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<prev • 67 results • page 1 of 3 • next >
4
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166
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5 follow
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Somatic vs Germline Variant Calling
variant calling somatic sequencing germline written 4 weeks ago by checkyodna • 0 • updated 4 weeks ago by Ram ♦ 14k
2
votes
0
answers
173
views
0
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call somatic CNV from cfDNA with normal control
cfdna somatic cnv written 6 weeks ago by CY • 100
1
vote
1
answer
154
views
1
answer
varscan2 somatic sip
somatic varscan2 snp written 10 weeks ago by fabbri.marco • 0
3
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1
answer
150
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1
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identifying TP53 germline mutations which are also in tumor cells.
somatic germline tp53 mutect varscan written 10 weeks ago by lait • 80 • updated 10 weeks ago by Noushin N • 500
7
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4
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4.8k
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4
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Software To Call Somatic Indels?
somatic cancer written 4.0 years ago by Jack • 60 • updated 12 weeks ago by Korsocius • 80
1
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1
answer
626
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9 follow
1
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Somatic variant call
varscan2.3.9 somatic mutect2 snp variat-filtering written 12 months ago by sktbanerjee1 • 30 • updated 3 months ago by liangqinsi • 20
14
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1
answer
3.1k
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8 follow
1
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Publicly Available Tumor/Normal Illumina Data For Evaluation Of Somatic Variant Callers
somatic variant written 5.5 years ago by Malachi Griffith ♦ 16k • updated 4 months ago by yhrytsenko • 0
7
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5
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1.6k
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5
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single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 20 months ago by Zhenyu • 180 • updated 5 months ago by daniel • 30
4
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0
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798
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5 follow
0
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tumor only variant calling tools
somatic ngs tumor mutation written 7 months ago by Zhenyu • 180
2
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2
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541
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2
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somatic calls by somatic SNV caller differ a lot, when comparing with cancer minors normal germline calls
somatic snv snp written 8 months ago by DVA • 430 • updated 8 months ago by d-cameron • 1.5k
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1
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506
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1
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some problem about VCF produced by PICARD VARSCAN SOMATIC command
vcf somatic picard written 21 months ago by yanghao • 0 • updated 10 months ago by jessieyuan666 • 0
24
votes
1
answer
673
views
7 follow
1
answer
Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 11 months ago by andreslanzos • 50 • updated 11 months ago by d-cameron • 1.5k
18
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1
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1.8k
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6 follow
1
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germline vs. somatic mutations in cancer samples
somatic whole exome sequencing germline written 11 months ago by maheetha.b • 30 • updated 11 months ago by Dan Gaston ♦ 7.0k
2
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0
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336
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0
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How do you interpret the presence of only one homozygote in a population, with no heterozygotes?
zygosity somatic biology germline written 12 months ago by anp375 • 120
0
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1
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405
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1
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Is it possible to extract somatic variants from paired VCF files?
vcf somatic written 13 months ago by csardas • 0 • updated 13 months ago by biomaster • 180
0
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0
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336
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0
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new to ngs- variant allele frequency
somatic next-gen limit of detection germline written 13 months ago by niro.pathirage • 0
3
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1
answer
547
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1
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Somatic variant caller
variant calling somatic next-gen written 13 months ago by CY • 100 • updated 13 months ago by markus.riester • 240
0
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0
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540
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0
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Varscan2 filters AND usability of the tool - looking for opinions
variant calling varscan varscan2 somatic written 13 months ago by user230613 • 260
2
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1
answer
704
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1
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Draw centromere on chromosome scatter plot
cnvkit plot cnv somatic written 15 months ago by alice.choury • 50 • updated 15 months ago by Eric T. • 2.1k
40
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2
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6.9k
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29 follow
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Tutorial: Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
vcf somatic tutorial tcga maf ensembl written 4.2 years ago by Cyriac Kandoth ♦ 4.9k
6
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2
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1.6k
views
2
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Where Can I Find Data Setnormal\Tumor Of Cancer?
data cancer mutation somatic written 4.2 years ago by mehrdadk.67 • 30 • updated 17 months ago by Kevin • 590
6
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1
answer
916
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1
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 17 months ago by Jerome Lin • 20 • updated 17 months ago by harold.smith.tarheel • 4.1k
2
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0
answers
576
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0
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Somatic mutations database with corresponding bam files
somatic bam mutation variant written 21 months ago by Rad • 790 • updated 19 months ago by Biostar ♦♦ 20
0
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1
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1.2k
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1
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raw data (fastq files) of whole exome sequencing (WES) of somatic mutations
somatic samples wes written 19 months ago by abedkurdi10 • 20 • updated 19 months ago by Medhat • 7.5k
6
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3
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3
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Somatic Mutation Phasing
somatic haplotype cancer written 4.2 years ago by Noushin N • 500 • updated 20 months ago by geek_y ♦ 8.3k
0
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2
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960
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2
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NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
somatic ngs panel written 22 months ago by always_learning • 870
2
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1
answer
1.1k
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1
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How to separate germline variants from somatic and vice-versa in cancer
somatic germline cancer written 2.1 years ago by MAPK • 1.2k • updated 2.1 years ago by Dan Gaston ♦ 7.0k
6
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3
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1.1k
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3
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Somatic allele frequency from TCGA in non-coding DNA
vcf somatic tcga allele written 2.3 years ago by sacha • 1.1k • updated 2.3 years ago by Amitm • 1.4k
3
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1
answer
1.4k
views
1
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Can germline vs somatic variants be distinguished by phasing when no control is available?
sequencing somatic germline phasing variants written 2.4 years ago by amjad • 20 • updated 2.4 years ago by donfreed • 1.2k
2
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2.6k
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1
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TCGA somatic mutation
somatic tcga mutation somatic mutation written 2.5 years ago by lilingjoyo • 10 • updated 2.5 years ago by Cyriac Kandoth ♦ 4.9k
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