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<prev • 194 results • page 1 of 7 • next >
7
votes
1
answer
83
views
1
answer
What is the recent preference for RNA-seq read deposition perior to publication
sra fairsharing rna-seq repository written 4 days ago by Farbod • 3.1k • updated 4 days ago by i.sudbery • 2.3k
46
votes
4
answers
20k
views
29 follow
4
answers
How To Download All Sra Samples At Once ?
geo sra download written 4.3 years ago by biorepine • 1.4k • updated 6 days ago by Federico Giorgi • 390
2
votes
1
answer
118
views
1
answer
wonderdump.sh and FTP site URL conventions for SRR identifiers
ncbi ftp convention sra wonderdump written 12 days ago by manuel.belmadani • 30
5
votes
1
answer
134
views
1
answer
Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 4 weeks ago by Mitra • 0 • updated 4 weeks ago by ATpoint • 4.4k
1
vote
2
answers
117
views
2
answers
using NCBI SRA data for prinseq
software error sra fastq sequence prinseq written 6 weeks ago by mforthman • 30 • updated 6 weeks ago by swbarnes2 ♦ 3.6k
4
votes
1
answer
8.8k
views
1
answer
Issue With Sra To Fastq Conversion
sra fastq written 6.0 years ago by Arpssss • 40 • updated 11 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
231
views
0
answers
Filter low quality tiles from fastq files downloaded from SRA
quality filtering fastq sra written 4 months ago by dolevrahat • 10 • updated 12 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
170
views
1
answer
SRAToolkit - Delete cache after each sam-dump run
sra sequence sam-dump sratoolkit written 3 months ago by gregoryhuang2005 • 10 • updated 3 months ago by genomax ♦ 49k
0
votes
0
answers
188
views
0
answers
SRAdb: Search full text in study_type
sra bioconductor R written 3 months ago by rororo • 0
6
votes
2
answers
1.9k
views
2
answers
Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 15 months ago by predeus • 560
24
votes
3
answers
5.6k
views
12 follow
3
answers
Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
sra fastq written 4.4 years ago by Devon Ryan ♦ 81k • updated 4 months ago by ATpoint • 4.4k
7
votes
4
answers
1.2k
views
11 follow
4
answers
Download SAM/BAM files from SRA takes ages!!!
sra bam written 11 months ago by Alejandro Jimenez Sanchez • 120 • updated 4 months ago by sutturka • 120
9
votes
4
answers
9.5k
views
6 follow
4
answers
Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sra samtools sam chip-seq written 4.4 years ago by bede.portz • 470 • updated 4 months ago by Biostar ♦♦ 20
169
votes
8
answers
65k
views
151 follow
8
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 3.8 years ago by Obi Griffith ♦ 16k • updated 4 months ago by simplitia • 20
4
votes
1
answer
307
views
1
answer
Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 4 months ago by xarielle • 0 • updated 4 months ago by Istvan Albert ♦♦ 77k
1
vote
1
answer
351
views
1
answer
BLAST stranded SRA for plus or minus?
sra rna-seq blast written 6 months ago by Adria • 10 • updated 5 months ago by h.mon ♦ 15k
0
votes
0
answers
153
views
0
answers
Finding out whether a research paper is published based on NCBI SRR number
ncbi sra 16s written 5 months ago by muraliadithya315 • 10
1
vote
0
answers
766
views
0
answers
Getting multiple *.sra files from NCBI using a list
ncbi sra written 11 months ago by chrys • 40 • updated 5 months ago by Biostar ♦♦ 20
1
vote
3
answers
434
views
5 follow
3
answers
problem in fastq-dump of SRA file
sra fastq-dump written 5 months ago by majeedaasim • 20 • updated 5 months ago by jomo018 • 330
3
votes
0
answers
941
views
0
answers
Tutorial: High Speed Downloading of SRA, SAM and Fastq Files
sra fastq aspera connect sam tutorial written 6 months ago by mckf11111 • 20
20
votes
4
answers
3.9k
views
10 follow
4
answers
Aligning paired end fastq files dumped from SRA
sra fastq bwa mem paired written 3.6 years ago by Zev.Kronenberg ♦ 11k • updated 6 months ago by seelament • 0
2
votes
1
answer
237
views
1
answer
Fastq-Dump Crashes, how to prevent besides continually restarting?
ncbi sra fastq-dump written 6 months ago by dec986 • 100
3
votes
1
answer
426
views
1
answer
Forum: Designing RNA-seq data analysis pipeline
sra ngs forum rna-seq written 7 months ago by ag1805x • 80 • updated 7 months ago by Devon Ryan ♦ 81k
2
votes
0
answers
348
views
0
answers
SRA submission problem
ncbi sra aspera connect written 7 months ago by kk.mahsa • 60
4
votes
2
answers
387
views
2
answers
SRA data sets and runs
rnaseq sra written 7 months ago by MAPK • 1.2k
1
vote
1
answer
381
views
1
answer
Problem in processing SRA file from NCBI
ncbi sra written 7 months ago by majeedaasim • 20 • updated 7 months ago by Sean Davis ♦ 24k
1
vote
0
answers
378
views
0
answers
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
ncbi sra written 7 months ago by kk.mahsa • 60 • updated 7 months ago by Ram ♦ 15k
2
votes
1
answer
401
views
1
answer
combine two fastq file (paired end) to submit in NCBI
sra fastq written 7 months ago by kk.mahsa • 60 • updated 7 months ago by genomax ♦ 49k
0
votes
1
answer
439
views
1
answer
Using SRA Toolkit and Samtools to look at reads mapping to one region in public database
sra alignment chip-seq written 8 months ago by garbuzov • 0
1
vote
1
answer
362
views
1
answer
Using entrez or similar to find number of draft or complete genomes are associated with an SRA
ncbi sra next-gen entrez written 8 months ago by nickp60 • 0
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