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<prev • 75 results • page 1 of 3 • next >
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Why there is a 50% variant allele frequency in TCGA NSCLC data?
somatic tcga vaf snv variant alle frequency written 13 days ago by sm.hashemin • 60
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55
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Mutect v1 doesnt finds second alternative allele
gatk next-gen mutect somatic written 17 days ago by guffrann • 0
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267
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Tool: cnv_facets: somatic Copy Number Variant calling using the facets package
tool cancer somatic command line facets cnv written 3 months ago by dariober ♦ 9.9k
3
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1
answer
834
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1
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Somatic variant caller
variant calling somatic next-gen written 2.0 years ago by CY • 280 • updated 3 months ago by Biostar ♦♦ 20
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1
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404
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1
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Extract somatic mutations and germline mutations from variant calling files?
somatic cancer mutation germline variants written 7 months ago by ginnyli056 • 0 • updated 7 months ago by Emily_Ensembl ♦ 17k
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346
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Finding NEW Somatic Cancer Mutation Databases
somatic database cancer mutation data written 8 months ago by c7750 • 0 • updated 8 months ago by Biostar ♦♦ 20
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442
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Varscan fpfilter error
varscan snp fpfilter bam-readcount somatic written 8 months ago by a01039012387 • 10 • updated 8 months ago by RamRS ♦ 20k
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401
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Varscan somatic caller - Genotype calls
varscan somatic written 10 months ago by hshah • 20
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362
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The different results for the same tumor sample between VarScan2 somatic and mpileup2snp
mpileup2snp somatic varscan2 written 10 months ago by rayliu0115 • 0
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6 follow
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Somatic vs Germline Variant Calling
variant calling somatic sequencing germline written 12 months ago by checkyodna • 0 • updated 12 months ago by RamRS ♦ 20k
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510
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call somatic CNV from cfDNA with normal control
cfdna somatic cnv written 12 months ago by CY • 280
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1
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410
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varscan2 somatic sip
somatic varscan2 snp written 13 months ago by fabbri.marco • 0
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identifying TP53 germline mutations which are also in tumor cells.
somatic germline tp53 mutect varscan written 13 months ago by lait • 130 • updated 13 months ago by Noushin N • 550
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5 follow
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Software To Call Somatic Indels?
somatic cancer written 4.9 years ago by Jack • 60 • updated 13 months ago by Korsocius • 100
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9 follow
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Somatic variant call
varscan2.3.9 somatic mutect2 snp variat-filtering written 23 months ago by sktbanerjee1 • 30 • updated 14 months ago by liangqinsi • 20
15
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1
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3.8k
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9 follow
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Publicly Available Tumor/Normal Illumina Data For Evaluation Of Somatic Variant Callers
somatic variant written 6.4 years ago by Malachi Griffith ♦ 17k • updated 15 months ago by yhrytsenko • 0
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5
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5
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single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 2.6 years ago by Zhenyu Zhang • 240 • updated 16 months ago by daniel • 30
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5 follow
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tumor only variant calling tools
somatic ngs tumor mutation written 18 months ago by Zhenyu Zhang • 240
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somatic calls by somatic SNV caller differ a lot, when comparing with cancer minors normal germline calls
somatic snv snp written 19 months ago by DVA • 500 • updated 19 months ago by d-cameron • 2.0k
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1
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some problem about VCF produced by PICARD VARSCAN SOMATIC command
vcf somatic picard written 2.6 years ago by yanghao • 0 • updated 21 months ago by jessieyuan666 • 0
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1
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7 follow
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Are these false somatic variants? Visual inspection with IGV
somatic variant mutations snp igv written 22 months ago by andreslanzos • 50 • updated 22 months ago by d-cameron • 2.0k
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1
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3.7k
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8 follow
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germline vs. somatic mutations in cancer samples
somatic whole exome sequencing germline written 22 months ago by maheetha.b • 60 • updated 22 months ago by Dan Gaston ♦ 7.1k
2
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503
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How do you interpret the presence of only one homozygote in a population, with no heterozygotes?
zygosity somatic biology germline written 23 months ago by anp375 • 150
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1
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761
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1
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Is it possible to extract somatic variants from paired VCF files?
vcf somatic written 24 months ago by csardas • 0 • updated 24 months ago by biomaster • 180
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new to ngs- variant allele frequency
somatic next-gen limit of detection germline written 24 months ago by niro.pathirage • 0
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Varscan2 filters AND usability of the tool - looking for opinions
variant calling varscan varscan2 somatic written 2.0 years ago by user230613 • 270
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Draw centromere on chromosome scatter plot
cnvkit plot cnv somatic written 2.2 years ago by alice.choury • 50 • updated 2.2 years ago by Eric T. • 2.4k
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2
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29 follow
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Tutorial: Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
vcf somatic tutorial tcga maf ensembl written 5.1 years ago by Cyriac Kandoth ♦ 5.2k
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1.9k
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Where Can I Find Data Setnormal\Tumor Of Cancer?
data cancer mutation somatic written 5.1 years ago by mehrdadk.67 • 30 • updated 2.4 years ago by Kevin • 610
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1.4k
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1
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Gold Standard for Human cancer exome sequencing
somatic wes varscan mutect cancer written 2.4 years ago by Jerome Lin • 20 • updated 2.4 years ago by harold.smith.tarheel • 4.3k
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