stacks Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answer

679

views

answer

LOSITAN only recognising one loci from STACKS genepop file

outlier stacks lositan written 2.5 years ago by jamierobertsells • 0 • updated 4 months ago by a.r.hoelzel • 0

votes

answers

399

views

answers

News: 5 PART-FUNDED SCHOLARSHIPS for the course "The Practice of RADseq: Population Genomics Analysis with Stacks (RDSQ01)"

rad-seq news stacks genomics written 7 months ago by oliverhooker • 60

votes

answers

648

views

answers

Allele frequency visualization

R stacks vcftools snp written 14 months ago by jaafari.omid • 50 • updated 11 months ago by msimmer92 • 220

votes

answers

957

views

answers

How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (remove PCR duplicates)?

bioinformatics next-gen ddrad stacks dbr written 2.4 years ago by beausoleilmo • 300 • updated 12 months ago by Al.Lele • 0

votes

answers

572

views

answers

Extract mitochondrial DNA from paired-end RAD-seq data: bwa and stacks

rad-seq stacks bwa written 17 months ago by CaffeSospeso • 40

votes

answers

525

views

answers

joinmap output from genotypes program of Stacks

linkage mapping stacks ddrad joinmap written 20 months ago by jav • 0

votes

answers

564

views

answers

stacks denovo output directory can't be read in running genotypes program

linkage map stacks ddrad genotypes joinmap written 20 months ago by jav • 0

votes

answers

396

views

answers

News: Workshop_RAD-seq data analysis in Berlin (2-6 July 2018 )

news radseq snp stacks written 21 months ago by carlopecoraro2 • 1.4k

votes

answers

519

views

answers

News: RAD-seq data analysis course in Berlin

rad-seq bioinformatics news stacks unix written 22 months ago by carlopecoraro2 • 1.4k

votes

answer

709

views

answer

News: Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL

bioinformatics news radseq stacks written 2.3 years ago by carlopecoraro2 • 1.4k

votes

answers

1.2k

views

answers

News: Course: RADseq data analysis in Berlin (4-8/12/17)

bioinformatics news radseq stacks written 2.3 years ago by carlopecoraro2 • 1.4k

votes

answers

630

views

answers

error in using stacks pipeline

assembly ngs stacks written 2.5 years ago by shynilasanthi • 30

vote

answers

1.1k

views

answers

Identify the number of unique fragments from MiSeq data

rad stacks miseq written 3.6 years ago by arash.askary • 10 • updated 3.6 years ago by natasha.sernova • 3.7k

votes

answers

1.2k

views

answers

Anybody use Stacks to study RAD seq data ?

rad seq stacks written 3.7 years ago by Picasa • 490

vote

answers

1.9k

views

answers

Generating genetic map using the mapping population (GBS data)

linkage map stacks genetic map gbs written 4.3 years ago by arnstrm • 1.7k

Recent Votes

Recent Locations • All »

European Union, just now
Germany, 1 minute ago
Russian Federation, 2 minutes ago
University of Southampton, UK, 3 minutes ago

Recent Awards • All »

Scholar to ATpoint ♦ 29k
Scholar to Pierre Lindenbaum ♦ 126k
Popular Question to Joe ♦ 16k
Teacher to ATpoint ♦ 29k
Teacher to Mensur Dlakic • 3.3k
Scholar to Mensur Dlakic • 3.3k

Recent Replies

C: BBSketch - A Tool for Rapid Sequence Comparison by silas.kieser • 0
Perfect sketch.sh *.fasta out=lotsOfSketches.sketch perfile that was what I was looking for!
C: VEP not returning gnomAD AF by michal.inbar • 0
Thanks! 1) Does this mean it is suspected by dbSNP for being a false positive variant in the gnom...
C: makeblastdb with fasta error: BLAST options error by Michael Dondrup ♦ 47k
Using only the first sequence entry seems already enough to reproduce the problem.
A: Create a heatmap by Morteza Hadizadeh • 20
I am sorry for the delay in replying, Thanks so much for your valuable answers.
C: VEP not returning gnomAD AF by manuel.belmadani • 1.2k
You could try [wAnnovar][1] which seems to work for that variant. [1]: http://wannovar.wglab....
A: VEP not returning gnomAD AF by Ben_Ensembl • 1.1k
Hi Michal, This variant is listed as suspect by dbSNP: http://grch37.ensembl.org/Homo_sapiens/Va...
A: How to rename multiple fastq files by ENK • 0
Thank you all for your suggestions. I used that of Mensur and it work just fine. Much appreciated.
C: How to rename multiple fastq files by ENK • 0
Hi! Mensur. Thank you. I tried your code and worked well giving; NBS0_1700_1_R1.fastq NBS0_1700_1...
C: PCR duplicates and sequence duplicates by ATpoint ♦ 29k
Check that column right of your post. Plenty of PCR duplicate-related posts there.
C: The Tophta2 ERR, [ERRno 2] by AsoInfo • 280
Please have a look at the following question: https://www.biostars.org/p/42792/ Try using the o...
C: Merge VCF file by devarora • 50
Thank you Pierre for the suggestion. I only have 70-80 samples and running in GVCF mode for each ...
C: How to pass arguments in a bash script to perform read alignment to the referenc by Joe ♦ 16k
Why are you using `sudo` here? You've given that script admin privileges and that is **not** a s...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1981 users visited in the last hour