Showing: starreset
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2
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1
answer
76
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1
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RNA STAR error on Gallaxy
star written 22 hours ago by yelekley70 • updated 22 hours ago by Devon Ryan71k
2
votes
1
answer
74
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1
answer
STAR/ Bowtie2: number of matched base
bowtie2 ngs alignment star written 1 day ago by Chris_AI20 • updated 1 day ago by Devon Ryan71k
2
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5
answers
818
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5
answers
rRNA detection (for contamination) in RNA-seq
next-gen alignment star rna-seq written 13 months ago by Ron600 • updated 8 days ago by Charles Plessy2.2k
9
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0
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221
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5 follow
0
answers
5
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3
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287
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3
answers
what do the headers of the rMATS output files mean?
next-gen star mats alternative splicing written 4 months ago by atcggcta0 • updated 13 days ago by Rose0
12
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2
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2.7k
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2
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RNA-seq: Explain STAR quantMode geneCounts values
star rna-seq differential expression written 11 months ago by williantafsilva90 • updated 15 days ago by neokao0
2
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2
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334
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5 follow
2
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ATACseq with STAR and macs2
macs2 dmrs atac-seq star written 11 weeks ago by Ice P0 • updated 27 days ago by simon.vanheeringen40
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0
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139
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0
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1
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0
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175
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0
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45
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2
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2.9k
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26 follow
2
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Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 11 weeks ago by sonpham320 • updated 6 weeks ago by y.divyatej10
7
votes
2
answers
327
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5 follow
2
answers
weird STAR output, bash scripting problem
star rna-seq bash written 7 weeks ago by nikelle.petrillo70 • updated 7 weeks ago by h.mon9.0k
0
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0
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128
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0
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1
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3
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376
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3
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bash script for RNA seq alignment with STAR
bash star rna-seq script written 9 weeks ago by nicole p0 • updated 7 weeks ago by mforde84940
2
votes
1
answer
252
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1
answer
Does STAR identify new splicing?
alignment star rna-seq written 10 weeks ago by zhangzhenyusz20 • updated 10 weeks ago by h.mon9.0k
0
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0
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199
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0
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1
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0
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610
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0
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choosing a suitable max intron size for STAR (plant alignment)
intron size plants star written 14 months ago by Biogeek240 • updated 12 weeks ago by claudiorivero920
0
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0
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186
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0
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2
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1
answer
176
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1
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Mapping Quality of reads with mismatches in STAR
rnaseq star mapq written 12 weeks ago by grant.hovhannisyan260 • updated 12 weeks ago by Devon Ryan71k
5
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0
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257
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5 follow
0
answers
0
votes
0
answers
249
views
0
answers
2
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0
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283
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0
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STAR Aligner Suddently changed output file???
unix alignment rna 2pass star written 3 months ago by jack.baines20 • updated 3 months ago by h.mon9.0k
0
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0
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198
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0
answers
0
votes
1
answer
225
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1
answer
unexpectedly low speed of STAR aligner
star rna-seq written 3 months ago by nfursova.msu0 • updated 3 months ago by Devon Ryan71k
3
votes
1
answer
200
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1
answer
STAR Indexing problems with unassambled vertebrate genomes
gtf star rna-seq written 4 months ago by sergio.espeso-gil0 • updated 3 months ago by colindaven340
0
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1
answer
168
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1
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What happens during seed stitching when STAR initially gets the wrong MMP?
star rna-seq written 4 months ago by eric.kern1390 • updated 4 months ago by Santosh Anand3.0k
4
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2
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288
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6 follow
2
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STAR genomeLoad overlap conflict
genomeload cluster star rna-seq written 4 months ago by cakesebastian0 • updated 4 months ago by h.mon9.0k
6
votes
2
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381
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5 follow
2
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Mapping RNA-Seq data on genome from another species
genome hisat2 star rna-seq mapping written 5 months ago by tlorin200 • updated 5 months ago by Brian Bushnell14k
6
votes
1
answer
330
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1
answer
Cannot Generate Genome from RNA Transcript in STAR
genomegenerate star rna-seq written 5 months ago by rekren10 • updated 5 months ago by Santosh Anand3.0k
2
votes
1
answer
252
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1
answer
"Spikey" RNA-Seq coverage
alignment star rna-seq written 5 months ago by Walter Baumann0 • updated 5 months ago by Macspider1.5k
8
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2
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222
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2
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How can I only took the mapped ones from STAR ?
genome star rna-seq samunmapped written 6 months ago by rekren10 • updated 6 months ago by andrew.j.skelton733.9k
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