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4
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1
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74
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1
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What is the fastest way to download all SRA files of a SRA Study?
ncbi sra sequencing rna-seq download written 16 hours ago by lokdeep17 • 0 • updated 16 hours ago by ATpoint ♦ 13k
0
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0
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117
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0
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SRA submission Error: Command based
sra rna-seq written 6 weeks ago by suren04 • 0 • updated 7 days ago by Biostar ♦♦ 20
1
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0
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103
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0
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Looking for Recommendations: whole Adult male Danio rerio RNAseq data
sra daniorerio mapping rna-seq written 9 days ago by jaqx008 • 40
1
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1
answer
552
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1
answer
SRA record can not be found!
sra written 18 months ago by Zhizhong • 230 • updated 18 days ago by Biostar ♦♦ 20
8
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1
answer
246
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1
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why fastq-dump doesn`t work?
sra prefetch fastq-dump written 20 days ago by star • 120 • updated 20 days ago by ATpoint ♦ 13k
12
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2
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213
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8 follow
2
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Bulk download of entire BioProject SRA
ncbi sra sratoolkit entrez utilities bioproject written 4 weeks ago by Anand Rao • 210 • updated 28 days ago by arup • 850
0
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0
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238
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0
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Windows batch cmd for fastq-dump
sra windows fastq-dump written 3 months ago by rrbutleriii • 50 • updated 4 weeks ago by Biostar ♦♦ 20
0
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0
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121
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0
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SRAdb / SRA difference in overall sample counts
sra sradb written 6 weeks ago by mayars169 • 20
0
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0
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197
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5 follow
0
answers
SRA submission Error
sra written 6 weeks ago by suren04 • 0
1
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2
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1.3k
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2
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Extracting specific metadata from SRA runs
ncbi sra sradb genomics metadata written 21 months ago by Gon • 10 • updated 9 weeks ago by Rob • 0
4
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2
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192
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2
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Does .sra.cache file means failed download?
sra written 10 weeks ago by Phoenix Mu • 0 • updated 10 weeks ago by Renesh • 1.5k
194
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9
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78k
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174 follow
9
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 4.5 years ago by Obi Griffith ♦ 17k • updated 10 weeks ago by Renesh • 1.5k
0
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1
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233
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1
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How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 10 weeks ago by beneopp • 0 • updated 10 weeks ago by Phil Ewels • 150
2
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2
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254
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2
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Obtaining GSM numbers from SRA ids
sra rna-seq written 5 months ago by Dirk • 60 • updated 10 weeks ago by Biostar ♦♦ 20
3
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1
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285
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1
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Tutorial: NCBI submissions: SRA and TSA
ncbi sra tsa tutorial rna-seq written 3 months ago by saraoppenheim • 30
1
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0
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218
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0
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SRA Database: Samples with Multiple Sequencing Runs Per Sample
replicates sra technical replicates written 3 months ago by vlrieg • 10
2
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1
answer
207
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1
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is there a way to get SRA info (Paired Library, Sample id, Seq Tech... etc) using a list of SRA IDS?
sra awk written 3 months ago by S AR • 50
1
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1
answer
193
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1
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SRA archive metadata
ncbi sra sra-toolkit written 3 months ago by tim.ivanov.92 • 10 • updated 3 months ago by vkkodali • 960
2
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1
answer
148
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1
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SRA: fastq-dump gives different number of sequences
sra sequence written 3 months ago by jeetsahu • 0 • updated 3 months ago by ATpoint ♦ 13k
2
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1
answer
207
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1
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pathogenic bacteria in the SRA database
ncbi sra bacteria pathogen written 4 months ago by shira.zaltsman • 10 • updated 3 months ago by vkkodali • 960
2
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1
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199
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1
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SRA data reuse policy
data-sharing ethics sra written 3 months ago by Raygozak • 1.3k
1
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0
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198
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0
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HISAT2 SRR error
srr sra alignment rna-seq hisat2 written 3 months ago by NAVID.BAVI • 0 • updated 3 months ago by genomax ♦ 62k
9
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5
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2.3k
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11 follow
5
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Download SAM/BAM files from SRA takes ages!!!
sra bam written 19 months ago by Alejandro Jimenez Sanchez • 120 • updated 3 months ago by shengwei • 30
2
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0
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216
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0
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Forum: Strategies for group submisions to SRA (BioProject)
ncbi sra next-gen forum core facility archive written 4 months ago by A. Domingues • 1.8k
0
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0
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347
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0
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How to submit paired-end fastq files of a single sample to SRA?
sra written 6 months ago by MAPK • 1.4k • updated 4 months ago by Biostar ♦♦ 20
5
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3
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8.7k
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6 follow
3
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Sra-Toolkit 2.3.1 Fastq-Dump Multiplefiles At Once Windows Command Line
sra written 5.9 years ago by deepbiofever • 10 • updated 4 months ago by juan.olvido • 0
3
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1
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541
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1
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how do I split fastq from SRA?
split-fastq sra fastq-dump rna-seq written 4 months ago by jaqx008 • 40 • updated 4 months ago by piyushjo • 110
3
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2
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228
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5 follow
2
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how to deal with sra files which can generate three fastq files?
sra fastq fastq-dump written 4 months ago by fanglujing • 30 • updated 4 months ago by t.kuilman • 720
1
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1
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1.2k
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1
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Demultiplexing SRA data
sra ngs multiplex illumina written 3.0 years ago by Adrian Pelin • 2.2k • updated 5 months ago by RamRS ♦ 20k
4
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2
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455
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2
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What is the next step after download the ncbi sra data of pacbio RSII sequencing
sra fastq pacbio written 5 months ago by Sparrow_kop • 190 • updated 5 months ago by harish • 140
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