answer
458
views
1
answer
How to calculate TMB for somatic data TCGA
somatic tmb tcga sequencing written 6 months ago by Defne • 0 • updated 6 months ago by Kevin Blighe ♦ 66k
0
votes
0
answers
524
views
0
answers
Mutect2 filter somatic mutations as clustered_events
somatic mutect2 filtermutectcalls gatk written 7 months ago by Defne • 0
0
votes
0
answers
157
views
0
answers
Why are BED files necessary for somatic calling?
somatic written 7 months ago by vctrm67 • 20
0
votes
1
answer
156
views
1
answer
looking somatic variants interpreter, AS CKB database
somatic ckb interpreter written 9 months ago by J.F.Jiang • 850 • updated 7 months ago by Kevin Blighe ♦ 66k
0
votes
2
answers
228
views
2
answers
Somatic Variant Annotation and Interpretation
annotation somatic written 9 months ago by mirzanahal • 0 • updated 9 months ago by Collin • 850
0
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0
answers
320
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0
answers
How rare are somatic mutations?
varscan tumor mutect snp somatic written 12 months ago by syntax • 60
2
votes
0
answers
334
views
0
answers
Need recommendations of RNA-Seq somatic variant calling pipeline
somatic variant rna-seq written 12 months ago by Zhenyu Zhang • 270
0
votes
1
answer
294
views
1
answer
Query regarding somatic variant calling
somatic snp written 14 months ago by iti.gupta • 10
0
votes
0
answers
282
views
0
answers
Testing data for GATK4.1.2.0 Mutect2 creating Panel of Normals
somatic pon panel of normals snp mutect2 written 14 months ago by Fish • 0
2
votes
1
answer
885
views
1
answer
Why there is a 50% variant allele frequency in TCGA NSCLC data?
somatic tcga vaf snv variant alle frequency written 19 months ago by sm.hashemin • 90
4
votes
1
answer
3.9k
views
6 follow
1
answer
tumor only variant calling tools
somatic ngs tumor mutation written 3.2 years ago by Zhenyu Zhang • 270 • updated 16 months ago by mariafirulevabio • 40
5
votes
1
answer
2.5k
views
1
answer
Somatic indel calling with Pindel
indels pindel somatic written 5.3 years ago by sichan • 90 • updated 16 months ago by Kevin Blighe ♦ 66k
3
votes
0
answers
2.6k
views
0
answers
Reducing False Positive Indel Calls From Pindel
indel somatic variant pindel written 8.9 years ago by Rlong • 340 • updated 17 months ago by isaacpei • 0
6
votes
1
answer
2.0k
views
1
answer
Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 4.0 years ago by Jerome Lin • 20 • updated 19 months ago by Biostar ♦♦ 20
0
votes
0
answers
343
views
0
answers
Mutect v1 doesnt finds second alternative allele
gatk next-gen mutect somatic written 20 months ago by guffrann • 0
5
votes
0
answers
2.1k
views
0
answers
Tool: cnv_facets: somatic Copy Number Variant calling using the facets package
tool cancer somatic command line facets cnv written 22 months ago by dariober ♦ 11k
3
votes
1
answer
1.3k
views
1
answer
Somatic variant caller
variant calling somatic next-gen written 3.6 years ago by CY • 550 • updated 22 months ago by Biostar ♦♦ 20
3
votes
1
answer
1.0k
views
1
answer
Extract somatic mutations and germline mutations from variant calling files?
somatic cancer mutation germline variants written 2.2 years ago by ginnyli056 • 0 • updated 2.2 years ago by Emily_Ensembl ♦ 21k
2
votes
0
answers
731
views
0
answers
Finding NEW Somatic Cancer Mutation Databases
somatic database cancer mutation data written 2.3 years ago by c7750 • 0 • updated 2.3 years ago by Biostar ♦♦ 20
1
vote
0
answers
1.0k
views
0
answers
Varscan fpfilter error
varscan snp fpfilter bam-readcount somatic written 2.3 years ago by a01039012387 • 10 • updated 2.3 years ago by RamRS ♦ 30k
1
vote
0
answers
929
views
0
answers
Varscan somatic caller - Genotype calls
varscan somatic written 2.4 years ago by hsbinf • 20
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