Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: sra • reset
or   Classic search
<prev • 250 results • page 1 of 9 • next >
1
vote
1
answer
1.3k
views
5 follow
1
answer
How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 12 months ago by beneopp • 0 • updated 11 hours ago by dgpiury • 0
7
votes
1
answer
68
views
1
answer
Is there a tool to extract organism names from SRA accession IDs?
taxa sra ncbi written 1 day ago by nikthoma • 0
12
votes
1
answer
107
views
1
answer
There is some way to split a FastQ file by chromosome?
fasta sra fastq chromosome written 2 days ago by calebe_campos26 • 0 • updated 2 days ago by swbarnes2 ♦ 7.0k
2
votes
1
answer
71
views
1
answer
How can I query NCBI SRA for purpose of strain typing/profiling?
sra strain typing written 16 days ago by gatheringdusthere • 20
5
votes
1
answer
129
views
1
answer
Parsing an ExpressionSet for all SRA addresses
sra parse expressionset rna-seq R written 6 weeks ago by kmyers2 • 30 • updated 6 weeks ago by Amar • 620
219
votes
8
answers
99k
views
194 follow
8
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.3 years ago by Obi Griffith ♦ 18k • updated 6 weeks ago by yousefifariba6 • 0
0
votes
2
answers
133
views
5 follow
2
answers
Do all samples in SRA have a corresponding sample in BioSample?
sra sequencing written 7 weeks ago by bimlay2 • 30 • updated 6 weeks ago by JJ • 470
29
votes
0
answers
1.7k
views
18 follow
0
answers
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 9 months ago by Phil Ewels • 480 • updated 7 weeks ago by psschlogl • 20
1
vote
1
answer
145
views
1
answer
Downloading RNA-Seq Dataset
sra chrome rna-seq windows10 written 7 weeks ago by naseerkhan861 • 0
4
votes
0
answers
215
views
0
answers
Forum: publicly available data
geo sra forum arrayexpress written 9 weeks ago by Konstantinos Yeles • 80 • updated 8 weeks ago by h.mon ♦ 28k
0
votes
0
answers
101
views
0
answers
Get original format information from SRA metadata
sra sqlite3 sradb pysradb metadata written 9 weeks ago by mariafirulevabio • 40
0
votes
0
answers
114
views
0
answers
Get single-cell technology used for certain sample
geo metadata gsm scrnaseq sra written 9 weeks ago by mariafirulevabio • 40
9
votes
0
answers
717
views
7 follow
0
answers
Downloading paired end fastq from SRA
singlecell sra rna-seq written 7 months ago by t.t • 10 • updated 11 weeks ago by Roman Hillje • 40
3
votes
1
answer
131
views
1
answer
Confusion with 2nd Read pair SRA download
sra fastq paired reads written 12 weeks ago by jaqx008 • 60
2
votes
1
answer
134
views
1
answer
issue with fastQ reads download from NCBI-SRA database?
ncbi sra fastq ngs sequencing written 3 months ago by Dineshkumar K • 30 • updated 3 months ago by Researcher • 50
4
votes
0
answers
371
views
0
answers
How do I find out the adaptor sequences for SRA data?
sra adaptor written 6 months ago by MAPK • 1.5k • updated 3 months ago by hermidalc • 0
11
votes
1
answer
601
views
8 follow
1
answer
NCBI SRA AWS AMI
ncbi sra aws s3 written 4 months ago by joe • 140 • updated 3 months ago by hermidalc • 0
0
votes
0
answers
140
views
0
answers
How do I run a .fastq single-end file in rsem-calculate-expression?
rsem-calculate-expression sra ribeiro rna-seq rsem written 3 months ago by matheusribalves • 0
4
votes
0
answers
300
views
0
answers
PacBio file type from NCBI run download
ncbi sra pacbio written 4 months ago by joe • 140
2
votes
2
answers
304
views
2
answers
How to download RNA-seq dataset (fastq.gz files) from GEO and SRA databases?
geo sra download-dataset rna-seq fasq.qz written 5 months ago by F. Golestan • 40 • updated 5 months ago by ATpoint ♦ 26k
3
votes
1
answer
342
views
6 follow
1
answer
How to create own SRAdb
geo sra sradb written 5 months ago by Deepak Tanwar • 4.0k • updated 5 months ago by Sean Davis ♦ 25k
3
votes
2
answers
554
views
2
answers
SRA Toolkit cannot download
sra written 5 months ago by Barış Ekim • 10 • updated 5 months ago by ATpoint ♦ 26k
27
votes
4
answers
9.4k
views
14 follow
4
answers
Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
sra fastq written 5.9 years ago by Devon Ryan ♦ 93k • updated 6 months ago by sschmeier • 80
7
votes
2
answers
380
views
2
answers
What is the difference between SRR, DRR, ERR ?
sra rna-seq written 6 months ago by Helen • 30 • updated 6 months ago by Malka • 20
2
votes
1
answer
241
views
6 follow
1
answer
How to find correspondence between GSM and all SRA identifiers (SRR DRR ERR) ?
srr sra geo rna-seq written 6 months ago by Helen • 30 • updated 6 months ago by predeus • 1.3k
15
votes
2
answers
4.3k
views
12 follow
2
answers
Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 2.7 years ago by predeus • 1.3k • updated 6 months ago by Helen • 30
1
vote
0
answers
195
views
0
answers
Latest https for SRAmetadb.sqlite db
ncbi sra srametadb written 7 months ago by joe • 140
0
votes
1
answer
349
views
1
answer
adding pair info to fastq files, for BWA
illumina bwa sra written 8 months ago by sullis02 • 0
2
votes
1
answer
598
views
1
answer
Download data from GEO/SRA using link
geo sra fastq written 8 months ago by rioualen • 390 • updated 8 months ago by genomax ♦ 75k
0
votes
1
answer
314
views
1
answer
Uploading to SRA: multiple files per BioSample
ncbi sra next-gen written 8 months ago by jo.wolfe • 0 • updated 8 months ago by swbarnes2 ♦ 7.0k
<prev • 250 results • page 1 of 9 • next >
Recent Votes
Recent Locations • All »
  • United States, 1 minute ago
  • United States, 3 minutes ago
  • United States, 4 minutes ago
  • USA, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1851 users visited in the last hour