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3
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309
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Load data from NCBI .gpff files into a SQL database. Looking for a quicker way.
biopython sql bioseqdatabase written 5 months ago by azotov • 10
0
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0
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307
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0
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KEGG / REACTOME to SQLite ?
sqlite reactome kegg sql written 5 months ago by G. D. • 0
9
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1
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340
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7 follow
1
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Data Mining from my Genomic Coordinates
vcf ngs coordinates database sql written 6 months ago by Paul • 1.0k • updated 6 months ago by Kevin Blighe ♦ 16k
0
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1
answer
427
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1
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Exporting fasta from SQL
fasta format sql written 8 months ago by stacy734 • 20
4
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1
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490
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1
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Error: Missign value where TRUE/FALSE needed when using rbind in R
R orthomcl sql written 9 months ago by AsoInfo • 220 • updated 9 months ago by h.mon ♦ 13k
5
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1
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849
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1
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show vcf data in a table
vcf csv nosql sql written 11 months ago by sarah.k • 0 • updated 11 months ago by Petr Ponomarenko • 2.5k
0
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1
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699
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1
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How to convert .vcf files into .csv?
vcf python csv vcftools sql written 12 months ago by feng9oly • 0 • updated 12 months ago by Pierre Lindenbaum ♦ 106k
0
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0
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621
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Job: Senior Software Developer - community-annotation web interfaces, Wellcome Trust Sanger Institute, Cambridge, UK
job webapollo javascript sql written 12 months ago by Recruit • 210 • updated 12 months ago by genomax ♦ 46k
1
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2
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578
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Is there any robust way to convert VCFs to SQL (for easier comparisons) in R or Ruby, Java and Python?
vcf wgs ngs sql written 20 months ago by valentina_stepanenko • 0 • updated 12 months ago by brian.repko • 20
0
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323
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How to match the sample type for serial of SRX ID
sql srx written 15 months ago by Shicheng Guo • 4.7k
1
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819
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Job: Senior Statistical Geneticist - University of Chicago, Chicago, IL, USA
statistical genetics java sql job written 17 months ago by Danielle • 260
1
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1
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816
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1
answer
TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 18 months ago by ando.kelli • 30
0
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0
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665
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Job: Senior Bioinformatics Scientist - Affymetrix - Santa Clara, CA US
R statistical genetics job sql python written 18 months ago by andyd • 20 • updated 18 months ago by Ram ♦ 14k
0
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1
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688
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1
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orthomclpairs table lock size error
orthomcl clustering sql written 18 months ago by spaul8505 • 10 • updated 18 months ago by genomax ♦ 46k
1
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1
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554
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1
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gemini query error
gemini wgs sql error query written 19 months ago by krismopolitan • 0
0
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0
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443
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0
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Where to download vcf2sqlite tool and are there any similar available somewhere?
vcf sql written 20 months ago by valentina_stepanenko • 0
6
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2
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1.0k
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2
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what sql schema to store a vcf file ?
vcf annotation variant sql written 21 months ago by sacha • 1.1k
4
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1
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710
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1
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How to properly install ViroBLAST Standalone for Mac OS X 10.11
blast sequence viroblast php sql written 21 months ago by cllezark • 20
0
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0
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606
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0
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1000 genomes frequencies from Ensembl SQL?
ensembl sql 1000 genomes written 21 months ago by mamillerpa • 0
0
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0
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826
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0
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Job: Sr. Genomic Database Engineer - St. Jude Children's Research Hospital
oracle job sql written 2.0 years ago by caryn.cloer • 0
0
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0
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461
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0
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Ensembl homo_sapiens_core_84_38: no more MIM_MORBID linked to genes?
ensembl database sql mim_morbid written 2.0 years ago by rawi • 0
1
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1
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939
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1
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Should I use SQL to store my BLAST results ?
blast sql written 2.4 years ago by moranr • 240 • updated 2.4 years ago by Pierre Lindenbaum ♦ 106k
9
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1
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3.3k
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1
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Exome Aggregation Consortium (ExAC) database ?
vcf database exac sql variants written 3.2 years ago by Pierre Lindenbaum ♦ 106k • updated 3.2 years ago by Brad Chapman ♦ 9.2k
8
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2
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2.3k
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2
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why aren't relational DB's used more for genomic data?
data database sql written 3.2 years ago by brentp ♦ 22k • updated 3.2 years ago by Mitch Skinner • 650
7
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3
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2.9k
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3
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How to design an SQL relational database for gene expression data?
relational database design mysql sql written 3.2 years ago by enricoferrero • 740 • updated 3.2 years ago by ilya.shamovsky • 20
4
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2
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879
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2
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Storing genomes locally
python genomes sql databases written 3.3 years ago by moranr • 240 • updated 3.3 years ago by Devon Ryan ♦ 78k
0
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885
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Job: Bioinformatics postdoc at NIBRT, Dublin
python java job R glycobiology sql written 3.5 years ago by colin986 • 40
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