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<prev • 204 results • page 1 of 7 • next >
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Infer experiment - Failed to determine strandin paired end stranded RNA-seq
hisat2 paired end star rna-seq stranded written 18 days ago by GiusiG • 0 • updated 7 hours ago by Biostar ♦♦ 20
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1
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145
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1
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STAR Splice Junctions normalization
star rna-seq written 5 days ago by Bastien Hervé • 2.7k
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99
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Terrible RNA mapping result by STAR
star rna-seq written 4 days ago by 610225668 • 0
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1
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137
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5 follow
1
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Read count difference between STAR and Bowtie
smallrna mirna-seq bowtie star written 5 days ago by hothriananya • 50 • updated 5 days ago by ATpoint ♦ 11k
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62
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RSEM with STAR aligment
star rsem written 5 days ago by prabin.dm • 30
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STAR two -pass mode - lower alignment rate than one pass mode?
two pass mode alignment star written 6 days ago by Biogeek • 330
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Do STAR genome index and RSEM reference need to be from same files?
rna-seq rsem star written 8 days ago by prabin.dm • 30 • updated 8 days ago by WouterDeCoster ♦ 35k
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111
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STAR alignment error: quantmod not found
rnaseq alignment star written 10 days ago by prabin.dm • 30 • updated 10 days ago by Devon Ryan ♦ 86k
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1
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173
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6 follow
1
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STAR alignment error: ERROR in input reads
fastq star rna-seq written 11 days ago by prabin.dm • 30
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124
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1
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STAR Create Custom Refence Genome
star rna-seq written 12 days ago by b.verhagen • 0
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RSEM BAM outputs, which one to use for RSeQC?
bam star rsem rseqc written 13 days ago by Freek • 10
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Genome Index and Alignment- STAR
genome alignment star rna-seq written 17 days ago by carolgalah • 0 • updated 17 days ago by Kevin Blighe ♦ 33k
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91
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the lower unique mapping rate after Trimming
trimmomatic star rna-seq written 17 days ago by lilingjoyo • 10
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% of reads unmapped: too short - STAR 2.5.2b
alignment star rna-seq written 5 weeks ago by quan.clement • 0
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8 follow
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what do the headers of the rMATS output files mean?
next-gen star mats alternative splicing written 18 months ago by atcggcta • 10 • updated 5 weeks ago by drskm7 • 0
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90
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SC-RNASeq data mappability with STAR
star rna-seq written 5 weeks ago by pyKey • 40
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239
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Set the insert size threshold in STAR
star rna-seq written 3 months ago by alvarocentron91 • 0 • updated 6 weeks ago by Biostar ♦♦ 20
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2
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147
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2
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cause of unmapped short with STAR
star rna-seq written 6 weeks ago by lkianmehr • 30 • updated 6 weeks ago by swbarnes2 ♦ 4.6k
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184
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1
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STAR quantMode geneCounts: weird outcomes
htseq-count star rna-seq written 7 weeks ago by davide.chiarugi • 20
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STAR RNA-seq aligned output ReadsPerGene.out.tab
star differential expression analysis rna-seq written 7 weeks ago by Boboboe • 10 • updated 7 weeks ago by h.mon ♦ 21k
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1
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best pipeline to get gene and transcript counts
count alignment star rna-seq hisat2 written 7 weeks ago by lkianmehr • 30 • updated 7 weeks ago by t.blasco95 • 30
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212
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5', 3' SS and Intron retention read count using STAR out.tab
star rna-seq alternative splicing written 8 weeks ago by thindmarsmission • 0
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132
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how many index has to be constructed by STAR for TE analysis
tetoolkit star index written 8 weeks ago by lkianmehr • 30 • updated 8 weeks ago by h.mon ♦ 21k
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152
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5 follow
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To fetch the reads which are being partially mapped to the genome
jvarkit hisat2 star rna-seq bowtie2 written 8 weeks ago by swadha • 20 • updated 8 weeks ago by genomax ♦ 59k
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How do I configure the read name output from STAR?
paired-end picard chip-seq star written 3.7 years ago by jgbradley1 • 90 • updated 9 weeks ago by RamRS ♦ 19k
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cufflinks large bundles warning
cufflinks star written 10 weeks ago by Sam • 80
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2
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341
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2
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Allele Specific Expression Analysis
x chromosome snp star rna-seq allele specific written 11 weeks ago by Susmita Mandal • 0 • updated 11 weeks ago by grant.hovhannisyan • 1.3k
3
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1
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189
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1
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Looking for chimp genome index (STAR)
chimpanzee chimp genomeindex star mapping written 11 weeks ago by raquelgarza95 • 10 • updated 11 weeks ago by igor ♦ 7.1k
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235
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5 follow
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Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 11 weeks ago by sbbinfo • 0 • updated 11 weeks ago by kristoffer.vittingseerup • 1.0k
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[STAR] 255 Mapping Quality
star rna-seq mutect2 written 2.8 years ago by umn_bist • 320 • updated 12 weeks ago by RamRS ♦ 19k
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