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<prev • 82 results • page 1 of 3 • next >
0
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Spades error when trying to specify options.
assembly spades written 10 weeks ago by MJ1996 • 0
1
vote
1
answer
157
views
1
answer
memory allocation in metaSpades
assembly metagenomics spades ram written 3 months ago by Maorkn • 0 • updated 3 months ago by GenoMax ♦ 94k
2
votes
1
answer
439
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5 follow
1
answer
Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 14 months ago by claping • 0 • updated 3 months ago by appiahv • 0
3
votes
1
answer
339
views
1
answer
Finding structural variants after Spades
sv spades vg written 5 months ago by Pierre Lindenbaum ♦ 133k • updated 3 months ago by samuel.a.odonnell • 70
6
votes
3
answers
247
views
3
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contigs of spades
assembly spades written 4 months ago by sami • 20 • updated 4 months ago by swbarnes2 ♦ 9.3k
1
vote
1
answer
204
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1
answer
Rename and move Spades assemblies in batch
batch spades bash written 4 months ago by jellila • 0 • updated 4 months ago by Asaf ♦ 8.5k
3
votes
1
answer
8.3k
views
1
answer
SPAdes is running out of memory
hybrid spades memory assembly fungi written 3.4 years ago by Lina F • 200 • updated 5 months ago by carisdak • 0
4
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1
answer
173
views
1
answer
SPAdes run with different results
spades written 5 months ago by lizabe • 10
3
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2
answers
564
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9 follow
2
answers
Comparing SPAdes assemblies to each other?
spades denovo written 2.2 years ago by laurenkleine18 • 20 • updated 6 months ago by h.mon ♦ 32k
0
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1
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299
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1
answer
Generate single genome consensus fasta file from SPAdes output: viral genome sequencing
genome fasta spades viral genome assembly virus written 8 months ago by snow_seq • 0 • updated 8 months ago by Asaf ♦ 8.5k
0
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0
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234
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0
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Determining reason for low quality assembly
assembly spades written 10 months ago by liorglic • 340
1
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2
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527
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2
answers
Problem running QUAST assembly evaluation: quast tries to write to read-only FS
spades quast written 11 months ago by tospo • 50
0
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0
answers
285
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0
answers
Problem with memory requirements for SPades
assembly spades written 12 months ago by Tospohh • 10
6
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2
answers
3.4k
views
2
answers
Where can i get library.txt file for SSPACE?
sspace spades written 4.5 years ago by Calvin • 60 • updated 12 months ago by Naomifu • 0
55
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4
answers
1.2k
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5 follow
4
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How to determine species of paired-end .fastq files (low mapping rates and inconsistent findings)
sendsketch spades bacteria kraken blast written 15 months ago by LRStar • 190 • updated 13 months ago by jbnrodriguez • 0
0
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0
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396
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0
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Spades has been running for over a week. Normal?
genome assembly spades written 14 months ago by stacy734 • 40
5
votes
1
answer
1.2k
views
1
answer
How to run spades.py for multiple files(fastq) at once?
assembly loop sequence fastq spades written 16 months ago by Nyksubuz • 10
4
votes
1
answer
521
views
1
answer
Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
spades mummer bacteria contig snp written 16 months ago by LRStar • 190 • updated 16 months ago by Joe ♦ 18k
0
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0
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285
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0
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Run Ray Assembler with multiple kmer values
genome assembly ray spades gene written 16 months ago by gustavojorge080 • 0
0
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1
answer
383
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1
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what is Kmer coverage
genome assembly sequence metagenome spades written 16 months ago by vm.higareda • 20 • updated 16 months ago by Buffo • 1.8k
0
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0
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261
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0
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Does SPAdes assembler lose singlets?
assembly spades genomes written 16 months ago by stacy734 • 40
3
votes
1
answer
1.3k
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1
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SPAdes error during assembly, error code -6
software error assembly spades written 17 months ago by marongiu.luigi • 520 • updated 17 months ago by h.mon ♦ 32k
0
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0
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734
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0
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SPAdes error code -6
assembly metagenomics spades written 18 months ago by Lina F • 200
3
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1
answer
1.9k
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1
answer
Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
assembly spades quast contigs written 19 months ago by bioinforesearchquestions • 280 • updated 19 months ago by h.mon ♦ 32k
5
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1
answer
876
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1
answer
Kmer selection for bacterial WGS denovo assembly using SPAdes or SOAP-denovo
wgs assembly spades soap-denovo bacterial written 19 months ago by bioinforesearchquestions • 280 • updated 19 months ago by h.mon ♦ 32k
0
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0
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561
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0
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Assembly finished but output contig file is empty
assembly spades sequencing written 20 months ago by tchow5 • 0
0
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0
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808
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0
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 20 months ago by gustavo.teixeira • 0 • updated 20 months ago by ATpoint ♦ 44k
9
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3
answers
4.6k
views
8 follow
3
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 3.0 years ago by fhsantanna • 490 • updated 22 months ago by bhclement • 0
4
votes
1
answer
1.4k
views
1
answer
Increase memory limit in SPAdes-3.6.1
hybrid assembly next-gen alignment spades written 22 months ago by ashaneev07 • 20 • updated 22 months ago by Buffo • 1.8k
5
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1
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1.6k
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1
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How to give merged reads as input in spades
merged assembly spades de novo written 2.0 years ago by manjumoorthy95 • 20 • updated 24 months ago by Joseph Hughes • 2.9k
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