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<prev • 320 results • page 1 of 11 • next >
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Preventing alignment to new Splice Junctions with STAR
splice-junctions alignment sequence star written 6 days ago by MarVi • 20 • updated 5 days ago by benformatics • 2.0k
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86
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RNAseq variant calling: STAR align promotes mismatched overhanging mappings onto introns instead of calling splicing junctions
splicing junction star rna-seq written 12 days ago by Francesco • 10
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2
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789
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7 follow
2
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Fusion detection tool error (STAR-fusion, STAR-SEQR,arriba)
ctat fusion detection star arriba rna-seq written 11 months ago by lucas.caue.jacintho • 30 • updated 14 days ago by kkatoibaraki • 10
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88
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running salmon on bam files
salmon star collate written 14 days ago by inah • 0 • updated 14 days ago by genomax ♦ 91k
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135
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STAR index file for GRCH37
software error star written 20 days ago by bioinformatics.queries • 0
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113
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alignment with STAR for loop multiples files
alignment star rna-seq written 26 days ago by eridanus • 0 • updated 26 days ago by genomax ♦ 91k
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191
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6 follow
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Tutorial: STARsolo config for 10x Chromium v1, v2, v3
10x tutorial starsolo chromium star written 28 days ago by regmkbl ♦ 66k
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2
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133
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5 follow
2
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I need help with Starsolo and scRNA-seq
scrna-seq starsolo star rna-seq written 28 days ago by rafaelsolersanblas • 20
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265
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7 follow
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RNASeq data: STAR low alignment score
genome alignment star rna-seq written 7 weeks ago by Manoj • 80 • updated 4 weeks ago by Biostar ♦♦ 20
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110
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Generation of indexed genome for two organisms using STAR
gtf annotation star rna-seq written 6 weeks ago by franziska.hildebrandt • 0
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100
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QC with RNA-SeQC output weird
alignment quality control rna-seq star written 6 weeks ago by koaeb • 10
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1
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172
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1
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STAR parameters in OmicsBox
parameters star omicsbox written 7 weeks ago by phamh • 0 • updated 7 weeks ago by swbarnes2 ♦ 8.8k
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161
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lower exon percentage
alignment paired-end qualimap star rna-seq written 8 weeks ago by anubratadas • 0
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171
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5 follow
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sbacth on multiple fastq files sequentially
alignment star rna-seq written 8 weeks ago by Kai_Qi • 100
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166
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How to map the RNA-seq reads to the genes with various intron length on genome using STAR?
genome alignment star rna-seq written 8 weeks ago by karta2194512 • 0
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2
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161
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2
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Using rsem-calculate-expression and STAR: invalid number of arguments?
transcript quantification star rsem written 8 weeks ago by mccatamura • 0 • updated 8 weeks ago by zorbax • 210
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141
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star --readFilesIn error when using unmapped.out.mate1/2 files
star rna-seq written 10 weeks ago by kokoko • 0
2
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1
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171
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1
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RNA-seq STAR genome mapping
star rna-seq linux written 10 weeks ago by waaaaaa • 0 • updated 10 weeks ago by Zhilong Jia • 1.6k
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1.6k
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How to tackle low reads in RNA-Seq data and compute differential expression
rna-seq rsem star written 4.4 years ago by Dataminer • 2.7k • updated 11 weeks ago by Biostar ♦♦ 20
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193
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Issues with STAR aligner install
alignment star rna-seq written 3 months ago by leonmcswain • 10 • updated 3 months ago by h.mon ♦ 31k
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155
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How to create SJ.out.tab files from bam files
alignment star rna-seq written 3 months ago by freeustand • 0
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168
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STAR multiple FASTQ alignment, can you use with a variable $?
alignment variable star rna-seq bash written 3 months ago by science_lizard • 0
2
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1
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127
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1
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STAR index/alignment error : no exons found
star rna-seq written 3 months ago by sandeep.amberkar18 • 50 • updated 3 months ago by caggtaagtat • 1.3k
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2
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STAR using splice junctions from SJ.out to find flanking exons (GRCh37)
gtf sj.out grch37 star rna-seq written 2.8 years ago by stefanos.bamopoulos • 40 • updated 3 months ago by MirkoR • 0
2
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1
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156
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1
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Mapping reads to combined mouse and human genome
alignment star rna-seq written 3 months ago by biostarukha • 10 • updated 3 months ago by genomax ♦ 91k
8
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1
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297
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7 follow
1
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Transcript level counts from full length scRNA data
scrna salmon star rna-seq written 4 months ago by geek_y ♦ 11k
1
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1
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179
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1
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Howcomplete STAR annotation with NCBI Genebank
ncbi star rna-seq written 4 months ago by emilie.derisoud • 0
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246
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Star VS hisat2 for splicing reads
rnaseq splicing star hisat2 written 4 months ago by Buffo • 1.8k
3
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1
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298
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1
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How to generate a mouse reference genome in STAR?
genome mouse alignment star rna-seq written 4 months ago by biostarukha • 10 • updated 4 months ago by khorms • 130
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1
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STAR/ Bowtie2: number of matched base
bowtie2 ngs alignment star written 3.0 years ago by ResearchR • 80
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