Showing: srareset
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19
votes
4
answers
3.4k
views
10 follow
4
answers
Aligning paired end fastq files dumped from SRA
sra fastq bwa mem paired written 3.1 years ago by Zev.Kronenberg11k • updated 2 days ago by seelament0
2
votes
1
answer
93
views
1
answer
0
votes
0
answers
103
views
0
answers
3
votes
1
answer
193
views
1
answer
Forum: Designing RNA-seq data analysis pipeline
sra ngs forum rna-seq written 4 weeks ago by ag1805x30 • updated 4 weeks ago by Devon Ryan74k
2
votes
0
answers
158
views
0
answers
SRA submission problem
ncbi sra aspera connect written 5 weeks ago by kk.mahsa50
4
votes
2
answers
163
views
2
answers
SRA data sets and runs
rnaseq sra written 5 weeks ago by MAPK1.1k
1
vote
1
answer
162
views
1
answer
Problem in processing SRA file from NCBI
ncbi sra written 5 weeks ago by majeedaasim20 • updated 5 weeks ago by Sean Davis24k
1
vote
0
answers
166
views
0
answers
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
ncbi sra written 6 weeks ago by kk.mahsa50 • updated 6 weeks ago by Ram12k
2
votes
1
answer
158
views
1
answer
combine two fastq file (paired end) to submit in NCBI
sra fastq written 6 weeks ago by kk.mahsa50 • updated 6 weeks ago by genomax39k
0
votes
1
answer
201
views
1
answer
1
vote
1
answer
202
views
1
answer
9
votes
4
answers
8.8k
views
6 follow
4
answers
Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sra samtools sam chip-seq written 3.9 years ago by bede.portz450 • updated 9 weeks ago by genomax39k
6
votes
0
answers
607
views
5 follow
0
answers
Is there a way to download FASTq files from SRR IDs?
sra eutility fastq written 4 months ago by Paul50 • updated 10 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
194
views
0
answers
Where can I find DNase-seq assays of cell line MCF-10A?
sra dnase sequence ngs dnase-seq written 11 weeks ago by vue0 • updated 11 weeks ago by Kevin Blighe9.2k
2
votes
0
answers
217
views
0
answers
3
votes
2
answers
692
views
2
answers
fastq-dump timeout exhausted error
sra written 7 months ago by bxia120 • updated 12 weeks ago by samesense40
0
votes
0
answers
176
views
0
answers
0
votes
1
answer
254
views
1
answer
automated SRA annotaion/Accession List
ncbi sra run selector rna-seq written 7 months ago by cakesebastian0 • updated 3 months ago by hh.earlydays0
1
vote
1
answer
255
views
1
answer
SRA record can not be found!
sra written 4 months ago by Zhizhong230 • updated 4 months ago by Philipp Bayer5.0k
2
votes
2
answers
295
views
2
answers
0
votes
1
answer
387
views
1
answer
9
votes
3
answers
4.9k
views
3
answers
Insert Length Vs Nominal Length For Paired-End Data
sra paired written 6.2 years ago by Daniel Standage3.7k • updated 4 months ago by devbt1510
1
vote
2
answers
329
views
2
answers
4
votes
3
answers
507
views
9 follow
3
answers
Download SAM/BAM files from SRA takes ages!!!
sra bam written 4 months ago by Alejandro Jimenez Sanchez100 • updated 4 months ago by ghostforever.shi20
9
votes
1
answer
921
views
7 follow
1
answer
Tutorial: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
ncbi sra tutorial biosample bioproject written 9 months ago by CandiceChuDVM1.4k • updated 5 months ago by Lucila10
4
votes
1
answer
324
views
6 follow
1
answer
Download SRA data via SRA Toolkit.
sra written 5 months ago by XBria30 • updated 5 months ago by James Ashmore2.1k
2
votes
1
answer
244
views
1
answer
1
vote
1
answer
344
views
5 follow
1
answer
How to download raw data in batch from NCBI based on Series Accession number or Platform ID
sra written 7 months ago by biolab970 • updated 5 months ago by Istvan Albert ♦♦ 75k
2
votes
1
answer
293
views
1
answer
How to download SRA fastq filese
sra command line written 5 months ago by 1103005530 • updated 5 months ago by Pierre Lindenbaum102k
1
vote
0
answers
334
views
0
answers
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