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News: Workshop_RAD-seq data analysis in Berlin (2-6 July 2018 )

news radseq snp stacks written 27 days ago by carlopecoraro2 • 710

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110

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News: RAD-seq data analysis course in Berlin

rad-seq bioinformatics news stacks unix written 10 weeks ago by carlopecoraro2 • 710

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297

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News: Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL

bioinformatics news radseq stacks written 7 months ago by carlopecoraro2 • 710

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431

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News: Course: RADseq data analysis in Berlin (4-8/12/17)

bioinformatics news radseq stacks written 8 months ago by carlopecoraro2 • 710

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420

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How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (remove PCR duplicates)?

bioinformatics next-gen ddrad stacks dbr written 9 months ago by beausoleilmo • 190 • updated 8 months ago by Biostar ♦♦ 20

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331

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error in using stacks pipeline

assembly ngs stacks written 9 months ago by shynilasanthi • 30

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309

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LOSITAN only recognising one loci from STACKS genepop file

outlier stacks lositan written 9 months ago by jamierobertsells • 0

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635

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Identify the number of unique fragments from MiSeq data

rad stacks miseq written 23 months ago by arash.askary • 10 • updated 23 months ago by natasha.sernova • 2.9k

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687

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Anybody use Stacks to study RAD seq data ?

rad seq stacks written 2.0 years ago by Picasa • 350

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1.2k

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Generating genetic map using the mapping population (GBS data)

linkage map stacks genetic map gbs written 2.6 years ago by arnstrm • 1.6k

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Recent Replies

C: Capture Output files using glob by ttom • 170
OK in this case, the result files are written to `spladder_TEST` directory.
C: Differences in exon number from Biopython Entrez Package and ANNOVAR by finswimmer ♦ 2.8k
What is the source for the annotation by ANNOVAR? At ensembl I cannot find any transcript with 22...
C: TCGA Dataset of cancer study by vrrani • 0
Thank you. In the one of the article I am reading (Integration of Gene Expression Data and Methy...
C: qPCR Ct value to the genome copy number by lokraj2003 • 0
I didn't know about this. I will try to look for it. Thanks
C: Questions about de novo genome assembly from mixed DNA samples by niuyw • 20
Yes, I agree with you. Because I need to set a threshold to filter out contaminated contigs, I pr...
A: Compute Phylogenetic Trees Using Snps Data (VCF files) by princy149 • 30
read its manual first and if you have problem then let me know..i will explain you steps..
C: How to get plasmid or costruct sequence from fastq file in c.elegans Whole-genom by mbk0asis • 350
Map the fastq on construct. Extract mapped reads. Trim off the plasmid sequences. Map the rema...
A: Compute Phylogenetic Trees Using Snps Data (VCF files) by princy149 • 30
http://www.maizegenetics.net/tassel
C: Gene-based clustering of RNA-seq data by IrK • 20
Thank you so much for detailed clarification, Kevin, appreciate it!
A: qPCR Ct value to the genome copy number by Kevin Blighe ♦ 21k
Do the calculations following the ΔΔ Ct (delta delta Ct) method. You don't need a 'package' to do...
C: Issue using MaSuRCA-3.2.6 by Kevin Blighe ♦ 21k
What about Trinity?
A: Fusion gene detection in sam file by Kevin Blighe ♦ 21k
They imply that it's possible: [source: https://nanoporetech.com/transcriptomics] -----------...

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