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<prev • 55 results • page 1 of 2 • next >
5
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4
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3.9k
views
4
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How do I access genome coverage using SPADES?
genome spades coverage myposts written 3.3 years ago by fhsantanna • 410 • updated 6 hours ago by DK • 70
3
votes
0
answers
148
views
5 follow
0
answers
looping a list of trimed fasta files to run spades assembler
assembly loop sequence loop a list spades written 2 days ago by m.al_amiri • 0
1
vote
0
answers
55
views
0
answers
Comparing SPAdes assemblies to each other?
spades denovo written 11 days ago by laurenkleine18 • 10
2
votes
0
answers
100
views
0
answers
Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 13 days ago by jeetsahu • 0
3
votes
1
answer
202
views
1
answer
Perl script review
perl spades written 20 days ago by Mostafa Mahmoud • 0 • updated 19 days ago by Michael Dondrup ♦ 45k
5
votes
0
answers
254
views
0
answers
SPAdes output with assembling warning
sequence-reads spades assembling iontorrent written 5 weeks ago by DK • 70
1
vote
1
answer
214
views
1
answer
de novo assembly of circular plasmid
de novo assembly spades plasmids written 7 weeks ago by kspata • 40 • updated 7 weeks ago by piet • 1.6k
0
votes
0
answers
247
views
0
answers
Assembly NGS Reads from D-LOOP Wolf
assembly spades alignment written 3 months ago by netsam • 10
0
votes
0
answers
159
views
0
answers
Does rnaSPAdes represent a convenient assembler for RNA viruses?
assembly spades rna virus kmer written 3 months ago by Guillermo D. Huerta • 10
1
vote
0
answers
245
views
0
answers
solution for SPades to assemble genome with low quality data
assembly ion-torrent spades single-end written 4 months ago by StudentBio • 0 • updated 4 months ago by Sej Modha ♦ 3.8k
11
votes
2
answers
3.2k
views
2
answers
Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
de novo assembly bacterial species spades written 3.1 years ago by ALchEmiXt • 1.9k • updated 4 months ago by Biostar ♦♦ 20
8
votes
2
answers
853
views
2
answers
SPAdes assembler k-mer > default 127 possible?
k-mer spades genome assembly written 14 months ago by Anand Rao • 160 • updated 6 months ago by ikangkim • 30
4
votes
1
answer
442
views
1
answer
How to identify single-copy genes across multiple complete genomes?
target capture spades hybpiper single-copy genes written 6 months ago by Santiago Montero-Mendieta • 100
3
votes
0
answers
345
views
5 follow
0
answers
Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
assembly 16s rrna spades reago written 6 months ago by dark.lord • 0
0
votes
0
answers
432
views
0
answers
SPAdes assembler-Error code -6
assembler spades error error -6 written 6 months ago by Menia_gavr • 0
1
vote
1
answer
1.3k
views
1
answer
SPAdes assembler-Error code 255
de novo assembly assembly spades error 255 written 6 months ago by Menia_gavr • 0
3
votes
1
answer
513
views
1
answer
The --contig option for SPAdes
assembly contig spades written 7 months ago by 934963534 • 10 • updated 7 months ago by dark.lord • 0
1
vote
0
answers
325
views
0
answers
Paralog detection after target capture - HybPiper
hybpiper exonerate spades target capture paralogy written 7 months ago by Santiago Montero-Mendieta • 100
1
vote
1
answer
303
views
1
answer
What do Ns represent in a SPAdes assembly from single-end reads?
assembly spades written 8 months ago by kcamnairb • 40 • updated 8 months ago by lieven.sterck • 3.1k
8
votes
3
answers
1.4k
views
7 follow
3
answers
Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 10 months ago by fhsantanna • 410
0
votes
0
answers
332
views
0
answers
IS-rich bacterial genome assembly
assembly spades is prokaryote written 12 months ago by Yury_M • 0
3
votes
0
answers
795
views
0
answers
Using SPAdes for assembling mitochondrial and viral genomes
genome assembly spades mitochondrial written 12 months ago by ropolocan • 460
0
votes
1
answer
727
views
5 follow
1
answer
Doubt about specifying options in SPAdes
assembly metagenomics spades written 13 months ago by inaciogmedeiros • 10
0
votes
0
answers
682
views
0
answers
Illumina paired end read header difference- SPAdes bwa run ERROR
software error assembly spades genome written 14 months ago by ranjeet_maurya • 0 • updated 14 months ago by genomax ♦ 58k
2
votes
0
answers
943
views
5 follow
0
answers
Tips for increasing metaSPAdes assembly speed for 7 billion reads?
reads assembly metaspades spades metagenome written 15 months ago by anin.gregory • 80
2
votes
0
answers
2.4k
views
0
answers
SPAdes is running out of memory
hybrid spades memory assembly fungi written 15 months ago by Lina F • 150 • updated 15 months ago by h.mon ♦ 21k
1
vote
0
answers
1.2k
views
0
answers
MetaSpades can't access memory? Crashes when requesting 45 Gigs on a 128 Gig RHEL6 machine
metagenomics spades jemalloc malloc metaspades.py written 17 months ago by jnowacki • 60
8
votes
1
answer
1.5k
views
6 follow
1
answer
SPAdes: <jemalloc>: Error in malloc(): out of memory
de novo assembly spades bacterial genome written 18 months ago by Paul • 60 • updated 18 months ago by h.mon ♦ 21k
0
votes
1
answer
793
views
1
answer
Difficulty using SPAdes - Error relating to access and specificity
de novo assembler spades help software written 20 months ago by gfrsims • 0 • updated 20 months ago by h.mon ♦ 21k
9
votes
3
answers
3.1k
views
6 follow
3
answers
Denovo assembly SPAdes ERROR K-mer Counting: too many k-mers to fit into available memory limit
spades denovo assembly written 21 months ago by ambi1999 • 30 • updated 21 months ago by genomax ♦ 58k
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