Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: spades • reset
or   Classic search
<prev • 59 results • page 1 of 2 • next >
4
votes
1
answer
150
views
1
answer
Increase memory limit in SPAdes-3.6.1
hybrid assembly next-gen alignment spades written 13 days ago by ashaneev07 • 0 • updated 13 days ago by Buffo • 1.3k
5
votes
1
answer
248
views
1
answer
How to give merged reads as input in spades
merged assembly spades de novo written 8 weeks ago by manjumoorthy95 • 0 • updated 8 weeks ago by Joseph Hughes • 2.7k
2
votes
0
answers
225
views
0
answers
Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 4 months ago by jeetsahu • 0 • updated 9 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
155
views
0
answers
SPAdes stuck for almost 24h, restart it didn't work
spades written 12 weeks ago by lucia • 0 • updated 12 weeks ago by jrj.healey ♦ 11k
0
votes
0
answers
225
views
0
answers
How to get a consensus of the contigs obtained from an assembler like spades?
consensus spades contigs written 3 months ago by DK • 80
8
votes
1
answer
412
views
5 follow
1
answer
looping a list of trimed fasta files to run spades assembler
assembly loop sequence loop a list spades written 4 months ago by m.al_amiri • 20
12
votes
3
answers
4.5k
views
3
answers
How do I access genome coverage using SPADES?
genome spades coverage myposts written 3.6 years ago by fhsantanna • 440 • updated 3 months ago by DK • 80
1
vote
0
answers
134
views
0
answers
Comparing SPAdes assemblies to each other?
spades denovo written 4 months ago by laurenkleine18 • 10
3
votes
1
answer
322
views
1
answer
Perl script review
perl spades written 4 months ago by Mostafa Mahmoud • 0 • updated 4 months ago by Michael Dondrup ♦ 45k
5
votes
0
answers
503
views
0
answers
SPAdes output with assembling warning
sequence-reads spades assembling iontorrent written 5 months ago by DK • 80
1
vote
1
answer
360
views
1
answer
de novo assembly of circular plasmid
de novo assembly spades plasmids written 5 months ago by kspata • 40 • updated 5 months ago by piet • 1.6k
0
votes
0
answers
335
views
0
answers
Assembly NGS Reads from D-LOOP Wolf
assembly spades alignment written 7 months ago by netsam • 10
0
votes
0
answers
252
views
0
answers
Does rnaSPAdes represent a convenient assembler for RNA viruses?
assembly spades rna virus kmer written 7 months ago by Guillermo D. Huerta • 10
1
vote
0
answers
373
views
0
answers
solution for SPades to assemble genome with low quality data
assembly ion-torrent spades single-end written 8 months ago by StudentBio • 0 • updated 8 months ago by Sej Modha ♦ 4.1k
11
votes
2
answers
3.4k
views
2
answers
Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
de novo assembly bacterial species spades written 3.5 years ago by ALchEmiXt • 1.9k • updated 8 months ago by Biostar ♦♦ 20
8
votes
2
answers
1.1k
views
2
answers
SPAdes assembler k-mer > default 127 possible?
k-mer spades genome assembly written 18 months ago by Anand Rao • 210 • updated 10 months ago by ikangkim • 30
4
votes
1
answer
711
views
1
answer
How to identify single-copy genes across multiple complete genomes?
target capture spades hybpiper single-copy genes written 10 months ago by Santiago Montero-Mendieta • 110
3
votes
0
answers
542
views
5 follow
0
answers
Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
assembly 16s rrna spades reago written 10 months ago by dark.lord • 0
0
votes
0
answers
769
views
0
answers
SPAdes assembler-Error code -6
assembler spades error error -6 written 10 months ago by Menia_gavr • 0
1
vote
1
answer
2.2k
views
1
answer
SPAdes assembler-Error code 255
de novo assembly assembly spades error 255 written 10 months ago by Menia_gavr • 0
3
votes
1
answer
759
views
1
answer
The --contig option for SPAdes
assembly contig spades written 11 months ago by 934963534 • 10 • updated 11 months ago by dark.lord • 0
1
vote
0
answers
449
views
0
answers
Paralog detection after target capture - HybPiper
hybpiper exonerate spades target capture paralogy written 11 months ago by Santiago Montero-Mendieta • 110
1
vote
1
answer
405
views
1
answer
What do Ns represent in a SPAdes assembly from single-end reads?
assembly spades written 12 months ago by kcamnairb • 40 • updated 12 months ago by lieven.sterck ♦ 4.1k
9
votes
3
answers
1.9k
views
7 follow
3
answers
Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 14 months ago by fhsantanna • 440
0
votes
0
answers
409
views
0
answers
IS-rich bacterial genome assembly
assembly spades is prokaryote written 16 months ago by Yury_M • 0
3
votes
0
answers
1.0k
views
0
answers
Using SPAdes for assembling mitochondrial and viral genomes
genome assembly spades mitochondrial written 16 months ago by ropolocan • 500
0
votes
1
answer
920
views
5 follow
1
answer
Doubt about specifying options in SPAdes
assembly metagenomics spades written 17 months ago by inaciogmedeiros • 10
0
votes
0
answers
830
views
0
answers
Illumina paired end read header difference- SPAdes bwa run ERROR
software error assembly spades genome written 18 months ago by ranjeet_maurya • 0 • updated 18 months ago by genomax ♦ 63k
2
votes
0
answers
1.2k
views
5 follow
0
answers
Tips for increasing metaSPAdes assembly speed for 7 billion reads?
reads assembly metaspades spades metagenome written 19 months ago by anin.gregory • 80
2
votes
0
answers
3.0k
views
0
answers
SPAdes is running out of memory
hybrid spades memory assembly fungi written 19 months ago by Lina F • 150 • updated 19 months ago by h.mon ♦ 24k
<prev • 59 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • Czech Republic, just now
  • Danville, PA, 1 minute ago
  • United States, 2 minutes ago
  • United Kingdom, 2 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1914 users visited in the last hour