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<prev • 74 results • page 1 of 3 • next >
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Problem running QUAST assembly evaluation: quast tries to write to read-only FS
spades quast written 28 days ago by tospo • 40
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119
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Problem with memory requirements for SPades
assembly spades written 4 weeks ago by Tospohh • 10
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2
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2.8k
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Where can i get library.txt file for SSPACE?
sspace spades written 3.6 years ago by Calvin • 60 • updated 6 weeks ago by Naomifu • 0
55
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4
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601
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5 follow
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How to determine species of paired-end .fastq files (low mapping rates and inconsistent findings)
sendsketch spades bacteria kraken blast written 4 months ago by LRStar • 190 • updated 9 weeks ago by jbnrodriguez • 0
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197
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Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 3 months ago by claping • 0
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180
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Spades has been running for over a week. Normal?
genome assembly spades written 3 months ago by stacy734 • 40
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372
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1
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How to run spades.py for multiple files(fastq) at once?
assembly loop sequence fastq spades written 5 months ago by subrahmanya • 0
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1
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238
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1
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Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
spades mummer bacteria contig snp written 5 months ago by LRStar • 190 • updated 5 months ago by Joe ♦ 16k
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153
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Run Ray Assembler with multiple kmer values
genome assembly ray spades gene written 5 months ago by gustavojorge080 • 0
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192
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1
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what is Kmer coverage
genome assembly sequence metagenome spades written 5 months ago by vm.higareda • 20 • updated 5 months ago by Buffo • 1.8k
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166
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Does SPAdes assembler lose singlets?
assembly spades genomes written 5 months ago by stacy734 • 40
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398
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SPAdes error during assembly, error code -6
software error assembly spades written 6 months ago by marongiu.luigi • 460 • updated 6 months ago by h.mon ♦ 29k
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294
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SPAdes error code -6
assembly metagenomics spades written 7 months ago by Lina F • 160
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693
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Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
assembly spades quast contigs written 8 months ago by bioinforesearchquestions • 270 • updated 8 months ago by h.mon ♦ 29k
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Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
wgs assembly spades soap-denovo bacterial written 8 months ago by bioinforesearchquestions • 270 • updated 8 months ago by h.mon ♦ 29k
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286
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Assembly finished but output contig file is empty
assembly spades sequencing written 9 months ago by tchow5 • 0
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413
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 9 months ago by gustavo.teixeira • 0 • updated 9 months ago by ATpoint ♦ 29k
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8 follow
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 2.1 years ago by fhsantanna • 460 • updated 11 months ago by bhclement • 0
4
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1
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675
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Increase memory limit in SPAdes-3.6.1
hybrid assembly next-gen alignment spades written 11 months ago by ashaneev07 • 20 • updated 11 months ago by Buffo • 1.8k
5
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1
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902
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How to give merged reads as input in spades
merged assembly spades de novo written 13 months ago by manjumoorthy95 • 20 • updated 13 months ago by Joseph Hughes • 2.8k
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555
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 15 months ago by jeetsahu • 10 • updated 13 months ago by Biostar ♦♦ 20
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SPAdes stuck for almost 24h, restart it didn't work
spades written 14 months ago by lucia • 0 • updated 14 months ago by Joe ♦ 16k
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How to get a consensus of the contigs obtained from an assembler like spades?
consensus spades contigs written 14 months ago by DanielC • 100
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6 follow
1
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looping a list of trimed fasta files to run spades assembler
assembly loop sequence loop a list spades written 15 months ago by m.al_amiri • 20
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5 follow
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How do I access genome coverage using SPADES?
genome spades coverage myposts written 4.5 years ago by fhsantanna • 460 • updated 15 months ago by DanielC • 100
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Comparing SPAdes assemblies to each other?
spades denovo written 15 months ago by laurenkleine18 • 10
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1
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550
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Perl script review
perl spades written 15 months ago by Mostafa Mahmoud • 0 • updated 15 months ago by Michael Dondrup ♦ 47k
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1.2k
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SPAdes output with assembling warning
sequence-reads spades assembling iontorrent written 16 months ago by DanielC • 100
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de novo assembly of circular plasmid
de novo assembly spades plasmids written 17 months ago by kspata • 70 • updated 17 months ago by piet • 1.7k
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540
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Assembly NGS Reads from D-LOOP Wolf
assembly spades alignment written 18 months ago by netsam • 10
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