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Showing: spades • reset
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<prev • 72 results • page 1 of 3 • next >
2
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Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 7 days ago by clapin • 0
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99
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Spades has been running for over a week. Normal?
genome assembly spades written 11 days ago by stacy734 • 40
55
votes
3
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410
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3
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How to determine species of paired-end .fastq files (low mapping rates and inconsistent findings)
sendsketch spades bacteria kraken blast written 6 weeks ago by LRStar • 190 • updated 6 weeks ago by Mensur Dlakic • 2.1k
5
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1
answer
212
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1
answer
How to run spades.py for multiple files(fastq) at once?
assembly loop sequence fastq spades written 8 weeks ago by subrahmanya • 0
4
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1
answer
163
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1
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Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
spades mummer bacteria contig snp written 10 weeks ago by LRStar • 190 • updated 10 weeks ago by Joe ♦ 14k
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105
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Run Ray Assembler with multiple kmer values
genome assembly ray spades gene written 10 weeks ago by gustavojorge080 • 0
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1
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127
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1
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what is Kmer coverage
genome assembly sequence metagenome spades written 11 weeks ago by vm.higareda • 20 • updated 11 weeks ago by Buffo • 1.7k
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128
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Does SPAdes assembler lose singlets?
assembly spades genomes written 11 weeks ago by stacy734 • 40
3
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1
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223
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1
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SPAdes error during assembly, error code -6
software error assembly spades written 3 months ago by marongiu.luigi • 420 • updated 3 months ago by h.mon ♦ 28k
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210
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SPAdes error code -6
assembly metagenomics spades written 4 months ago by Lina F • 160
3
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1
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429
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1
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Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
assembly spades quast contigs written 5 months ago by bioinforesearchquestions • 270 • updated 5 months ago by h.mon ♦ 28k
5
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1
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324
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1
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Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
wgs assembly spades soap-denovo bacterial written 5 months ago by bioinforesearchquestions • 270 • updated 5 months ago by h.mon ♦ 28k
0
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227
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Assembly finished but output contig file is empty
assembly spades sequencing written 5 months ago by tchow5 • 0
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306
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0
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 6 months ago by gustavo.teixeira • 0 • updated 6 months ago by ATpoint ♦ 25k
9
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3
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3.0k
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8 follow
3
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 22 months ago by fhsantanna • 440 • updated 8 months ago by bhclement • 0
4
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1
answer
515
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1
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Increase memory limit in SPAdes-3.6.1
hybrid assembly next-gen alignment spades written 8 months ago by ashaneev07 • 10 • updated 8 months ago by Buffo • 1.7k
5
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1
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674
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1
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How to give merged reads as input in spades
merged assembly spades de novo written 10 months ago by manjumoorthy95 • 20 • updated 10 months ago by Joseph Hughes • 2.8k
2
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464
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 12 months ago by jeetsahu • 10 • updated 10 months ago by Biostar ♦♦ 20
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365
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SPAdes stuck for almost 24h, restart it didn't work
spades written 10 months ago by lucia • 0 • updated 10 months ago by Joe ♦ 14k
0
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558
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How to get a consensus of the contigs obtained from an assembler like spades?
consensus spades contigs written 11 months ago by DanielC • 100
8
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1
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858
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6 follow
1
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looping a list of trimed fasta files to run spades assembler
assembly loop sequence loop a list spades written 12 months ago by m.al_amiri • 20
12
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3
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5.6k
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3
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How do I access genome coverage using SPADES?
genome spades coverage myposts written 4.2 years ago by fhsantanna • 440 • updated 12 months ago by DanielC • 100
1
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247
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0
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Comparing SPAdes assemblies to each other?
spades denovo written 12 months ago by laurenkleine18 • 10
3
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1
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481
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1
answer
Perl script review
perl spades written 12 months ago by Mostafa Mahmoud • 0 • updated 12 months ago by Michael Dondrup ♦ 46k
5
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0
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1.0k
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0
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SPAdes output with assembling warning
sequence-reads spades assembling iontorrent written 13 months ago by DanielC • 100
1
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1
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645
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1
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de novo assembly of circular plasmid
de novo assembly spades plasmids written 13 months ago by kspata • 60 • updated 13 months ago by piet • 1.7k
0
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482
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Assembly NGS Reads from D-LOOP Wolf
assembly spades alignment written 15 months ago by netsam • 10
0
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416
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0
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Does rnaSPAdes represent a convenient assembler for RNA viruses?
assembly spades rna virus kmer written 16 months ago by Guillermo D. Huerta • 10
1
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609
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solution for SPades to assemble genome with low quality data
assembly ion-torrent spades single-end written 16 months ago by StudentBio • 0 • updated 16 months ago by Sej Modha ♦ 4.5k
11
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2
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Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
de novo assembly bacterial species spades written 4.1 years ago by ALchEmiXt • 1.9k • updated 16 months ago by Biostar ♦♦ 20
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