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<prev • 36 results • page 1 of 2 • next >
0
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165
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Doubt about specifying options in SPAdes
assembly metagenomics spades written 21 days ago by inaciogmedeiros • 0
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0
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146
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Illumina paired end read header difference- SPAdes bwa run ERROR
software error assembly spades genome written 28 days ago by ranjeet.maurya • 0 • updated 28 days ago by genomax ♦ 34k
4
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1
answer
263
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1
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SPAdes assembler k-mer > default 127 possible?
k-mer spades genome assembly written 7 weeks ago by Anand Rao • 100 • updated 7 weeks ago by Brian Bushnell ♦ 14k
2
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0
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197
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5 follow
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Tips for increasing metaSPAdes assembly speed for 7 billion reads?
reads assembly metaspades spades metagenome written 8 weeks ago by anin.gregory • 70
1
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0
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382
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SPAdes is running out of memory
hybrid spades memory assembly fungi written 9 weeks ago by Lina F • 110 • updated 9 weeks ago by h.mon ♦ 9.0k
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338
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MetaSpades can't access memory? Crashes when requesting 45 Gigs on a 128 Gig RHEL6 machine
metagenomics spades jemalloc malloc metaspades.py written 3 months ago by jnowacki • 0
7
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1
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489
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SPAdes: <jemalloc>: Error in malloc(): out of memory
de novo assembly spades bacterial genome written 5 months ago by Paul • 50 • updated 5 months ago by h.mon ♦ 9.0k
4
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3
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2.2k
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3
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How do I access genome coverage using SPADES?
genome spades coverage myposts written 2.2 years ago by fhsantanna • 340 • updated 6 months ago by shenwei356 • 3.4k
0
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247
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1
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Difficulty using SPAdes - Error relating to access and specificity
de novo assembler spades help software written 6 months ago by gfrsims • 0 • updated 6 months ago by h.mon ♦ 9.0k
3
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3
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1.0k
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3
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Denovo assembly SPAdes ERROR K-mer Counting: too many k-mers to fit into available memory limit
spades denovo assembly written 8 months ago by ambi1999 • 10 • updated 7 months ago by genomax ♦ 34k
3
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1
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580
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5 follow
1
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understanding contig statistics
assembly mapping reads qualimap coverage spades written 8 months ago by mary • 0 • updated 8 months ago by Brian Bushnell ♦ 14k
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497
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rnaSPADES, assembly problems
assembly spades rna written 9 months ago by leonardomajul • 0
3
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1
answer
794
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1
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Confusion about the kmer coverage
spades kmer written 11 months ago by Picasa • 310 • updated 11 months ago by mastal511 • 1.7k
1
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1
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517
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1
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Minion data - how to deal with thousands of separate read files?
assembly next-gen minion spades written 12 months ago by jdaniels33 • 0 • updated 12 months ago by WouterDeCoster ♦ 22k
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1.1k
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0
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I keep getting an error when running Spades
assembly spades written 15 months ago by ibrahim.el.hamamy • 0 • updated 12 months ago by djurdjica.marosevic • 0
1
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1
answer
653
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1
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SPADES assembly failed, unequal amount of reads
assembly paired-end spades written 13 months ago by kingcohn • 20 • updated 13 months ago by harold.smith.tarheel • 3.8k
1
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0
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726
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SPAdes insert size
genome spades miseq written 13 months ago by treitlis • 0
1
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2
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615
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2
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Assembly method validation - am I doing it right?
genome assembly spades bacteria written 14 months ago by f2369583 • 10 • updated 14 months ago by st.ph.n • 1.8k
7
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0
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831
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0
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Increasing kmer limit in SPAdes
assembly spades velvet bacterial written 14 months ago by rrcutler • 90
6
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2
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850
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2
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Where can i get library.txt file for SSPACE?
sspace spades written 15 months ago by Calvin • 50 • updated 15 months ago by Prasad • 1.5k
7
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4
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4
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genome assembler SPAdes
assembly circular genomes linear form spades written 24 months ago by andynkili • 10 • updated 15 months ago by sergio.arredondo.alonso • 20
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564
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Does SPades contigs.fasta contain unassembled reads?
de novo assembly assembly spades written 16 months ago by ciclistadan • 30
7
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5
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885
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5
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High coverage bacterial genome reads causing spurious assemblies
assembly spades illumina written 19 months ago by b2060780 • 10 • updated 18 months ago by Rohit • 1.3k
4
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1
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669
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1
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What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
assembly sequence spades plasmid written 19 months ago by jigarnt • 30 • updated 19 months ago by Chris Fields • 1.8k
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633
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Failed to align paired reads
assembly spades written 20 months ago by dogdif • 0 • updated 20 months ago by Chris Miller ♦ 18k
0
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750
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Metagenomic bin reassembly
assembly metagenomics spades written 21 months ago by vittorio.track90 • 0
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2
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2.1k
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2
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Spades Assembler output
assembly contig spades written 23 months ago by midox • 190 • updated 23 months ago by MathGon • 10
11
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2
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2.1k
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2
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Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
de novo assembly bacterial species spades written 2.1 years ago by ALchEmiXt • 1.8k
2
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1
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Is this mate pair insert size distribution to broad?
illumina spades mate pair written 2.0 years ago by mschmid • 90
2
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1
answer
782
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1
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Assemble mix of two plasmids which have partially similar sequence
illumina spades plasmids assembly written 2.1 years ago by mschmid • 90
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