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<prev • 208 results • page 1 of 7 • next >
2
votes
1
answer
1.3k
views
1
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input for rMATS
rmats star rna-seq written 12 months ago by bisht20diksha • 10 • updated 3 days ago by iti.gupta • 0
0
votes
1
answer
93
views
1
answer
STAR+Cufflinks for RNA-Seq analysis
cufflinks star rna-seq written 9 days ago by wangdp123 • 140 • updated 9 days ago by Istvan Albert ♦♦ 79k
0
votes
1
answer
573
views
1
answer
same transcript id with STAR quant mode
gtf star rna-seq written 14 months ago by grant.hovhannisyan • 1.4k • updated 18 days ago by manuel.belmadani • 450
5
votes
1
answer
133
views
1
answer
Hi-C data alignment with star
hi-c star written 26 days ago by Dataminer • 2.6k • updated 26 days ago by Gautier Richard • 230
4
votes
1
answer
158
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5 follow
1
answer
Problem in running STAR
rnaseq star written 29 days ago by majeedaasim • 30
4
votes
1
answer
184
views
6 follow
1
answer
Alignment loop using STAR
alignment star rna-seq written 5 weeks ago by lamia_203 • 30 • updated 5 weeks ago by swbarnes2 ♦ 4.8k
1
vote
1
answer
173
views
1
answer
Infer experiment - Failed to determine strandin paired end stranded RNA-seq
hisat2 paired end star rna-seq stranded written 11 weeks ago by GiusiG • 0 • updated 8 weeks ago by michael.ante • 3.0k
3
votes
1
answer
227
views
1
answer
STAR Splice Junctions normalization
star rna-seq written 9 weeks ago by Bastien Hervé ♦ 3.3k
5
votes
0
answers
184
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5 follow
0
answers
Terrible RNA mapping result by STAR
star rna-seq written 9 weeks ago by 610225668 • 0
2
votes
1
answer
257
views
5 follow
1
answer
Read count difference between STAR and Bowtie
smallrna mirna-seq bowtie star written 9 weeks ago by hothriananya • 50 • updated 9 weeks ago by ATpoint ♦ 13k
2
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0
answers
125
views
0
answers
RSEM with STAR aligment
star rsem written 9 weeks ago by prabin.dm • 30
1
vote
0
answers
219
views
0
answers
STAR two -pass mode - lower alignment rate than one pass mode?
two pass mode alignment star written 9 weeks ago by Biogeek • 340
0
votes
2
answers
204
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2
answers
Do STAR genome index and RSEM reference need to be from same files?
rna-seq rsem star written 10 weeks ago by prabin.dm • 30 • updated 10 weeks ago by WouterDeCoster ♦ 36k
2
votes
1
answer
176
views
1
answer
STAR alignment error: quantmod not found
rnaseq alignment star written 10 weeks ago by prabin.dm • 30 • updated 10 weeks ago by Devon Ryan ♦ 88k
10
votes
1
answer
308
views
6 follow
1
answer
STAR alignment error: ERROR in input reads
fastq star rna-seq written 10 weeks ago by prabin.dm • 30
2
votes
1
answer
202
views
1
answer
STAR Create Custom Refence Genome
star rna-seq written 10 weeks ago by b.verhagen • 0
0
votes
0
answers
120
views
0
answers
RSEM BAM outputs, which one to use for RSeQC?
bam star rsem rseqc written 10 weeks ago by Freek • 10
1
vote
0
answers
255
views
0
answers
Genome Index and Alignment- STAR
genome alignment star rna-seq written 11 weeks ago by carolgalah • 0 • updated 11 weeks ago by Kevin Blighe ♦ 37k
1
vote
0
answers
169
views
0
answers
the lower unique mapping rate after Trimming
trimmomatic star rna-seq written 11 weeks ago by lilingjoyo • 30
1
vote
0
answers
306
views
0
answers
% of reads unmapped: too short - STAR 2.5.2b
alignment star rna-seq written 3 months ago by quan.clement • 0
21
votes
4
answers
3.3k
views
10 follow
4
answers
what do the headers of the rMATS output files mean?
next-gen star mats alternative splicing written 20 months ago by atcggcta • 20 • updated 3 months ago by drskm7 • 0
0
votes
0
answers
129
views
0
answers
SC-RNASeq data mappability with STAR
star rna-seq written 3 months ago by pyKey • 40
3
votes
0
answers
304
views
0
answers
Set the insert size threshold in STAR
star rna-seq written 5 months ago by alvarocentron91 • 0 • updated 3 months ago by Biostar ♦♦ 20
2
votes
2
answers
223
views
2
answers
cause of unmapped short with STAR
star rna-seq written 3 months ago by lkianmehr • 30 • updated 3 months ago by swbarnes2 ♦ 4.8k
4
votes
1
answer
246
views
1
answer
STAR quantMode geneCounts: weird outcomes
htseq-count star rna-seq written 3 months ago by davide.chiarugi • 20
0
votes
1
answer
284
views
1
answer
STAR RNA-seq aligned output ReadsPerGene.out.tab
star differential expression analysis rna-seq written 3 months ago by Boboboe • 10 • updated 3 months ago by h.mon ♦ 23k
3
votes
1
answer
410
views
1
answer
best pipeline to get gene and transcript counts
count alignment star rna-seq hisat2 written 3 months ago by lkianmehr • 30 • updated 3 months ago by t.blasco95 • 30
3
votes
0
answers
279
views
0
answers
5', 3' SS and Intron retention read count using STAR out.tab
star rna-seq alternative splicing written 4 months ago by thindmarsmission • 0
2
votes
1
answer
173
views
1
answer
how many index has to be constructed by STAR for TE analysis
tetoolkit star index written 4 months ago by lkianmehr • 30 • updated 4 months ago by h.mon ♦ 23k
1
vote
0
answers
191
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5 follow
0
answers
To fetch the reads which are being partially mapped to the genome
jvarkit hisat2 star rna-seq bowtie2 written 4 months ago by swadha • 20 • updated 4 months ago by genomax ♦ 62k
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