Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: spades • reset
or   Classic search
<prev • 32 results • page 1 of 2 • next >
1
vote
0
answers
188
views
0
answers
SPAdes is running out of memory
hybrid spades memory assembly fungi written 6 days ago by Lina F • 100 • updated 6 days ago by h.mon ♦ 8.0k
0
votes
0
answers
228
views
0
answers
MetaSpades can't access memory? Crashes when requesting 45 Gigs on a 128 Gig RHEL6 machine
metagenomics spades jemalloc malloc metaspades.py written 8 weeks ago by jnowacki • 0
7
votes
1
answer
338
views
5 follow
1
answer
SPAdes: <jemalloc>: Error in malloc(): out of memory
de novo assembly spades bacterial genome written 3 months ago by Paul • 40 • updated 3 months ago by h.mon ♦ 8.0k
4
votes
3
answers
2.0k
views
3
answers
How do I access genome coverage using SPADES?
genome spades coverage myposts written 24 months ago by fhsantanna • 290 • updated 4 months ago by shenwei356 • 3.2k
0
votes
1
answer
199
views
1
answer
Difficulty using SPAdes - Error relating to access and specificity
de novo assembler spades help software written 4 months ago by gfrsims • 0 • updated 4 months ago by h.mon ♦ 8.0k
3
votes
3
answers
745
views
3
answers
Denovo assembly SPAdes ERROR K-mer Counting: too many k-mers to fit into available memory limit
spades denovo assembly written 6 months ago by ambi1999 • 10 • updated 5 months ago by genomax ♦ 32k
3
votes
1
answer
442
views
1
answer
understanding contig statistics
assembly mapping reads qualimap coverage spades written 5 months ago by mary • 0 • updated 5 months ago by Brian Bushnell ♦ 13k
0
votes
0
answers
399
views
0
answers
rnaSPADES, assembly problems
assembly spades rna written 7 months ago by leonardomajul • 0
2
votes
1
answer
578
views
1
answer
Confusion about the kmer coverage
spades kmer written 9 months ago by Picasa • 300 • updated 9 months ago by mastal511 • 1.7k
1
vote
1
answer
450
views
1
answer
Minion data - how to deal with thousands of separate read files?
assembly next-gen minion spades written 10 months ago by jdaniels33 • 0 • updated 10 months ago by WouterDeCoster ♦ 20k
0
votes
0
answers
1.0k
views
0
answers
I keep getting an error when running Spades
assembly spades written 13 months ago by ibrahim.el.hamamy • 0 • updated 10 months ago by djurdjica.marosevic • 0
1
vote
1
answer
569
views
1
answer
SPADES assembly failed, unequal amount of reads
assembly paired-end spades written 11 months ago by kingcohn • 20 • updated 11 months ago by harold.smith.tarheel • 3.7k
1
vote
0
answers
648
views
0
answers
SPAdes insert size
genome spades miseq written 11 months ago by treitlis • 0
1
vote
2
answers
531
views
2
answers
Assembly method validation - am I doing it right?
genome assembly spades bacteria written 12 months ago by f2369583 • 10 • updated 12 months ago by st.ph.n • 1.2k
7
votes
0
answers
677
views
0
answers
Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 12 months ago by rrcutler • 80
6
votes
2
answers
749
views
2
answers
Where can i get library.txt file for SSPACE?
sspace spades written 12 months ago by Calvin • 50 • updated 12 months ago by Prasad • 1.5k
5
votes
4
answers
1.8k
views
4
answers
genome assembler SPAdes
assembly circular genomes linear form spades written 22 months ago by andynkili • 10 • updated 13 months ago by sergio.arredondo.alonso • 10
0
votes
0
answers
514
views
0
answers
Does SPades contigs.fasta contain unassembled reads?
de novo assembly assembly spades written 14 months ago by ciclistadan • 30
3
votes
5
answers
820
views
5
answers
High coverage bacterial genome reads causing spurious assemblies
assembly spades illumina written 17 months ago by b2060780 • 10 • updated 16 months ago by Rohit • 1.2k
4
votes
1
answer
626
views
1
answer
What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
assembly sequence spades plasmid written 17 months ago by jigarnt • 30 • updated 17 months ago by Chris Fields • 1.7k
0
votes
0
answers
582
views
0
answers
Failed to align paired reads
assembly spades written 18 months ago by dogdif • 0 • updated 18 months ago by Chris Miller ♦ 18k
0
votes
0
answers
708
views
0
answers
Metagenomic bin reassembly
assembly metagenomics spades written 19 months ago by vittorio.track90 • 0
3
votes
2
answers
2.0k
views
2
answers
Spades Assembler output
assembly contig spades written 21 months ago by midox • 180 • updated 21 months ago by MathGon • 10
11
votes
2
answers
2.0k
views
2
answers
Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
de novo assembly bacterial species spades written 22 months ago by ALchEmiXt • 1.8k
2
votes
1
answer
1.0k
views
1
answer
Is this mate pair insert size distribution to broad?
illumina spades mate pair written 22 months ago by mschmid • 90
2
votes
1
answer
739
views
1
answer
Assemble mix of two plasmids which have partially similar sequence
illumina spades plasmids assembly written 23 months ago by mschmid • 90
1
vote
0
answers
783
views
0
answers
Error with SRA downloaded reads and SPAdes 3.1.0
assembly spades written 23 months ago by jlimenitakis • 0
3
votes
1
answer
1.1k
views
1
answer
Forum: Behavior of short read assemblers regarding filtering out short contigs
assembly forum spades velvet minia written 2.3 years ago by Rayan Chikhi • 1.2k • updated 2.3 years ago by Damian Kao ♦ 14k
2
votes
0
answers
831
views
0
answers
Spades assembler artifacts? Contigs containing long nt stretches.
genome assembly spades artifacts contigs written 2.7 years ago by fhsantanna • 290
4
votes
1
answer
3.4k
views
1
answer
Doing genome assembly using SPAdes with mate-pair library only on public Galaxy server
assembly galaxy mate-pair spades written 3.0 years ago by sentausa • 610 • updated 2.8 years ago by anton • 40
<prev • 32 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • Belgium, just now
  • China, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 701 users visited in the last hour