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<prev • 178 results • page 1 of 6 • next >
5
votes
0
answers
94
views
0
answers
STAR index doesn't finish
star rna-seq written 2 days ago by alvarocentron91 • 0
3
votes
0
answers
116
views
0
answers
Set the insert size threshold in STAR
star rna-seq written 8 days ago by alvarocentron91 • 0
6
votes
1
answer
155
views
1
answer
Problem mapping with STAR
tophat star hisat2 written 9 days ago by alvarocentron91 • 0 • updated 9 days ago by WouterDeCoster ♦ 32k
2
votes
1
answer
128
views
1
answer
which genes have altered transcript proportions?
star rsem rna-seq written 25 days ago by mamillerpa • 30 • updated 25 days ago by h.mon ♦ 19k
7
votes
1
answer
314
views
1
answer
Running STAR aligner on paired-end reads as single-end read
single end paired end star align rna-seq written 6 weeks ago by Glory Basumata • 10 • updated 6 weeks ago by h.mon ♦ 19k
0
votes
1
answer
186
views
1
answer
How to select a gene annotation file in ensembl that contain un-localized scaffolds, but NO patches or haplotypes?
genome assembly star rna-seq written 11 weeks ago by salamandra • 170
4
votes
2
answers
4.2k
views
2
answers
STAR genome index with and/or with out *.gtf annotation
gtf alignment star rna-seq bowtie written 2.3 years ago by kirannbishwa01 • 860 • updated 8 weeks ago by drskm7 • 0
4
votes
0
answers
234
views
7 follow
0
answers
FeatureCounts on HG38
refseq star rna-seq hg19 written 9 weeks ago by elb • 110 • updated 9 weeks ago by h.mon ♦ 19k
3
votes
1
answer
131
views
1
answer
How to get ungapped single-end reads from the STAR output bam file?
ungapped star single-end rna-seq written 9 weeks ago by caggtaagtat • 290 • updated 9 weeks ago by Pierre Lindenbaum ♦ 112k
4
votes
1
answer
235
views
1
answer
Building STAR genome index continually killed
star rna-seq index written 10 weeks ago by Sa • 0 • updated 10 weeks ago by biocyberman • 760
2
votes
1
answer
172
views
1
answer
STAR index preparation fails
star rna-seq written 10 weeks ago by prabin.dm • 10 • updated 10 weeks ago by h.mon ♦ 19k
3
votes
0
answers
331
views
0
answers
STAR alignment error- Segmentation fault (core dumped)
software error alignment star rna-seq written 11 weeks ago by EagleEye ♦ 5.7k
0
votes
0
answers
104
views
0
answers
qualimap transcript coverage profile truncated in smRNA-seq( ENCODE PIPELINE)
qaulimap2 smrna-seq star written 11 weeks ago by woongjaej • 10
4
votes
0
answers
295
views
0
answers
STAR ERROR: could not open genomeParameters.txt / How to increase RAM?
star rna-seq written 12 weeks ago by salamandra • 170
1
vote
1
answer
271
views
1
answer
STAR alignment error: Genome_genomeGenerate.cpp:208:genomeGenerate: exiting because of *OUTPUT FILE* error: could not create output file ./GenomeDir/
star rna-seq written 12 weeks ago by salamandra • 170
3
votes
3
answers
535
views
5 follow
3
answers
Fasta file and GTF file for STAR alignment
ensembl star written 3 months ago by snp87 • 40 • updated 3 months ago by swbarnes2 ♦ 4.0k
1
vote
2
answers
432
views
2
answers
STAR-RNA Segmentation Fault
debian segmentation error star rna-seq mapping written 3 months ago by Poetic_Premium6 • 0 • updated 3 months ago by Jeffin Rockey • 690
5
votes
1
answer
438
views
1
answer
STAR for chip-seq
alignment chip-seq star written 3 months ago by varsha619 • 70 • updated 3 months ago by predeus • 630
0
votes
0
answers
176
views
0
answers
Inaccurate read counts when genome/annotation contains alternate loci
htseq-count star rna-seq alternative loci written 3 months ago by viktorfeketa • 0
3
votes
1
answer
404
views
1
answer
STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
gene expression ht-seq star rsem rna-seq written 4 months ago by CY • 190
2
votes
1
answer
312
views
1
answer
Only 1% of reads are used as "input reads" in STAR
mapping star input rna-seq written 4 months ago by caggtaagtat • 290
4
votes
1
answer
229
views
1
answer
Warnings while generating STAR indices
star rna-seq written 4 months ago by skhan • 10 • updated 4 months ago by Devon Ryan ♦ 84k
6
votes
2
answers
459
views
5 follow
2
answers
STAR options for RNA Seq
star rna seq written 4 months ago by skhan • 10 • updated 4 months ago by swbarnes2 ♦ 4.0k
4
votes
1
answer
711
views
1
answer
rsem calculate expression using STAR. Reference genome format?
star rsem written 4 months ago by dtatarak • 10
2
votes
1
answer
377
views
1
answer
STAR Index output: exonGeTrInfo.tab
star rna-seq written 4 months ago by cgias • 0 • updated 4 months ago by h.mon ♦ 19k
13
votes
0
answers
1.7k
views
8 follow
0
answers
STAR align multiple files
alignment chip-seq star rna-seq written 11 months ago by ta_awwad • 150 • updated 4 months ago by Bog • 20
2
votes
3
answers
768
views
3
answers
Hard vs soft masked references while aligning with STAR
star hard masking written 9 months ago by jea.anna • 10 • updated 5 months ago by jfaberha • 0
0
votes
0
answers
348
views
0
answers
STAR Unmapped reads
unmapped reads alignment star rna-seq written 5 months ago by prathyushareddy87 • 0
1
vote
1
answer
221
views
5 follow
1
answer
comparing mapping statistics on s. pombe alignment (Star vs. tophat)
tophat alignment rna-seq pombe star written 5 months ago by dho322 • 0 • updated 5 months ago by Michael Dondrup ♦ 44k
1
vote
1
answer
202
views
1
answer
strange htseq-count result
rna-seq htsesq-count star written 5 months ago by lilingjoyo • 10 • updated 5 months ago by Macspider • 2.5k
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