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2
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51
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How to set sleep in GNU parallel in a esearch/efetch script
ncbi sra shell programming written 1 day ago by MAPK • 1.6k
0
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0
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61
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0
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Interpreting paired-end tumor-normal WES
exome sra fastq paired-end written 3 days ago by the_darkside • 0
29
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3
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24k
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3
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How to split paired end SRA file into 2 correct fastq files
sra fastq next-gen written 3.7 years ago by thustar • 100 • updated 10 days ago by Carlo.Ga • 0
0
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0
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71
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0
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Convert in fastq format a list of SRA files
sra fastq rna-seq cmd convert written 24 days ago by stefaquara • 0
6
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1
answer
169
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1
answer
News: NCBI wants to remove quality scores from SRA
sra trimming assembly quality scores genome news written 4 weeks ago by zhousun21 • 20 • updated 4 weeks ago by genomax ♦ 87k
0
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1
answer
88
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1
answer
erros in dowloading SRA data
sra written 6 weeks ago by annaA • 10 • updated 6 weeks ago by ATpoint ♦ 36k
0
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0
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93
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0
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How to search the expression of a gene in a transcriptome
sra transcriptomics rna-seq blast written 6 weeks ago by Monocyte • 0
0
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115
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0
answers
Error downloading streams from SRA-ncbi when running fastq-dump
ncbi sra fastq-dump rna-seq written 9 weeks ago by Sam_ • 0
0
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0
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104
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0
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Get data from SRA with just SAMN IDs
ncbi sra fastq rna-seq written 10 weeks ago by mark.dunning • 210
1
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98
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0
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control and test samples name of PRJEB12123
sra metagenomics sequencing written 11 weeks ago by dpc • 140
38
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3.3k
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22 follow
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Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
sra fastq tool sequence-read-archive download written 17 months ago by Phil Ewels • 560 • updated 3 months ago by ATpoint ♦ 36k
1
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1
answer
303
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1
answer
Help downloading original data from SRA
software error sra sequence sra-toolkit written 3 months ago by stefan.grabuschnig • 0
0
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0
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124
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0
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NCBI error report
ncbi sra next-gen written 3 months ago by ofir.griess • 0
0
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1
answer
152
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1
answer
SRA download question
scrna-seq sra rna-seq 10x genomics written 3 months ago by awells2 • 0 • updated 3 months ago by ATpoint ♦ 36k
0
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0
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280
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0
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Local non-kart file has 0 unresolved dependencies?
sratoolkit rna-seq sra written 4 months ago by lin97868 • 0 • updated 3 months ago by Arup Ghosh ♦ 2.6k
4
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1
answer
209
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1
answer
Interpretation of SRA files
sra fastq paired-end reads headers written 4 months ago by dominique.massau • 0 • updated 4 months ago by wm • 470
1
vote
1
answer
491
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1
answer
How do I run a .fastq single-end file in rsem-calculate-expression?
rsem-calculate-expression sra ribeiro rna-seq rsem written 11 months ago by matheusribalves • 0 • updated 4 months ago by svp • 100
3
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1
answer
607
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5 follow
1
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Downloading FASTQ with aspera
sra written 4 months ago by dagurim • 10 • updated 4 months ago by ATpoint ♦ 36k
0
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1
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1.3k
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5 follow
1
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ERROR: "ascp: Failed to open TCP connection for SSH, exiting."
sra ascp aspera connect ena written 4 months ago by dpc • 140
0
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0
answers
166
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0
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SRA run data access
ncbi sra next-gen sequence illumina written 4 months ago by dpc • 140
6
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3
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396
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3
answers
Downloading SRA data
reads sra metagenomics written 4 months ago by anabaena • 0 • updated 4 months ago by liorglic • 320
1
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1
answer
137
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1
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Cancer exome sequences
sra sequence cancer written 5 months ago by phoenix.sum13 • 20 • updated 5 months ago by Kevin Blighe ♦ 63k
0
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884
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0
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A problem with download SRA using SRA toolkit
ncbi sra sra toolkit configuration written 5 months ago by reza • 230
3
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1
answer
320
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1
answer
Remote blast of SRA database
sra blast written 6 months ago by emre.cto • 0 • updated 6 months ago by Brice Sarver • 3.5k
3
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1
answer
188
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1
answer
Retrieve "Abstract" of SRP accession from SRA
sra written 6 months ago by grant.hovhannisyan • 2.0k • updated 6 months ago by genomax ♦ 87k
0
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0
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227
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0
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Barcode and Linker for QIIME2 analysis
sra metagenome qiime2 metadata barcode written 6 months ago by karthikqk95 • 0
0
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1
answer
221
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1
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efetch sra suddenly stopping
ncbi sra fastq esearch efetch written 7 months ago by barry • 0 • updated 7 months ago by ATpoint ♦ 36k
0
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228
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0
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Hisat2 --sra-acc option (redirect sra file to a desired directory)
ncbi sra hisat2 written 7 months ago by Chvatil • 40
232
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8
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112k
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201 follow
8
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.9 years ago by Obi Griffith ♦ 18k • updated 7 months ago by Chvatil • 40
1
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1
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2.2k
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5 follow
1
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How do you use MultiQC on FastQC files taken from SRA files?
sra galaxy fastq-dump multiqc fastqc written 20 months ago by beneopp • 0 • updated 7 months ago by dgpiury • 0
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