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93
votes
6
answers
32k
views
43 follow
6
answers
46
votes
2
answers
22k
views
16 follow
2
answers
Difference Between Somatic And Germline Variant Calling?
variant-calling somatic gatk written 6.8 years ago by William4.7k • updated 5.2 years ago by Biostar ♦♦ 20
24
votes
2
answers
19k
views
13 follow
2
answers
Tcga: "Tumor, Matched Normal" Vs. "Normal, Matched Tumor"
somatic tcga snp written 6.6 years ago by Mdeng510 • updated 5.6 years ago by Chirag Nepal2.2k
78
votes
2
answers
18k
views
42 follow
2
answers
23
votes
2
answers
13k
views
17 follow
2
answers
Retreiving Data From Tcga Database
somatic tcga written 6.8 years ago by Iraz70 • updated 6.8 years ago by Chris Miller21k
17
votes
2
answers
13k
views
6 follow
2
answers
Polymorphism Vs Somatic Mutation
somatic snp genotyping written 9.4 years ago by User 6659970 • updated 9.4 years ago by David Quigley11k
40
votes
2
answers
8.9k
views
29 follow
2
answers
13
votes
2
answers
7.4k
views
12 follow
2
answers
Variant Filtration And Surprising Results
somatic dbsnp variant written 6.4 years ago by ao.carson90 • updated 6.4 years ago by Cyriac Kandoth5.5k
12
votes
1
answer
6.3k
views
6 follow
1
answer
How To Use Maf Files In The Absolute Software
maf somatic copynumber mutation tcga written 6.4 years ago by Danielk590 • updated 6.4 years ago by Cyriac Kandoth5.5k
8
votes
1
answer
6.1k
views
6 follow
1
answer
7
votes
4
answers
5.9k
views
5 follow
4
answers
Software To Call Somatic Indels?
somatic cancer written 6.3 years ago by Jack70 • updated 2.4 years ago by Korsocius160
24
votes
1
answer
4.8k
views
8 follow
1
answer
germline vs. somatic mutations in cancer samples
somatic whole exome sequencing germline written 3.2 years ago by maheetha.b70 • updated 3.2 years ago by DG7.1k
14
votes
2
answers
4.6k
views
8 follow
2
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3
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0
answers
4.6k
views
0
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15
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1
answer
4.5k
views
9 follow
1
answer
7
votes
3
answers
4.3k
views
5 follow
3
answers
Strelka Indel Allele Counts
indel somatic written 7.9 years ago by Richard570 • updated 6.2 years ago by Cyriac Kandoth5.5k
7
votes
1
answer
4.2k
views
1
answer
Low transition/transversion ratio: alignment or caller problem?
vcf somatic qc whole genome written 6.1 years ago by DoubleD130 • updated 6.1 years ago by Cyriac Kandoth5.5k
7
votes
5
answers
4.2k
views
5
answers
single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 3.9 years ago by Zhenyu Zhang270 • updated 2.7 years ago by daniel30
14
votes
2
answers
4.0k
views
11 follow
2
answers
Somatic vs Germline Variant Calling
variant calling somatic sequencing germline written 2.3 years ago by checkyodna20 • updated 2.3 years ago by RamRS27k
2
votes
1
answer
3.9k
views
1
answer
TCGA somatic mutation
somatic tcga mutation somatic mutation written 4.7 years ago by lilingjoyo30 • updated 4.7 years ago by Cyriac Kandoth5.5k
4
votes
1
answer
3.6k
views
6 follow
1
answer
tumor only variant calling tools
somatic ngs tumor mutation written 2.9 years ago by Zhenyu Zhang270 • updated 12 months ago by mariafirulevabio40
2
votes
1
answer
3.4k
views
1
answer
Multi-Sample Somatic Mutation Calling
variant-calling cancer somatic variant snp mutation written 6.3 years ago by jockbanan390 • updated 6.3 years ago by DG7.1k
1
vote
0
answers
3.3k
views
0
answers
Tool: Somaticsniper - Variant Caller Used For Somatic Snvs And Indels
somatic variant tool written 8.0 years ago by Malachi Griffith18k • updated 7.9 years ago by Istvan Albert ♦♦ 84k
6
votes
3
answers
3.1k
views
3
answers
Somatic Mutation Phasing
somatic haplotype cancer written 6.4 years ago by Noushin N580 • updated 3.9 years ago by geek_y11k
1
vote
1
answer
3.1k
views
1
answer
NOT RESETTING NORMAL error using Varscan2
variant-calling somatic varscan2 snp written 5.6 years ago by Jordan1.1k • updated 5.6 years ago by Ying W4.0k
0
votes
1
answer
2.9k
views
1
answer
raw data (fastq files) of whole exome sequencing (WES) of somatic mutations
somatic samples wes written 3.8 years ago by abedkurdi1030 • updated 3.8 years ago by Medhat8.7k
1
vote
0
answers
2.7k
views
0
answers
1
vote
1
answer
2.7k
views
1
answer
Confusion with Varscan somatic filters
varscan filters somatic written 5.6 years ago by mkaushal110 • updated 5.5 years ago by sergio.lois0
3
votes
0
answers
2.6k
views
0
answers
Reducing False Positive Indel Calls From Pindel
indel somatic variant pindel written 8.6 years ago by Rlong340 • updated 14 months ago by isaacpei0
1
vote
1
answer
2.5k
views
1
answer
Detecting Cancer Somatic Mutations From Multi-Sample Low-Pass Wgs Data
indel somatic snp cancer written 8.8 years ago by User 203220 • updated 8.8 years ago by Sean Davis26k
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