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<prev • 176 results • page 1 of 6 • next >
0
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121
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Using SRA Toolkit and Samtools to look at reads mapping to one region in public database
sra alignment chip-seq written 2 days ago by garbuzov • 0
1
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1
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140
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1
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Using entrez or similar to find number of draft or complete genomes are associated with an SRA
ncbi sra next-gen entrez written 11 days ago by nickp60 • 0
9
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4
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8.6k
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6 follow
4
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Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sra samtools sam chip-seq written 3.7 years ago by bede.portz • 450 • updated 10 days ago by genomax ♦ 34k
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424
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5 follow
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Is there a way to download FASTq files from SRR IDs?
sra eutility fastq written 10 weeks ago by Paul • 50 • updated 14 days ago by Biostar ♦♦ 20
1
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121
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Where can I find DNase-seq assays of cell line MCF-10A?
sra dnase sequence ngs dnase-seq written 26 days ago by vue • 0 • updated 25 days ago by Kevin Blighe • 3.3k
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126
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Tool: ARCHS4: Massive Mining of Publicly Available RNA-seq Data from Human and Mouse
sra mammalian tool sequencing alignment rna-seq written 26 days ago by alexander.lachmann • 20
3
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2
answers
511
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2
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fastq-dump timeout exhausted error
sra written 5 months ago by bxia • 100 • updated 4 weeks ago by samesense • 40
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121
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SRAtoolkit: error while running sam-dump
ncbi sra sam sratoolkit written 4 weeks ago by chahatupretiiitk • 20
0
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1
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212
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1
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automated SRA annotaion/Accession List
ncbi sra run selector rna-seq written 5 months ago by cakesebastian • 0 • updated 6 weeks ago by hh.earlydays • 0
1
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1
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212
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1
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SRA record can not be found!
sra written 10 weeks ago by Zhizhong • 230 • updated 10 weeks ago by Philipp Bayer ♦ 4.8k
2
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2
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253
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2
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Retrieving SRA files using Taxonomic IDs
sra eutility taxonomy written 10 weeks ago by Paul • 50
0
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1
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342
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1
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Where and how to fetch phenotype data of the relevant SRA-identified tuberculosis WGS samples?
software sra association gwas written 10 weeks ago by bioinform • 20 • updated 10 weeks ago by Istvan Albert ♦♦ 74k
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3
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4.8k
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3
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Insert Length Vs Nominal Length For Paired-End Data
sra paired written 6.1 years ago by Daniel Standage ♦ 3.7k • updated 10 weeks ago by devbt15 • 0
1
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2
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243
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2
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How to parallelize fastq-dump command when reading SRA IDs from a .txt file?
sra gnu fastq-dump paralell shell written 12 weeks ago by bioinform • 20 • updated 12 weeks ago by ole.tange • 2.8k
4
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3
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397
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10 follow
3
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Download SAM/BAM files from SRA takes ages!!!
sra bam written 12 weeks ago by Alejandro Jimenez Sanchez • 100 • updated 12 weeks ago by ghostforever.shi • 10
9
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1
answer
778
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7 follow
1
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Tutorial: How to upload your RNA-Seq data to NCBI Sequence Read Archive (SRA)
ncbi sra tutorial biosample bioproject written 7 months ago by CandiceChuDVM • 1.4k • updated 3 months ago by Lucila • 10
4
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1
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268
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6 follow
1
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Download SRA data via SRA Toolkit.
sra written 3 months ago by XBria • 30 • updated 3 months ago by James Ashmore • 2.1k
2
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1
answer
197
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1
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Query regarding the EBI ftp archive for SRA study SRP047194/PRJNA261255
ebi sra fastq rna-seq written 3 months ago by vchris_ngs • 4.0k
1
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1
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299
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5 follow
1
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How to download raw data in batch from NCBI based on Series Accession number or Platform ID
sra written 5 months ago by biolab • 960 • updated 3 months ago by Istvan Albert ♦♦ 74k
2
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1
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244
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1
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How to download SRA fastq filese
sra command line written 3 months ago by 110300553 • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 99k
1
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0
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259
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0
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Getting multiple *.sra files from NCBI using a list
ncbi sra written 3 months ago by chrys • 30
1
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1
answer
281
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1
answer
How to correctly use E-fetch from E-utilities?
ncbi sra e-utilities linux written 3 months ago by jaynaythan • 10
2
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1
answer
260
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1
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How to download metadata from the SRA?
ncbi sra metdata written 3 months ago by jaynaythan • 10
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1
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252
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1
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How to download all searched SRA result data at once?
sra data-mining data mining download written 3 months ago by sratestimon • 0 • updated 3 months ago by timstuart • 30
18
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3
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21k
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9 follow
3
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Sra Format Usage - How To
sra fastq conversion written 5.0 years ago by Daniel • 40 • updated 3 months ago by gaughey • 0
0
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0
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158
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0
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Retrieving SRA datasets for completed bacterial genomes
ncbi sra written 4 months ago by ThePresident • 90
12
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4
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1.9k
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6 follow
4
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SRX from SRR IDs
sra written 2.9 years ago by biorepine • 1.3k • updated 5 months ago by James Ashmore • 2.1k
2
votes
1
answer
219
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1
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Confusion in SRA submission
sra rna-seq written 5 months ago by arunprasanna83 • 10 • updated 5 months ago by genomax ♦ 34k
2
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2
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261
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2
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high duplicated level in SRA
sra alignment snp written 5 months ago by kk.mahsa • 40 • updated 5 months ago by agata88 • 610
1
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1
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278
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1
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Extracting specific metadata from SRA runs
ncbi sra sradb genomics metadata written 5 months ago by Gon • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 99k
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