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<prev • 200 results • page 1 of 7 • next >
1
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1
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1.1k
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1
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Demultiplexing SRA data
sra ngs multiplex illumina written 2.6 years ago by Adrian Pelin • 2.2k • updated 2 days ago by RamRS ♦ 17k
4
votes
2
answers
94
views
2
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What is the next step after download the ncbi sra data of pacbio RSII sequencing
sra fastq pacbio written 6 days ago by Sparrow_kop • 190 • updated 5 days ago by harish • 130
3
votes
0
answers
219
views
0
answers
How can I submit paired-end SRA data to NCBI?
ncbi sra written 16 days ago by MAPK • 1.3k • updated 9 days ago by Biostar ♦♦ 20
2
votes
1
answer
85
views
1
answer
Obtaining GSM numbers from SRA ids
sra rna-seq written 11 days ago by Dirk • 60
1
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2
answers
493
views
2
answers
Problem in processing SRA file from NCBI
ncbi sra written 10 months ago by majeedaasim • 20 • updated 17 days ago by gtrwst9 • 0
0
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0
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183
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0
answers
How to submit paired-end fastq files of a single sample to SRA?
sra written 5 weeks ago by MAPK • 1.3k • updated 5 weeks ago by WouterDeCoster ♦ 32k
6
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0
answers
248
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0
answers
NCBI esearch for cited papers with public SRA data
ncbi sra esearch entrez written 9 weeks ago by Jeremy Leipzig ♦ 17k
0
votes
1
answer
210
views
1
answer
Fastq file from SRA database not mapping to to the genome
sra fastq mapping rna-seq written 10 weeks ago by amoltej • 80 • updated 10 weeks ago by genomax ♦ 56k
7
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5
answers
1.2k
views
5
answers
SRA to fastq
sra fastq next-gen sequencing written 3.0 years ago by aj123 • 70 • updated 11 weeks ago by i.sudbery • 2.5k
8
votes
1
answer
172
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1
answer
What is the recent preference for RNA-seq read deposition perior to publication
sra fairsharing rna-seq repository written 3 months ago by Farbod • 3.1k • updated 3 months ago by i.sudbery • 2.5k
47
votes
4
answers
22k
views
31 follow
4
answers
How To Download All Sra Samples At Once ?
geo sra download written 4.6 years ago by biorepine • 1.4k • updated 3 months ago by Federico Giorgi • 420
2
votes
1
answer
220
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1
answer
wonderdump.sh and FTP site URL conventions for SRR identifiers
ncbi ftp convention sra wonderdump written 3 months ago by manuel.belmadani • 60
5
votes
1
answer
284
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1
answer
Converting a bunch or SRA files using fastq-dump split-files
ncbi sra split-files fastq-dump written 4 months ago by Mitra • 0 • updated 4 months ago by ATpoint ♦ 7.5k
1
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2
answers
213
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2
answers
using NCBI SRA data for prinseq
software error sra fastq sequence prinseq written 4 months ago by mforthman • 30 • updated 4 months ago by swbarnes2 ♦ 4.0k
4
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1
answer
8.9k
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1
answer
Issue With Sra To Fastq Conversion
sra fastq written 6.3 years ago by Arpssss • 40 • updated 5 months ago by Biostar ♦♦ 20
0
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0
answers
338
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0
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Filter low quality tiles from fastq files downloaded from SRA
quality filtering fastq sra written 7 months ago by dolevrahat • 10 • updated 6 months ago by Biostar ♦♦ 20
2
votes
1
answer
275
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1
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SRAToolkit - Delete cache after each sam-dump run
sra sequence sam-dump sratoolkit written 6 months ago by gregoryhuang2005 • 10 • updated 6 months ago by genomax ♦ 56k
0
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0
answers
232
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0
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SRAdb: Search full text in study_type
sra bioconductor R written 6 months ago by rororo • 0
6
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2
answers
2.3k
views
2
answers
Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 18 months ago by predeus • 630
24
votes
3
answers
6.3k
views
12 follow
3
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Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
sra fastq written 4.7 years ago by Devon Ryan ♦ 84k • updated 7 months ago by ATpoint ♦ 7.5k
7
votes
4
answers
1.6k
views
11 follow
4
answers
Download SAM/BAM files from SRA takes ages!!!
sra bam written 14 months ago by Alejandro Jimenez Sanchez • 120 • updated 7 months ago by sutturka • 120
9
votes
4
answers
9.8k
views
6 follow
4
answers
Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sra samtools sam chip-seq written 4.6 years ago by bede.portz • 470 • updated 7 months ago by Biostar ♦♦ 20
172
votes
8
answers
70k
views
153 follow
8
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 4.1 years ago by Obi Griffith ♦ 17k • updated 7 months ago by simplitia • 30
4
votes
1
answer
424
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1
answer
Paired-end SRA experiment, two samples come out as single-end
sra fastq-dump rna-seq written 7 months ago by xarielle • 0 • updated 7 months ago by Istvan Albert ♦♦ 77k
1
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1
answer
433
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1
answer
BLAST stranded SRA for plus or minus?
sra rna-seq blast written 10 months ago by Adria • 10 • updated 8 months ago by h.mon ♦ 19k
0
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0
answers
194
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0
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Finding out whether a research paper is published based on NCBI SRR number
ncbi sra 16s written 8 months ago by muraliadithya315 • 10
1
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0
answers
987
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0
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Getting multiple *.sra files from NCBI using a list
ncbi sra written 14 months ago by chrys • 40 • updated 8 months ago by Biostar ♦♦ 20
1
vote
3
answers
597
views
5 follow
3
answers
problem in fastq-dump of SRA file
sra fastq-dump written 8 months ago by majeedaasim • 20 • updated 8 months ago by jomo018 • 360
3
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0
answers
1.3k
views
0
answers
Tutorial: High Speed Downloading of SRA, SAM and Fastq Files
sra fastq aspera connect sam tutorial written 9 months ago by mckf11111 • 40
20
votes
4
answers
4.2k
views
10 follow
4
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Aligning paired end fastq files dumped from SRA
sra fastq bwa mem paired written 3.8 years ago by Zev.Kronenberg ♦ 11k • updated 9 months ago by seelament • 0
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