Showing: srareset
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1
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How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 12 months ago by beneopp0 • updated 11 hours ago by dgpiury0
7
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68
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12
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1
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107
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1
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There is some way to split a FastQ file by chromosome?
fasta sra fastq chromosome written 2 days ago by calebe_campos260 • updated 2 days ago by swbarnes27.0k
2
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1
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71
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1
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5
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1
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129
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1
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Parsing an ExpressionSet for all SRA addresses
sra parse expressionset rna-seq R written 6 weeks ago by kmyers230 • updated 6 weeks ago by Amar620
219
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8
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194 follow
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.3 years ago by Obi Griffith18k • updated 6 weeks ago by yousefifariba60
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2
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133
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5 follow
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Do all samples in SRA have a corresponding sample in BioSample?
sra sequencing written 7 weeks ago by bimlay230 • updated 6 weeks ago by JJ470
29
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0
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1.7k
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18 follow
0
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1
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1
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145
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1
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4
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0
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215
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Forum: publicly available data
geo sra forum arrayexpress written 9 weeks ago by Konstantinos Yeles80 • updated 8 weeks ago by h.mon28k
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0
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114
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0
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9
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717
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7 follow
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Downloading paired end fastq from SRA
singlecell sra rna-seq written 7 months ago by t.t10 • updated 11 weeks ago by Roman Hillje40
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1
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131
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1
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2
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1
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134
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1
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issue with fastQ reads download from NCBI-SRA database?
ncbi sra fastq ngs sequencing written 3 months ago by Dineshkumar K30 • updated 3 months ago by Researcher50
4
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0
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371
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How do I find out the adaptor sequences for SRA data?
sra adaptor written 6 months ago by MAPK1.5k • updated 3 months ago by hermidalc0
11
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1
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601
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8 follow
1
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NCBI SRA AWS AMI
ncbi sra aws s3 written 4 months ago by joe140 • updated 3 months ago by hermidalc0
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140
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4
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300
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PacBio file type from NCBI run download
ncbi sra pacbio written 4 months ago by joe140
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2
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304
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2
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3
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1
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342
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6 follow
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How to create own SRAdb
geo sra sradb written 5 months ago by Deepak Tanwar4.0k • updated 5 months ago by Sean Davis25k
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2
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554
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2
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SRA Toolkit cannot download
sra written 5 months ago by Barış Ekim10 • updated 5 months ago by ATpoint26k
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4
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14 follow
4
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Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
sra fastq written 5.9 years ago by Devon Ryan93k • updated 6 months ago by sschmeier80
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2
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380
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What is the difference between SRR, DRR, ERR ?
sra rna-seq written 6 months ago by Helen30 • updated 6 months ago by Malka20
2
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1
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241
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6 follow
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How to find correspondence between GSM and all SRA identifiers (SRR DRR ERR) ?
srr sra geo rna-seq written 6 months ago by Helen30 • updated 6 months ago by predeus1.3k
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2
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12 follow
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Get a complete GSM-to-SRX/SRR table
geo sra gsm gse sradb written 2.7 years ago by predeus1.3k • updated 6 months ago by Helen30
1
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195
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Latest https for SRAmetadb.sqlite db
ncbi sra srametadb written 7 months ago by joe140
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349
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1
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2
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598
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Download data from GEO/SRA using link
geo sra fastq written 8 months ago by rioualen390 • updated 8 months ago by genomax75k
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1
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314
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1
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Uploading to SRA: multiple files per BioSample
ncbi sra next-gen written 8 months ago by jo.wolfe0 • updated 8 months ago by swbarnes27.0k
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