Showing: srareset
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7
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1
answer
83
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1
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46
votes
4
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20k
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29 follow
4
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How To Download All Sra Samples At Once ?
geo sra download written 4.3 years ago by biorepine1.4k • updated 6 days ago by Federico Giorgi390
2
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1
answer
118
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1
answer
5
votes
1
answer
134
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1
answer
Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 4 weeks ago by Mitra0 • updated 4 weeks ago by ATpoint4.4k
1
vote
2
answers
117
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2
answers
using NCBI SRA data for prinseq
software error sra fastq sequence prinseq written 6 weeks ago by mforthman30 • updated 6 weeks ago by swbarnes23.6k
4
votes
1
answer
8.8k
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1
answer
Issue With Sra To Fastq Conversion
sra fastq written 6.0 years ago by Arpssss40 • updated 11 weeks ago by Biostar ♦♦ 20
0
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0
answers
231
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0
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Filter low quality tiles from fastq files downloaded from SRA
quality filtering fastq sra written 4 months ago by dolevrahat10 • updated 12 weeks ago by Biostar ♦♦ 20
2
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1
answer
170
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1
answer
SRAToolkit - Delete cache after each sam-dump run
sra sequence sam-dump sratoolkit written 3 months ago by gregoryhuang200510 • updated 3 months ago by genomax49k
0
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0
answers
188
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0
answers
6
votes
2
answers
1.9k
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2
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Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 15 months ago by predeus560
24
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3
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5.6k
views
12 follow
3
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Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
sra fastq written 4.4 years ago by Devon Ryan81k • updated 4 months ago by ATpoint4.4k
7
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4
answers
1.2k
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11 follow
4
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Download SAM/BAM files from SRA takes ages!!!
sra bam written 11 months ago by Alejandro Jimenez Sanchez120 • updated 4 months ago by sutturka120
9
votes
4
answers
9.5k
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6 follow
4
answers
Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sra samtools sam chip-seq written 4.4 years ago by bede.portz470 • updated 4 months ago by Biostar ♦♦ 20
169
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8
answers
65k
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151 follow
8
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 3.8 years ago by Obi Griffith16k • updated 4 months ago by simplitia20
4
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1
answer
307
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1
answer
Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 4 months ago by xarielle0 • updated 4 months ago by Istvan Albert ♦♦ 77k
1
vote
1
answer
351
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1
answer
BLAST stranded SRA for plus or minus?
sra rna-seq blast written 6 months ago by Adria10 • updated 5 months ago by h.mon15k
0
votes
0
answers
153
views
0
answers
1
vote
0
answers
766
views
0
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Getting multiple *.sra files from NCBI using a list
ncbi sra written 11 months ago by chrys40 • updated 5 months ago by Biostar ♦♦ 20
1
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3
answers
434
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5 follow
3
answers
problem in fastq-dump of SRA file
sra fastq-dump written 5 months ago by majeedaasim20 • updated 5 months ago by jomo018330
3
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0
answers
941
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0
answers
20
votes
4
answers
3.9k
views
10 follow
4
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Aligning paired end fastq files dumped from SRA
sra fastq bwa mem paired written 3.6 years ago by Zev.Kronenberg11k • updated 6 months ago by seelament0
2
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1
answer
237
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1
answer
3
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1
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426
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1
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Forum: Designing RNA-seq data analysis pipeline
sra ngs forum rna-seq written 7 months ago by ag1805x80 • updated 7 months ago by Devon Ryan81k
2
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0
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348
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0
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SRA submission problem
ncbi sra aspera connect written 7 months ago by kk.mahsa60
4
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2
answers
387
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2
answers
SRA data sets and runs
rnaseq sra written 7 months ago by MAPK1.2k
1
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1
answer
381
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1
answer
Problem in processing SRA file from NCBI
ncbi sra written 7 months ago by majeedaasim20 • updated 7 months ago by Sean Davis24k
1
vote
0
answers
378
views
0
answers
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
ncbi sra written 7 months ago by kk.mahsa60 • updated 7 months ago by Ram15k
2
votes
1
answer
401
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1
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combine two fastq file (paired end) to submit in NCBI
sra fastq written 7 months ago by kk.mahsa60 • updated 7 months ago by genomax49k
0
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1
answer
439
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1
answer
1
vote
1
answer
362
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1
answer
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