Showing: srareset
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118
votes
8
answers
38k
views
106 follow
8
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 2.5 years ago by Obi Griffith14k • updated 9 days ago by al-ash0
4
votes
2
answers
93
views
2
answers
Downloading data from Short Read Archive
sra short read archive written 14 days ago by cristian20 • updated 14 days ago by EagleEye3.2k
17
votes
3
answers
2.4k
views
5 follow
3
answers
Aligning paired end fastq files dumped from SRA
sra fastq bwa mem paired written 2.3 years ago by Zev.Kronenberg10k • updated 19 days ago by Christian2.4k
6
votes
2
answers
325
views
5 follow
2
answers
Entrez API returns results different from main search?
python entrez sra written 19 days ago by Philipp Bayer3.9k • updated 19 days ago by DCGenomics270
0
votes
0
answers
146
views
0
answers
blastn_vdb "- Error opening the following db(s): "
wgs sra-toolkit blastn_vdb blast sra written 4 weeks ago by musta123410 • updated 4 weeks ago by Ram11k
0
votes
1
answer
191
views
1
answer
4
votes
3
answers
1.7k
views
3
answers
7
votes
4
answers
1.6k
views
5 follow
4
answers
How can I find SRA MD5 checksums for FASTQ files?
checksum sra md5 written 20 months ago by rivanov30 • updated 5 weeks ago by genomax222k
6
votes
1
answer
202
views
1
answer
2
votes
3
answers
298
views
3
answers
Error while downloading data using SRA toolkit
sra download sra-toolkit error chip-seq written 7 weeks ago by bhardwaj19910 • updated 7 weeks ago by Chunjie Liu170
0
votes
0
answers
144
views
0
answers
EBI SRA FTP is not working
ebi sra written 7 weeks ago by BAGeno0
1
vote
0
answers
252
views
0
answers
Comparison of TCGA and SRA data
sra diffrential expression tcga rna-seq written 3 months ago by swatikrishna11310 • updated 8 weeks ago by Biostar ♦♦ 10
2
votes
0
answers
183
views
0
answers
1
vote
0
answers
215
views
0
answers
0
votes
0
answers
169
views
0
answers
Building a matrix of Profile Expression
geo R sra written 4 months ago by grecoandreauni0 • updated 9 weeks ago by Biostar ♦♦ 10
0
votes
0
answers
176
views
0
answers
1
vote
1
answer
188
views
1
answer
5
votes
2
answers
447
views
2
answers
fastq dump error
sra sra toolkit fastq-dump written 11 weeks ago by Satya670 • updated 11 weeks ago by piet1.3k
6
votes
6
answers
7.8k
views
10 follow
6
answers
How To Fix Fastq File From Sra When Fastq-Dump Split At Wrong Position
sra fastq paired conversion written 5.4 years ago by Aaron H170 • updated 12 weeks ago by A.Machado0
10
votes
3
answers
399
views
3
answers
How to split paired end SRA file into 2 correct fastq files
sra fastq next-gen written 3 months ago by thustar30 • updated 3 months ago by Antonio R. Franco3.2k
1
vote
1
answer
256
views
1
answer
Uniting SRA Data into a single file
sra fastq R written 3 months ago by grecoandreauni0 • updated 3 months ago by Santosh Anand500
3
votes
1
answer
363
views
1
answer
0
votes
0
answers
275
views
0
answers
Problem with web Blast SRA database
python api blast sra written 5 months ago by QVH10 • updated 4 months ago by Biostar ♦♦ 10
1
vote
1
answer
192
views
1
answer
downloading many sra files for single cell analysis
sra written 4 months ago by bioinfgeekgirl0 • updated 4 months ago by Satya670
0
votes
1
answer
264
views
1
answer
Download fastq files from SRA database using biosample identifier
sra fastq written 4 months ago by Bade20 • updated 4 months ago by Jenez450
0
votes
0
answers
217
views
0
answers
RNASEQ .bam of various type Tumours
sra cancer written 5 months ago by always_learning710 • updated 5 months ago by Biostar ♦♦ 10
0
votes
0
answers
168
views
0
answers
0
votes
2
answers
257
views
2
answers
fastq-dump.2.4.2 failed *.sra
sra tool written 5 months ago by yiruic0
1
vote
1
answer
609
views
1
answer
0
votes
2
answers
337
views
2
answers
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