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<prev • 63 results • page 1 of 3 • next >
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SPAdes error code -6
assembly metagenomics spades written 14 days ago by Lina F • 150
3
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1
answer
218
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1
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Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
assembly spades quast contigs written 5 weeks ago by bioinforesearchquestions • 240 • updated 5 weeks ago by h.mon ♦ 26k
4
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1
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195
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1
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Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
wgs assembly spades soap-denovo bacterial written 7 weeks ago by bioinforesearchquestions • 240 • updated 7 weeks ago by h.mon ♦ 26k
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155
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Assembly finished but output contig file is empty
assembly spades sequencing written 9 weeks ago by tchow5 • 0
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153
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 10 weeks ago by gustavo.teixeira • 0 • updated 10 weeks ago by ATpoint ♦ 19k
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3
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8 follow
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 18 months ago by fhsantanna • 440 • updated 4 months ago by bhclement • 0
4
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1
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336
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1
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Increase memory limit in SPAdes-3.6.1
hybrid assembly next-gen alignment spades written 4 months ago by ashaneev07 • 10 • updated 4 months ago by Buffo • 1.6k
5
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1
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466
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1
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How to give merged reads as input in spades
merged assembly spades de novo written 6 months ago by manjumoorthy95 • 10 • updated 6 months ago by Joseph Hughes • 2.7k
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350
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 8 months ago by jeetsahu • 10 • updated 6 months ago by Biostar ♦♦ 20
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271
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SPAdes stuck for almost 24h, restart it didn't work
spades written 7 months ago by lucia • 0 • updated 7 months ago by jrj.healey ♦ 13k
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419
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How to get a consensus of the contigs obtained from an assembler like spades?
consensus spades contigs written 7 months ago by DanielC • 90
8
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1
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652
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6 follow
1
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looping a list of trimed fasta files to run spades assembler
assembly loop sequence loop a list spades written 8 months ago by m.al_amiri • 20
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5.1k
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3
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How do I access genome coverage using SPADES?
genome spades coverage myposts written 3.9 years ago by fhsantanna • 440 • updated 8 months ago by DanielC • 90
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185
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Comparing SPAdes assemblies to each other?
spades denovo written 8 months ago by laurenkleine18 • 10
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1
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410
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1
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Perl script review
perl spades written 8 months ago by Mostafa Mahmoud • 0 • updated 8 months ago by Michael Dondrup ♦ 46k
5
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0
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790
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SPAdes output with assembling warning
sequence-reads spades assembling iontorrent written 9 months ago by DanielC • 90
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1
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529
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1
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de novo assembly of circular plasmid
de novo assembly spades plasmids written 9 months ago by kspata • 60 • updated 9 months ago by piet • 1.7k
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413
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Assembly NGS Reads from D-LOOP Wolf
assembly spades alignment written 11 months ago by netsam • 10
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348
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Does rnaSPAdes represent a convenient assembler for RNA viruses?
assembly spades rna virus kmer written 12 months ago by Guillermo D. Huerta • 10
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494
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solution for SPades to assemble genome with low quality data
assembly ion-torrent spades single-end written 12 months ago by StudentBio • 0 • updated 12 months ago by Sej Modha ♦ 4.2k
11
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2
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3.7k
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2
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Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
de novo assembly bacterial species spades written 3.8 years ago by ALchEmiXt • 1.9k • updated 13 months ago by Biostar ♦♦ 20
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1.3k
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2
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SPAdes assembler k-mer > default 127 possible?
k-mer spades genome assembly written 23 months ago by Anand Rao • 210 • updated 14 months ago by ikangkim • 30
4
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1
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923
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1
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How to identify single-copy genes across multiple complete genomes?
target capture spades hybpiper single-copy genes written 14 months ago by Santiago Montero-Mendieta • 120
3
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840
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5 follow
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Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
assembly 16s rrna spades reago written 15 months ago by dark.lord • 0
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SPAdes assembler-Error code -6
assembler spades error error -6 written 15 months ago by Menia_gavr • 0
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SPAdes assembler-Error code 255
de novo assembly assembly spades error 255 written 15 months ago by Menia_gavr • 0
3
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1
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1.0k
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1
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The --contig option for SPAdes
assembly contig spades written 15 months ago by 934963534 • 20 • updated 15 months ago by dark.lord • 0
1
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572
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Paralog detection after target capture - HybPiper
hybpiper exonerate spades target capture paralogy written 15 months ago by Santiago Montero-Mendieta • 120
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511
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1
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What do Ns represent in a SPAdes assembly from single-end reads?
assembly spades written 16 months ago by kcamnairb • 40 • updated 16 months ago by lieven.sterck ♦ 5.5k
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503
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IS-rich bacterial genome assembly
assembly spades is prokaryote written 20 months ago by Yury_M • 0
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