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1
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1
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287
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1
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How do I run a .fastq single-end file in rsem-calculate-expression?
rsem-calculate-expression sra ribeiro rna-seq rsem written 7 months ago by matheusribalves • 0 • updated 1 day ago by svp • 60
2
votes
1
answer
207
views
1
answer
Downloading FASTQ with aspera
sra written 16 days ago by dagurim • 10 • updated 6 days ago by ATpoint ♦ 31k
0
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1
answer
143
views
1
answer
ERROR: "ascp: Failed to open TCP connection for SSH, exiting."
sra ascp aspera connect ena written 7 days ago by DEEP • 0
0
votes
0
answers
79
views
0
answers
SRA run data access
ncbi sra next-gen sequence illumina written 8 days ago by DEEP • 0
6
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3
answers
194
views
3
answers
Downloading SRA data
reads sra metagenomics written 19 days ago by anabaena • 0 • updated 19 days ago by liorglic • 280
0
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0
answers
72
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0
answers
Local non-kart file has 0 unresolved dependencies?
sratoolkit rna-seq sra written 21 days ago by lin97868 • 0
1
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1
answer
76
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1
answer
Cancer exome sequences
sra sequence cancer written 4 weeks ago by phoenix.sum13 • 0 • updated 4 weeks ago by Kevin Blighe ♦ 56k
0
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0
answers
119
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0
answers
A problem with download SRA using SRA toolkit
ncbi sra sra toolkit configuration written 4 weeks ago by reza • 220
3
votes
1
answer
132
views
1
answer
Remote blast of SRA database
sra blast written 7 weeks ago by emre.cto • 0 • updated 7 weeks ago by Brice Sarver • 3.5k
3
votes
1
answer
111
views
1
answer
Retrieve "Abstract" of SRP accession from SRA
sra written 10 weeks ago by grant.hovhannisyan • 1.9k • updated 10 weeks ago by genomax ♦ 80k
0
votes
0
answers
143
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0
answers
Barcode and Linker for QIIME2 analysis
sra metagenome qiime2 metadata barcode written 10 weeks ago by karthikqk95 • 0
0
votes
1
answer
136
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1
answer
efetch sra suddenly stopping
ncbi sra fastq esearch efetch written 12 weeks ago by barry • 0 • updated 12 weeks ago by ATpoint ♦ 31k
0
votes
0
answers
121
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0
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Hisat2 --sra-acc option (redirect sra file to a desired directory)
ncbi sra hisat2 written 3 months ago by Darill • 40
225
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8
answers
105k
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198 follow
8
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.6 years ago by Obi Griffith ♦ 18k • updated 3 months ago by Darill • 40
1
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1
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1.7k
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5 follow
1
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How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 15 months ago by beneopp • 0 • updated 3 months ago by dgpiury • 0
7
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1
answer
147
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1
answer
Is there a tool to extract organism names from SRA accession IDs?
taxa sra ncbi written 3 months ago by nikthoma • 0
12
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1
answer
212
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1
answer
There is some way to split a FastQ file by chromosome?
fasta sra fastq chromosome written 3 months ago by calebe_campos26 • 0 • updated 3 months ago by swbarnes2 ♦ 7.5k
2
votes
1
answer
121
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1
answer
How can I query NCBI SRA for purpose of strain typing/profiling?
sra strain typing written 4 months ago by gatheringdusthere • 20
5
votes
1
answer
201
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1
answer
Parsing an ExpressionSet for all SRA addresses
sra parse expressionset rna-seq R written 5 months ago by kmyers2 • 40 • updated 5 months ago by Amar • 640
0
votes
2
answers
212
views
5 follow
2
answers
Do all samples in SRA have a corresponding sample in BioSample?
sra sequencing written 5 months ago by bimlay2 • 30 • updated 5 months ago by JJ • 500
32
votes
0
answers
2.3k
views
18 follow
0
answers
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 13 months ago by Phil Ewels • 510 • updated 5 months ago by psschlogl • 30
1
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1
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217
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1
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Downloading RNA-Seq Dataset
sra chrome rna-seq windows10 written 5 months ago by naseerkhan861 • 0
4
votes
0
answers
279
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0
answers
Forum: publicly available data
geo sra forum arrayexpress written 5 months ago by Konstantinos Yeles • 100 • updated 5 months ago by h.mon ♦ 29k
0
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0
answers
195
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0
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Get original format information from SRA metadata
sra sqlite3 sradb pysradb metadata written 5 months ago by mariafirulevabio • 40
0
votes
0
answers
167
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0
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Get single-cell technology used for certain sample
geo metadata gsm scrnaseq sra written 5 months ago by mariafirulevabio • 40
9
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0
answers
1.1k
views
7 follow
0
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Downloading paired end fastq from SRA
singlecell sra rna-seq written 11 months ago by t.t • 10 • updated 6 months ago by Roman Hillje • 40
3
votes
1
answer
184
views
1
answer
Confusion with 2nd Read pair SRA download
sra fastq paired reads written 6 months ago by jaqx008 • 70
2
votes
1
answer
221
views
1
answer
issue with fastQ reads download from NCBI-SRA database?
ncbi sra fastq ngs sequencing written 6 months ago by Dineshkumar K • 30 • updated 6 months ago by Researcher • 50
4
votes
0
answers
561
views
0
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How do I find out the adaptor sequences for SRA data?
sra adaptor written 10 months ago by MAPK • 1.5k • updated 6 months ago by hermidalc • 0
11
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1
answer
900
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8 follow
1
answer
NCBI SRA AWS AMI
ncbi sra aws s3 written 7 months ago by joe • 140 • updated 6 months ago by hermidalc • 0
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