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<prev • 49 results • page 1 of 2 • next >
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Assembly NGS Reads from D-LOOP Wolf
assembly spades alignment written 6 weeks ago by netsam • 10
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Does rnaSPAdes represent a convenient assembler for RNA viruses?
assembly spades rna virus kmer written 8 weeks ago by Guillermo D. Huerta • 10
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solution for SPades to assemble genome with low quality data
assembly ion-torrent spades single-end written 9 weeks ago by StudentBio • 0 • updated 9 weeks ago by Sej Modha ♦ 3.6k
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Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
de novo assembly bacterial species spades written 3.0 years ago by ALchEmiXt • 1.9k • updated 12 weeks ago by Biostar ♦♦ 20
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SPAdes assembler k-mer > default 127 possible?
k-mer spades genome assembly written 13 months ago by Anand Rao • 160 • updated 4 months ago by ikangkim • 10
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327
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How to identify single-copy genes across multiple complete genomes?
target capture spades hybpiper single-copy genes written 4 months ago by Santiago Montero-Mendieta • 100
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5 follow
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Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
assembly 16s rrna spades reago written 4 months ago by dark.lord • 0
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SPAdes assembler-Error code -6
assembler spades error error -6 written 4 months ago by Menia_gavr • 0
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SPAdes assembler-Error code 255
de novo assembly assembly spades error 255 written 4 months ago by Menia_gavr • 0
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379
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The --contig option for SPAdes
assembly contig spades written 5 months ago by 934963534 • 10 • updated 5 months ago by dark.lord • 0
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259
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Paralog detection after target capture - HybPiper
hybpiper exonerate spades target capture paralogy written 5 months ago by Santiago Montero-Mendieta • 100
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244
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What do Ns represent in a SPAdes assembly from single-end reads?
assembly spades written 6 months ago by kcamnairb • 40 • updated 6 months ago by lieven.sterck • 2.3k
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7 follow
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 8 months ago by fhsantanna • 410
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302
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IS-rich bacterial genome assembly
assembly spades is prokaryote written 10 months ago by Yury_M • 0
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Using SPAdes for assembling mitochondrial and viral genomes
genome assembly spades mitochondrial written 10 months ago by ropolocan • 430
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648
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5 follow
1
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Doubt about specifying options in SPAdes
assembly metagenomics spades written 11 months ago by inaciogmedeiros • 10
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Illumina paired end read header difference- SPAdes bwa run ERROR
software error assembly spades genome written 12 months ago by ranjeet_maurya • 0 • updated 12 months ago by genomax ♦ 55k
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5 follow
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Tips for increasing metaSPAdes assembly speed for 7 billion reads?
reads assembly metaspades spades metagenome written 13 months ago by anin.gregory • 80
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SPAdes is running out of memory
hybrid spades memory assembly fungi written 13 months ago by Lina F • 150 • updated 13 months ago by h.mon ♦ 19k
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MetaSpades can't access memory? Crashes when requesting 45 Gigs on a 128 Gig RHEL6 machine
metagenomics spades jemalloc malloc metaspades.py written 15 months ago by jnowacki • 60
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6 follow
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SPAdes: <jemalloc>: Error in malloc(): out of memory
de novo assembly spades bacterial genome written 16 months ago by Paul • 60 • updated 16 months ago by h.mon ♦ 19k
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3
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3
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How do I access genome coverage using SPADES?
genome spades coverage myposts written 3.1 years ago by fhsantanna • 410 • updated 17 months ago by shenwei356 ♦ 4.1k
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690
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1
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Difficulty using SPAdes - Error relating to access and specificity
de novo assembler spades help software written 18 months ago by gfrsims • 0 • updated 18 months ago by h.mon ♦ 19k
9
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3
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2.8k
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6 follow
3
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Denovo assembly SPAdes ERROR K-mer Counting: too many k-mers to fit into available memory limit
spades denovo assembly written 19 months ago by ambi1999 • 30 • updated 19 months ago by genomax ♦ 55k
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1.3k
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6 follow
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understanding contig statistics
assembly mapping reads qualimap coverage spades written 19 months ago by mary • 0 • updated 19 months ago by Brian Bushnell ♦ 15k
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994
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rnaSPADES, assembly problems
assembly spades rna written 21 months ago by leonardomajul • 0
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2.5k
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1
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Confusion about the kmer coverage
spades kmer written 22 months ago by Picasa • 380 • updated 22 months ago by mastal511 • 2.0k
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1
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1.2k
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1
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Minion data - how to deal with thousands of separate read files?
assembly next-gen minion spades written 23 months ago by jdaniels33 • 0 • updated 23 months ago by WouterDeCoster ♦ 32k
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I keep getting an error when running Spades
assembly spades written 2.2 years ago by ibrahim.el.hamamy • 0 • updated 23 months ago by djurdjica.marosevic • 0
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SPADES assembly failed, unequal amount of reads
assembly paired-end spades written 2.0 years ago by kingcohn • 20 • updated 2.0 years ago by harold.smith.tarheel • 4.2k
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