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2
votes
1
answer
76
views
1
answer
RNA STAR error on Gallaxy
star written 22 hours ago by yelekley7 • 0 • updated 22 hours ago by Devon Ryan ♦ 71k
2
votes
1
answer
74
views
1
answer
STAR/ Bowtie2: number of matched base
bowtie2 ngs alignment star written 1 day ago by Chris_AI • 20 • updated 1 day ago by Devon Ryan ♦ 71k
2
votes
5
answers
818
views
5
answers
rRNA detection (for contamination) in RNA-seq
next-gen alignment star rna-seq written 13 months ago by Ron • 600 • updated 8 days ago by Charles Plessy • 2.2k
9
votes
0
answers
221
views
5 follow
0
answers
STAR align multiple files
alignment chip-seq star rna-seq written 19 days ago by ta_awwad • 100
5
votes
3
answers
287
views
3
answers
what do the headers of the rMATS output files mean?
next-gen star mats alternative splicing written 4 months ago by atcggcta • 0 • updated 13 days ago by Rose • 0
12
votes
2
answers
2.7k
views
2
answers
RNA-seq: Explain STAR quantMode geneCounts values
star rna-seq differential expression written 11 months ago by williantafsilva • 90 • updated 15 days ago by neokao • 0
2
votes
2
answers
334
views
5 follow
2
answers
ATACseq with STAR and macs2
macs2 dmrs atac-seq star written 11 weeks ago by Ice P • 0 • updated 27 days ago by simon.vanheeringen • 40
0
votes
0
answers
139
views
0
answers
GFF3 file incompatibilities (source: BRAD)
gff3 gtf star rna-seq formatting error written 29 days ago by dejong.grant • 0
1
vote
0
answers
175
views
0
answers
Error during htseq-count
htseq-count star pysam written 6 weeks ago by baffiak1902 • 10
45
votes
2
answers
2.9k
views
26 follow
2
answers
Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 11 weeks ago by sonpham • 320 • updated 6 weeks ago by y.divyatej • 10
7
votes
2
answers
327
views
5 follow
2
answers
weird STAR output, bash scripting problem
star rna-seq bash written 7 weeks ago by nikelle.petrillo • 70 • updated 7 weeks ago by h.mon ♦ 9.0k
0
votes
0
answers
128
views
0
answers
How Splice Junction database(SJ.out.tab) is generated from GTF(ENSEMBL) and Reference Genome (GRCh38) using STAR Aligner during Genome indexing
gtf hisat star splice junction assembly written 7 weeks ago by inambioinfo • 20
1
vote
3
answers
376
views
3
answers
bash script for RNA seq alignment with STAR
bash star rna-seq script written 9 weeks ago by nicole p • 0 • updated 7 weeks ago by mforde84 • 940
2
votes
1
answer
252
views
1
answer
Does STAR identify new splicing?
alignment star rna-seq written 10 weeks ago by zhangzhenyusz • 20 • updated 10 weeks ago by h.mon ♦ 9.0k
0
votes
0
answers
199
views
0
answers
Read counts of STAR with gff file
gff read-counts star written 11 weeks ago by grant.hovhannisyan • 260
1
vote
0
answers
610
views
0
answers
choosing a suitable max intron size for STAR (plant alignment)
intron size plants star written 14 months ago by Biogeek • 240 • updated 12 weeks ago by claudiorivero92 • 0
0
votes
0
answers
186
views
0
answers
STAR parameters in plants genomes
plant star rna-seq written 12 weeks ago by claudiorivero92 • 0
2
votes
1
answer
176
views
1
answer
Mapping Quality of reads with mismatches in STAR
rnaseq star mapq written 12 weeks ago by grant.hovhannisyan • 260 • updated 12 weeks ago by Devon Ryan ♦ 71k
5
votes
0
answers
257
views
5 follow
0
answers
Problem building reference genome using STAR
star transcriptome written 3 months ago by ashish • 110
0
votes
0
answers
249
views
0
answers
Genome guided assembly with Trinity using STAR genome index
trinity star rna-seq written 3 months ago by nikelle.petrillo • 70
2
votes
0
answers
283
views
0
answers
STAR Aligner Suddently changed output file???
unix alignment rna 2pass star written 3 months ago by jack.baines2 • 0 • updated 3 months ago by h.mon ♦ 9.0k
0
votes
0
answers
198
views
0
answers
STAR/StringTie compatibility on tag HI in the BAM alignment file
stringtie star written 3 months ago by Megan • 30
0
votes
1
answer
225
views
1
answer
unexpectedly low speed of STAR aligner
star rna-seq written 3 months ago by nfursova.msu • 0 • updated 3 months ago by Devon Ryan ♦ 71k
3
votes
1
answer
200
views
1
answer
STAR Indexing problems with unassambled vertebrate genomes
gtf star rna-seq written 4 months ago by sergio.espeso-gil • 0 • updated 3 months ago by colindaven • 340
0
votes
1
answer
168
views
1
answer
What happens during seed stitching when STAR initially gets the wrong MMP?
star rna-seq written 4 months ago by eric.kern13 • 90 • updated 4 months ago by Santosh Anand • 3.0k
4
votes
2
answers
288
views
6 follow
2
answers
STAR genomeLoad overlap conflict
genomeload cluster star rna-seq written 4 months ago by cakesebastian • 0 • updated 4 months ago by h.mon ♦ 9.0k
6
votes
2
answers
381
views
5 follow
2
answers
Mapping RNA-Seq data on genome from another species
genome hisat2 star rna-seq mapping written 5 months ago by tlorin • 200 • updated 5 months ago by Brian Bushnell ♦ 14k
6
votes
1
answer
330
views
1
answer
Cannot Generate Genome from RNA Transcript in STAR
genomegenerate star rna-seq written 5 months ago by rekren • 10 • updated 5 months ago by Santosh Anand • 3.0k
2
votes
1
answer
252
views
1
answer
"Spikey" RNA-Seq coverage
alignment star rna-seq written 5 months ago by Walter Baumann • 0 • updated 5 months ago by Macspider • 1.5k
8
votes
2
answers
222
views
2
answers
How can I only took the mapped ones from STAR ?
genome star rna-seq samunmapped written 6 months ago by rekren • 10 • updated 6 months ago by andrew.j.skelton73 • 3.9k
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