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<prev • 102 results • page 1 of 4 • next >
0
votes
1
answer
99
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1
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unexpectedly low speed of STAR aligner
star rna-seq written 1 day ago by nfursova.msu • 0 • updated 1 day ago by Devon Ryan ♦ 68k
3
votes
1
answer
111
views
1
answer
STAR Indexing problems with unassambled vertebrate genomes
gtf star rna-seq written 8 days ago by sergio.espeso-gil • 0 • updated 6 days ago by colindaven • 200
0
votes
0
answers
58
views
0
answers
what do the headers of the rMATS output files mean?
next-gen star mats alternative splicing written 20 days ago by atcggcta • 0
0
votes
1
answer
77
views
1
answer
What happens during seed stitching when STAR initially gets the wrong MMP?
star rna-seq written 23 days ago by eric.kern13 • 70 • updated 23 days ago by Santosh Anand • 2.3k
4
votes
2
answers
139
views
6 follow
2
answers
STAR genomeLoad overlap conflict
genomeload cluster star rna-seq written 28 days ago by cakesebastian • 0 • updated 28 days ago by h.mon ♦ 6.6k
5
votes
2
answers
175
views
2
answers
Mapping RNA-Seq data on genome from another species
genome hisat2 star rna-seq mapping written 5 weeks ago by tlorin • 160 • updated 5 weeks ago by Brian Bushnell ♦ 12k
6
votes
1
answer
134
views
1
answer
Cannot Generate Genome from RNA Transcript in STAR
genomegenerate star rna-seq written 7 weeks ago by rekren • 10 • updated 7 weeks ago by Santosh Anand • 2.3k
2
votes
1
answer
171
views
1
answer
"Spikey" RNA-Seq coverage
alignment star rna-seq written 8 weeks ago by Walter Baumann • 0 • updated 8 weeks ago by Macspider • 1.2k
8
votes
2
answers
148
views
2
answers
How can I only took the mapped ones from STAR ?
genome star rna-seq samunmapped written 9 weeks ago by rekren • 10 • updated 9 weeks ago by andrew.j.skelton73 • 3.3k
7
votes
1
answer
179
views
5 follow
1
answer
STAR command gets Killed
star mapping written 10 weeks ago by cakesebastian • 0
3
votes
1
answer
221
views
1
answer
STAR Alignment Trouble
alignment star rna-seq written 11 weeks ago by atcggcta • 0 • updated 11 weeks ago by Sergey Naumenko • 70
1
vote
1
answer
191
views
1
answer
Have you ever seen perfect (100%) mapping rate (RNASeQC) on human RNASeq (hg38) using STAR?
alignment hg38 star rna-seq written 11 weeks ago by mark.ebbert • 0 • updated 11 weeks ago by h.mon ♦ 6.6k
8
votes
1
answer
365
views
1
answer
Can STAR work with compressed .gz FASTQ input?
compressed fastq gz star alignment written 3 months ago by cristian • 50 • updated 3 months ago by Santosh Anand • 2.3k
1
vote
1
answer
232
views
1
answer
Long Read Length, yet STAR says many reads too short
single-cell alignment star rna-seq written 3 months ago by dec986 • 20 • updated 3 months ago by datascientist28 • 270
0
votes
0
answers
145
views
0
answers
Chromosome Names in genome are incompatible with annotations
alignment star written 3 months ago by serpalma.v • 10
0
votes
1
answer
160
views
1
answer
basic concepts behind --sjdbOverhang (STAR)
star sjdboverhang written 3 months ago by serpalma.v • 10
5
votes
0
answers
243
views
0
answers
Trimmomatic -> STAR
trimmomatic star rna-seq written 3 months ago by xd_d • 40
0
votes
2
answers
459
views
2
answers
Please adivse me on differential expression analysis on the STAR/Stringtie output
count stringtie star differential expression edger written 4 months ago by seta • 890 • updated 3 months ago by dunhamcg • 0
14
votes
2
answers
616
views
2
answers
Difference between GTF file with CHR and without CHR. ENSEMBL
ensembl star rna-seq written 8 months ago by rf • 10 • updated 3 months ago by Emily_Ensembl ♦ 11k
0
votes
1
answer
213
views
1
answer
Error indexing genome with STAR
software error alignment star rna-seq written 3 months ago by zubenel • 0 • updated 3 months ago by WouterDeCoster ♦ 19k
0
votes
0
answers
153
views
0
answers
Different mapping rate for tophat+mm9 vs star+mm10
mm9 mm10 tophat star rna-seq written 3 months ago by Ice P • 0
1
vote
1
answer
264
views
1
answer
Can I merge fastq files of a same sample from two sequencers for gene expression analysis?
gene expression star rna-seq written 4 months ago by Megan • 20 • updated 4 months ago by Petr Ponomarenko • 2.4k
0
votes
0
answers
236
views
5 follow
0
answers
STAR output processing
ase star rna-seq written 4 months ago by kintany • 0
0
votes
0
answers
840
views
0
answers
How do you normalize Transcript per Million TPM to compare between samples ?
tpm quantification salmon star rna-seq written 5 months ago by ZheFrench • 30
4
votes
1
answer
372
views
1
answer
Alignment stats summary by STAR aligner, please help!
alignment qc star rna-seq written 5 months ago by Jackie • 40
2
votes
0
answers
448
views
0
answers
RNA seq analysis using STAR+StringTie
stringtie star rna-seq written 5 months ago by fatima • 0
0
votes
1
answer
316
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1
answer
deseq dataset from star
deseq2 star rna-seq written 5 months ago by Pals • 1.3k • updated 5 months ago by bruce.moran • 210
0
votes
0
answers
340
views
0
answers
Cuffmerge and cuffdiff on bam file generated by STAR alignment
alignment cuffdiff star written 5 months ago by oriolebaltimore • 20
1
vote
0
answers
283
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0
answers
Producing transcriptomic bam with STAR with all sam attributes
star rna-seq written 6 months ago by rubic • 130 • updated 6 months ago by Goutham Atla ♦ 7.2k
1
vote
1
answer
335
views
1
answer
Quantification of Maps to rRNA and mtDNA
rrna alignment star mtrna rna-seq written 6 months ago by dec986 • 20 • updated 6 months ago by Devon Ryan ♦ 68k
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