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2
votes
1
answer
67
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1
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issue with fastQ reads download from NCBI-SRA database?
ncbi sra fastq ngs sequencing written 4 days ago by Dineshkumar K • 10 • updated 4 days ago by Researcher • 40
4
votes
0
answers
231
views
0
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How do I find out the adaptor sequences for SRA data?
sra adaptor written 3 months ago by MAPK • 1.4k • updated 6 days ago by hermidalc • 0
8
votes
1
answer
265
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5 follow
1
answer
NCBI SRA AWS AMI
ncbi sra aws s3 written 5 weeks ago by joe • 40 • updated 9 days ago by hermidalc • 0
0
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0
answers
88
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0
answers
How do I run a .fastq single-end file in rsem-calculate-expression?
rsem-calculate-expression sra ribeiro rna-seq rsem written 17 days ago by matheusribalves • 0
4
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0
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178
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0
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PacBio file type from NCBI run download
ncbi sra pacbio written 5 weeks ago by joe • 40
2
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2
answers
191
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2
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How to download RNA-seq dataset (fastq.gz files) from GEO and SRA databases?
geo sra download-dataset rna-seq fasq.qz written 10 weeks ago by F. Golestan • 20 • updated 10 weeks ago by ATpoint ♦ 22k
3
votes
1
answer
244
views
6 follow
1
answer
How to create own SRAdb
geo sra sradb written 3 months ago by Deepak Tanwar • 4.0k • updated 3 months ago by Sean Davis ♦ 25k
3
votes
2
answers
306
views
2
answers
SRA Toolkit cannot download
sra written 3 months ago by Barış Ekim • 10 • updated 3 months ago by ATpoint ♦ 22k
27
votes
4
answers
8.7k
views
14 follow
4
answers
Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
sra fastq written 5.6 years ago by Devon Ryan ♦ 91k • updated 3 months ago by sschmeier • 80
7
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2
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260
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2
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What is the difference between SRR, DRR, ERR ?
sra rna-seq written 3 months ago by Helen • 30 • updated 3 months ago by Malka • 20
2
votes
1
answer
168
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6 follow
1
answer
How to find correspondence between GSM and all SRA identifiers (SRR DRR ERR) ?
srr sra geo rna-seq written 3 months ago by Helen • 30 • updated 3 months ago by predeus • 1.2k
14
votes
2
answers
4.0k
views
12 follow
2
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Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 2.5 years ago by predeus • 1.2k • updated 3 months ago by Helen • 30
1
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0
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150
views
0
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Latest https for SRAmetadb.sqlite db
ncbi sra srametadb written 4 months ago by joe • 40
4
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0
answers
327
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5 follow
0
answers
Downloading paired end fastq from SRA
singlecell sra rna-seq written 4 months ago by t.t • 10 • updated 4 months ago by ATpoint ♦ 22k
0
votes
1
answer
280
views
1
answer
adding pair info to fastq files, for BWA
illumina bwa sra written 5 months ago by sullis02 • 0
2
votes
1
answer
393
views
1
answer
Download data from GEO/SRA using link
geo sra fastq written 5 months ago by rioualen • 390 • updated 5 months ago by genomax ♦ 71k
0
votes
1
answer
225
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1
answer
Uploading to SRA: multiple files per BioSample
ncbi sra next-gen written 6 months ago by jo.wolfe • 0 • updated 6 months ago by swbarnes2 ♦ 6.5k
3
votes
1
answer
351
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1
answer
SRA: fastq-dump gives different number of sequences
sra sequence written 10 months ago by jeetsahu • 10 • updated 6 months ago by Biostar ♦♦ 20
7
votes
1
answer
275
views
1
answer
SRA from NCBI?
ncbi sra fastq rna-seq written 6 months ago by star • 190
0
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0
answers
200
views
0
answers
How to select high quality RNA-seq datasets from SRA database?
sra rna-seq written 6 months ago by harrypotterandsbt • 40
2
votes
2
answers
357
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2
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Finding Reads from a DNA Virus
sra virus detection rna-seq written 6 months ago by nickeener • 0 • updated 6 months ago by darren.obbard • 20
26
votes
0
answers
1.0k
views
15 follow
0
answers
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 6 months ago by Phil Ewels • 440
4
votes
1
answer
733
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1
answer
What is the fastest way to download all SRA files of a SRA Study?
ncbi sra sequencing rna-seq download written 6 months ago by lokdeep17 • 0 • updated 6 months ago by ATpoint ♦ 22k
0
votes
0
answers
311
views
0
answers
SRA submission Error: Command based
sra rna-seq written 8 months ago by suren04 • 0 • updated 7 months ago by Biostar ♦♦ 20
1
vote
0
answers
208
views
0
answers
Looking for Recommendations: whole Adult male Danio rerio RNAseq data
sra daniorerio mapping rna-seq written 7 months ago by jaqx008 • 50
1
vote
1
answer
703
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1
answer
SRA record can not be found!
sra written 2.1 years ago by Zhizhong • 240 • updated 7 months ago by Biostar ♦♦ 20
8
votes
1
answer
756
views
1
answer
why fastq-dump doesn`t work?
sra prefetch fastq-dump written 7 months ago by star • 190 • updated 7 months ago by ATpoint ♦ 22k
15
votes
2
answers
825
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8 follow
2
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Bulk download of entire BioProject SRA
ncbi sra sratoolkit entrez utilities bioproject written 7 months ago by Anand Rao • 240 • updated 7 months ago by arup • 1.7k
0
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0
answers
410
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0
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Windows batch cmd for fastq-dump
sra windows fastq-dump written 10 months ago by rrbutleriii • 70 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
325
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0
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SRAdb / SRA difference in overall sample counts
sra sradb written 8 months ago by mayars169 • 20
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