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<prev • 233 results • page 1 of 8 • next >
27
votes
4
answers
8.1k
views
14 follow
4
answers
Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
sra fastq written 5.4 years ago by Devon Ryan ♦ 90k • updated 11 days ago by sschmeier • 80
2
votes
0
answers
82
views
0
answers
How do I find out the adaptor sequences for SRA data?
sra adaptor written 13 days ago by MAPK • 1.4k
7
votes
2
answers
154
views
2
answers
What is the difference between SRR, DRR, ERR ?
sra rna-seq written 21 days ago by Helen • 30 • updated 19 days ago by Malka • 20
2
votes
1
answer
88
views
6 follow
1
answer
How to find correspondence between GSM and all SRA identifiers (SRR DRR ERR) ?
srr sra geo rna-seq written 19 days ago by Helen • 30 • updated 19 days ago by predeus • 1.1k
11
votes
2
answers
3.6k
views
8 follow
2
answers
Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 2.2 years ago by predeus • 1.1k • updated 19 days ago by Helen • 30
1
vote
0
answers
84
views
0
answers
Latest https for SRAmetadb.sqlite db
ncbi sra srametadb written 4 weeks ago by joe • 0
4
votes
0
answers
185
views
0
answers
Downloading paired end fastq from SRA
singlecell sra rna-seq written 7 weeks ago by t.t • 10 • updated 7 weeks ago by ATpoint ♦ 17k
0
votes
1
answer
193
views
1
answer
adding pair info to fastq files, for BWA
illumina bwa sra written 8 weeks ago by sullis02 • 0
2
votes
1
answer
207
views
1
answer
Download data from GEO/SRA using link
geo sra fastq written 9 weeks ago by rioualen • 360 • updated 9 weeks ago by genomax ♦ 68k
0
votes
1
answer
138
views
1
answer
Uploading to SRA: multiple files per BioSample
ncbi sra next-gen written 12 weeks ago by jo.wolfe • 0 • updated 12 weeks ago by swbarnes2 ♦ 5.8k
3
votes
1
answer
284
views
1
answer
SRA: fastq-dump gives different number of sequences
sra sequence written 7 months ago by jeetsahu • 10 • updated 3 months ago by Biostar ♦♦ 20
7
votes
1
answer
193
views
1
answer
SRA from NCBI?
ncbi sra fastq rna-seq written 3 months ago by star • 150
0
votes
0
answers
150
views
0
answers
How to select high quality RNA-seq datasets from SRA database?
sra rna-seq written 3 months ago by harrypotterandsbt • 10
2
votes
2
answers
263
views
2
answers
Finding Reads from a DNA Virus
sra virus detection rna-seq written 3 months ago by nickeener • 0 • updated 3 months ago by darren.obbard • 20
22
votes
0
answers
508
views
10 follow
0
answers
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 3 months ago by Phil Ewels • 400
4
votes
1
answer
395
views
1
answer
What is the fastest way to download all SRA files of a SRA Study?
ncbi sra sequencing rna-seq download written 3 months ago by lokdeep17 • 0 • updated 3 months ago by ATpoint ♦ 17k
0
votes
0
answers
237
views
0
answers
SRA submission Error: Command based
sra rna-seq written 5 months ago by suren04 • 0 • updated 4 months ago by Biostar ♦♦ 20
1
vote
0
answers
168
views
0
answers
Looking for Recommendations: whole Adult male Danio rerio RNAseq data
sra daniorerio mapping rna-seq written 4 months ago by jaqx008 • 40
1
vote
1
answer
643
views
1
answer
SRA record can not be found!
sra written 22 months ago by Zhizhong • 240 • updated 4 months ago by Biostar ♦♦ 20
8
votes
1
answer
481
views
1
answer
why fastq-dump doesn`t work?
sra prefetch fastq-dump written 4 months ago by star • 150 • updated 4 months ago by ATpoint ♦ 17k
15
votes
2
answers
543
views
8 follow
2
answers
Bulk download of entire BioProject SRA
ncbi sra sratoolkit entrez utilities bioproject written 4 months ago by Anand Rao • 210 • updated 4 months ago by arup • 1.4k
0
votes
0
answers
350
views
0
answers
Windows batch cmd for fastq-dump
sra windows fastq-dump written 7 months ago by rrbutleriii • 60 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
249
views
0
answers
SRAdb / SRA difference in overall sample counts
sra sradb written 5 months ago by mayars169 • 20
0
votes
0
answers
494
views
5 follow
0
answers
SRA submission Error
sra written 5 months ago by suren04 • 0
1
vote
2
answers
1.6k
views
2
answers
Extracting specific metadata from SRA runs
ncbi sra sradb genomics metadata written 2.1 years ago by Gon • 10 • updated 6 months ago by Rob • 0
4
votes
2
answers
563
views
2
answers
Does .sra.cache file means failed download?
sra written 6 months ago by Phoenix Mu • 10 • updated 6 months ago by Renesh • 1.6k
203
votes
9
answers
85k
views
182 follow
9
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 4.8 years ago by Obi Griffith ♦ 17k • updated 6 months ago by Renesh • 1.6k
0
votes
1
answer
561
views
1
answer
How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 6 months ago by beneopp • 0 • updated 6 months ago by Phil Ewels • 400
2
votes
2
answers
419
views
2
answers
Obtaining GSM numbers from SRA ids
sra rna-seq written 9 months ago by Dirk • 80 • updated 6 months ago by Biostar ♦♦ 20
4
votes
1
answer
494
views
6 follow
1
answer
Tutorial: NCBI submissions: SRA and TSA
ncbi sra tsa tutorial rna-seq written 6 months ago by saraoppenheim • 40
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