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<prev • 113 results • page 1 of 4 • next >
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bash script for RNA seq alignment with STAR
bash star rna-seq script written 8 days ago by nicole p • 0 • updated 8 days ago by Michael Dondrup ♦ 42k
43
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2
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2.2k
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26 follow
2
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Tool: Hera: A new tool for RNA-Seq analysis
star gene fusion tool rna-seq kallisto written 22 days ago by sonpham • 310 • updated 13 days ago by y.divyatej • 0
2
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1
answer
167
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1
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Does STAR identify new splicing?
alignment star rna-seq written 14 days ago by zhangzhenyusz • 20 • updated 14 days ago by h.mon ♦ 8.0k
1
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0
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209
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ATACseq with STAR and macs2
macs2 dmrs atac-seq star written 21 days ago by Ice P • 0
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0
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126
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Read counts of STAR with gff file
gff read-counts star written 22 days ago by grant.hovhannisyan • 120
1
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0
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508
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choosing a suitable max intron size for STAR (plant alignment)
intron size plants star written 12 months ago by Biogeek • 240 • updated 22 days ago by claudiorivero92 • 0
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0
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143
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STAR parameters in plants genomes
plant star rna-seq written 22 days ago by claudiorivero92 • 0
2
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1
answer
117
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1
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Mapping Quality of reads with mismatches in STAR
rnaseq star mapq written 25 days ago by grant.hovhannisyan • 120 • updated 25 days ago by Devon Ryan ♦ 70k
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171
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5 follow
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Problem building reference genome using STAR
star transcriptome written 4 weeks ago by ashish • 110
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159
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0
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Genome guided assembly with Trinity using STAR genome index
trinity star rna-seq written 4 weeks ago by nikelle.petrillo • 70
2
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0
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203
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STAR Aligner Suddently changed output file???
unix alignment rna 2pass star written 5 weeks ago by jack.baines2 • 0 • updated 5 weeks ago by h.mon ♦ 8.0k
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144
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0
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STAR/StringTie compatibility on tag HI in the BAM alignment file
stringtie star written 6 weeks ago by Megan • 30
0
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1
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175
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1
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unexpectedly low speed of STAR aligner
star rna-seq written 7 weeks ago by nfursova.msu • 0 • updated 7 weeks ago by Devon Ryan ♦ 70k
3
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1
answer
151
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1
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STAR Indexing problems with unassambled vertebrate genomes
gtf star rna-seq written 8 weeks ago by sergio.espeso-gil • 0 • updated 8 weeks ago by colindaven • 260
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104
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what do the headers of the rMATS output files mean?
next-gen star mats alternative splicing written 10 weeks ago by atcggcta • 0
0
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1
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117
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1
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What happens during seed stitching when STAR initially gets the wrong MMP?
star rna-seq written 10 weeks ago by eric.kern13 • 90 • updated 10 weeks ago by Santosh Anand • 2.8k
4
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2
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202
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6 follow
2
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STAR genomeLoad overlap conflict
genomeload cluster star rna-seq written 11 weeks ago by cakesebastian • 0 • updated 11 weeks ago by h.mon ♦ 8.0k
6
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2
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259
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5 follow
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Mapping RNA-Seq data on genome from another species
genome hisat2 star rna-seq mapping written 3 months ago by tlorin • 170 • updated 3 months ago by Brian Bushnell ♦ 13k
6
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1
answer
212
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1
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Cannot Generate Genome from RNA Transcript in STAR
genomegenerate star rna-seq written 3 months ago by rekren • 10 • updated 3 months ago by Santosh Anand • 2.8k
2
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1
answer
207
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1
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"Spikey" RNA-Seq coverage
alignment star rna-seq written 3 months ago by Walter Baumann • 0 • updated 3 months ago by Macspider • 1.2k
8
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2
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183
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2
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How can I only took the mapped ones from STAR ?
genome star rna-seq samunmapped written 4 months ago by rekren • 10 • updated 4 months ago by andrew.j.skelton73 • 3.6k
7
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1
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219
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5 follow
1
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STAR command gets Killed
star mapping written 4 months ago by cakesebastian • 0
3
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1
answer
301
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1
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STAR Alignment Trouble
alignment star rna-seq written 4 months ago by atcggcta • 0 • updated 4 months ago by Sergey Naumenko • 170
1
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1
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226
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1
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Have you ever seen perfect (100%) mapping rate (RNASeQC) on human RNASeq (hg38) using STAR?
alignment hg38 star rna-seq written 4 months ago by mark.ebbert • 0 • updated 4 months ago by h.mon ♦ 8.0k
8
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1
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601
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1
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Can STAR work with compressed .gz FASTQ input?
compressed fastq gz star alignment written 4 months ago by cristian • 70 • updated 4 months ago by Santosh Anand • 2.8k
1
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1
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308
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1
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Long Read Length, yet STAR says many reads too short
single-cell alignment star rna-seq written 4 months ago by dec986 • 20 • updated 4 months ago by datascientist28 • 290
0
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0
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179
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Chromosome Names in genome are incompatible with annotations
alignment star written 5 months ago by serpalma.v • 10
0
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1
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199
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1
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basic concepts behind --sjdbOverhang (STAR)
star sjdboverhang written 5 months ago by serpalma.v • 10
5
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284
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Trimmomatic -> STAR
trimmomatic star rna-seq written 5 months ago by xd_d • 60
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2
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584
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2
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Please adivse me on differential expression analysis on the STAR/Stringtie output
count stringtie star differential expression edger written 6 months ago by seta • 920 • updated 5 months ago by dunhamcg • 0
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