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<prev • 81 results • page 1 of 3 • next >
1
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memory allocation in metaSpades
assembly metagenomics spades ram written 18 days ago by Maorkn • 0 • updated 18 days ago by genomax ♦ 91k
2
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1
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369
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5 follow
1
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Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 11 months ago by claping • 0 • updated 26 days ago by appiahv • 0
3
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1
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241
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1
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Finding structural variants after Spades
sv spades vg written 12 weeks ago by Pierre Lindenbaum ♦ 131k • updated 28 days ago by samuel.a.odonnell • 60
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3
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185
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3
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contigs of spades
assembly spades written 8 weeks ago by sami • 20 • updated 8 weeks ago by swbarnes2 ♦ 8.9k
1
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1
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129
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1
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Rename and move Spades assemblies in batch
batch spades bash written 9 weeks ago by jellila • 0 • updated 9 weeks ago by Asaf ♦ 8.4k
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1
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7.7k
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1
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SPAdes is running out of memory
hybrid spades memory assembly fungi written 3.2 years ago by Lina F • 190 • updated 12 weeks ago by carisdak • 0
4
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1
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135
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1
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SPAdes run with different results
spades written 3 months ago by lizabe • 10
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2
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483
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9 follow
2
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Comparing SPAdes assemblies to each other?
spades denovo written 24 months ago by laurenkleine18 • 20 • updated 3 months ago by h.mon ♦ 31k
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233
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1
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Generate single genome consensus fasta file from SPAdes output: viral genome sequencing
genome fasta spades viral genome assembly virus written 5 months ago by snow_seq • 0 • updated 5 months ago by Asaf ♦ 8.4k
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185
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Determining reason for low quality assembly
assembly spades written 7 months ago by liorglic • 340
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422
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2
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Problem running QUAST assembly evaluation: quast tries to write to read-only FS
spades quast written 9 months ago by tospo • 50
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251
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0
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Problem with memory requirements for SPades
assembly spades written 9 months ago by Tospohh • 10
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3.3k
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2
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Where can i get library.txt file for SSPACE?
sspace spades written 4.3 years ago by Calvin • 60 • updated 9 months ago by Naomifu • 0
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4
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5 follow
4
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How to determine species of paired-end .fastq files (low mapping rates and inconsistent findings)
sendsketch spades bacteria kraken blast written 13 months ago by LRStar • 190 • updated 10 months ago by jbnrodriguez • 0
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333
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Spades has been running for over a week. Normal?
genome assembly spades written 12 months ago by stacy734 • 40
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1
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1
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How to run spades.py for multiple files(fastq) at once?
assembly loop sequence fastq spades written 13 months ago by Nyksubuz • 0
4
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1
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446
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1
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Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
spades mummer bacteria contig snp written 14 months ago by LRStar • 190 • updated 14 months ago by Joe ♦ 18k
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258
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Run Ray Assembler with multiple kmer values
genome assembly ray spades gene written 14 months ago by gustavojorge080 • 0
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1
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344
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1
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what is Kmer coverage
genome assembly sequence metagenome spades written 14 months ago by vm.higareda • 20 • updated 14 months ago by Buffo • 1.8k
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241
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Does SPAdes assembler lose singlets?
assembly spades genomes written 14 months ago by stacy734 • 40
3
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1
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988
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1
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SPAdes error during assembly, error code -6
software error assembly spades written 15 months ago by marongiu.luigi • 520 • updated 15 months ago by h.mon ♦ 31k
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612
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SPAdes error code -6
assembly metagenomics spades written 15 months ago by Lina F • 190
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1
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Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
assembly spades quast contigs written 16 months ago by bioinforesearchquestions • 280 • updated 16 months ago by h.mon ♦ 31k
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1
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Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
wgs assembly spades soap-denovo bacterial written 17 months ago by bioinforesearchquestions • 280 • updated 17 months ago by h.mon ♦ 31k
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487
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Assembly finished but output contig file is empty
assembly spades sequencing written 17 months ago by tchow5 • 0
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716
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 17 months ago by gustavo.teixeira • 0 • updated 17 months ago by ATpoint ♦ 40k
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8 follow
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 2.8 years ago by fhsantanna • 490 • updated 19 months ago by bhclement • 0
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1
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1
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Increase memory limit in SPAdes-3.6.1
hybrid assembly next-gen alignment spades written 20 months ago by ashaneev07 • 20 • updated 20 months ago by Buffo • 1.8k
5
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1
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1.4k
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1
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How to give merged reads as input in spades
merged assembly spades de novo written 21 months ago by manjumoorthy95 • 20 • updated 21 months ago by Joseph Hughes • 2.8k
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758
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 24 months ago by jeetsahu • 10 • updated 21 months ago by Biostar ♦♦ 20
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