Showing: starreset
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question about the equation of counts in STAR ReadsPerGene.out.tab
readspergene.out.tab star written 5 days ago by boymin202020 • updated 22 hours ago by h.mon28k
3
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2
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6 follow
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Allele Specific Expression Analysis
x chromosome snp star rna-seq allele specific written 14 months ago by Susmita Mandal60 • updated 3 days ago by ta_awwad230
3
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1
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192
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6 follow
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2
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1
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81
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1
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How to get transcripts counts from STAR
deseq2 star rna-seq written 22 days ago by Triple Nipple0 • updated 22 days ago by h.mon28k
2
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1
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92
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1
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0
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1
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115
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hg38 premade index for STAR Aligner
alignment star rna-seq written 5 weeks ago by kratnasiri0 • updated 5 weeks ago by finswimmer13k
9
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1
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223
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6 follow
1
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Running STAR with --twopassMode Basic
star rna-seq ulimit written 6 weeks ago by lucas.caue.jacintho30 • updated 5 weeks ago by caggtaagtat900
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96
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STAR mapping statistics don't add up with samtools count
read count pe samtools star se written 6 weeks ago by Zee_S50 • updated 6 weeks ago by lieven.sterck6.4k
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117
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194
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How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
hisat tophat alignment star rna-seq written 12 weeks ago by CY460 • updated 8 weeks ago by Biostar ♦♦ 20
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219
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7 follow
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5
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Non-ascii characters in bam file cause htseq-count error
htseq-count star rna-seq written 9 weeks ago by loui_0 • updated 9 weeks ago by swbarnes27.0k
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232
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4
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1
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141
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2
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1
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242
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Difference between read counts STAR vs featureCounts
featurecounts star rna-seq multimapped written 10 weeks ago by sg19710 • updated 10 weeks ago by h.mon28k
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260
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4
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Genome vs transcriptome alignement in STAR
star rna-seq written 11 weeks ago by roy.granit810 • updated 11 weeks ago by grant.hovhannisyan1.8k
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301
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2
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How I deal with raw read counts of RNA-seq
deseq2 star rna-seq written 3 months ago by A3.6k • updated 3 months ago by swbarnes27.0k
4
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0
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STAR - genome indexes generation, genome file not created
star rna-seq written 3.1 years ago by lu.ne70 • updated 3 months ago by Biostar ♦♦ 20
16
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4
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345
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7 follow
4
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How I deal with different lanes in RNA-seq alignment
alignment star rna-seq written 3 months ago by A3.6k • updated 3 months ago by leaodel110
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2
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307
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featureCounts error with 150bp Paired end RNA seq data
ngs featurecounts paired-end rna-seq star written 4 months ago by ankuresearch10 • updated 3 months ago by swbarnes27.0k
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211
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1
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154
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When (not to) pre-build a STAR index
genome-index star written 4 months ago by jhanks198110 • updated 4 months ago by Thibault D.680
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219
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1
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1
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1
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296
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How to access STAR index loaded into shared memory
alignment star rna-seq written 5 months ago by paulranum1140 • updated 4 months ago by Artem Kiselev20
5
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321
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5 follow
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>99% unmapped reads
star rna-seq written 5 months ago by RPuni0 • updated 5 months ago by swbarnes27.0k
11
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4
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582
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6 follow
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Dealing with 1000's of demultiplexed fastq files
zumis star umi-tools written 8 months ago by volvicpellegrino0 • updated 5 months ago by Lior Pachter460
13
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2
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298
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2
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What are the best set of options to use while aligning using STAR?
ngs alignment star rna-seq written 6 months ago by gprashant1770 • updated 5 months ago by Charles Warden7.5k
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