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The two mates do not align to a same transcript -- RSEM error
star rsem rna-seq written 2 days ago by abhilashkannan2987 • 0
4
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1
answer
55
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1
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STAR --quantMode GeneCounts vs HTSeq-count
htseq next-gen star rna-seq sequencing written 2 days ago by Uday Rangaswamy • 150 • updated 2 days ago by h.mon ♦ 32k
4
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1
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158
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1
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How to remove X & Y chromosome genes from RNAseq data
deseq2 featurecounts star rna-seq written 13 days ago by archit22684 • 0
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1
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71
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1
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How do I see my log.progress.out file
fastq star terminal rna-seq written 5 days ago by maria.faleeva • 0
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1
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66
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1
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Any idea on how long fastq mapping takes in STAR?
fastq star rna-seq mapping written 5 days ago by maria.faleeva • 0
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61
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5 follow
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EXITING: because of fatal INPUT file error: could not open read file
genome fastq star mapping written 6 days ago by merfer0206 • 0
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82
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Using STAR to map fastq files: EXITING: because of fatal INPUT ERROR: number of input files for mate3=1 is not equal to that for mate1=3
genome fastq star sequencing written 6 days ago by merfer0206 • 0
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0
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104
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5 follow
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STAR aligner index generating issues
genome alignment star rna-seq written 8 days ago by Uday Rangaswamy • 150
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1
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89
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Hardware requirements for bowtie2/STAR RNA-seq alignment
illumina bowtie2 star bowtie rna-seq written 11 days ago by MatStat • 130
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2
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228
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STAR and StringTie to identify novel isoforms (please check my work)
stringtie gffcompare star novel isoforms rna-seq written 22 days ago by Jen • 0 • updated 22 days ago by rishikeshgour741 • 0
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166
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STAR mapping taking way too long (18hrs to complete ~60M PE reads)
star written 22 days ago by Jen • 0
3
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1
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172
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1
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Error in STAR when mapping
mapping star rna-seq genomereference written 5 weeks ago by luzglongoria • 40 • updated 5 weeks ago by Pierre Lindenbaum ♦ 133k
9
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1
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182
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1
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RNA-Seq junction reads overhang imbalance
star rna-seq splice junctions written 5 weeks ago by pavenhuizen • 90 • updated 5 weeks ago by i.sudbery ♦ 10k
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113
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1
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[STAR] How to clear memory after lost --genomeLoad
star memory written 7 weeks ago by mathieu.bahin • 50
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1
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114
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1
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Aligning multiple runs using STARSolo
single cell rnaseq alignment scrna star starsolo written 9 weeks ago by Apoorva • 270 • updated 9 weeks ago by ATpoint ♦ 44k
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1
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184
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1
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Calculate strand ratio for repeat (ALU) elements
alu transposons star repeatmasker written 10 weeks ago by A. Domingues • 2.4k
2
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1
answer
174
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1
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ATAC-seq problem with STAR - Multimapping reads
chip-seq atac-seq star written 9 weeks ago by rafaelsolersanblas • 20
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0
answers
132
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0
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Star RNA seq aligner issue:
bam star rna-seq written 9 weeks ago by play.tatha • 0
0
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0
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248
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How to map the RNA-seq reads to the genes with various intron length on genome using STAR?
genome alignment star rna-seq written 4 months ago by karta2194512 • 0 • updated 11 weeks ago by Biostar ♦♦ 20
0
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1
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140
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1
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Possibility of mapping opposite strand
fastq alignment star rna-seq written 11 weeks ago by dahun73 • 10 • updated 11 weeks ago by swbarnes2 ♦ 9.3k
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0
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187
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STAR aligner - multimaps vs. strandedness
ribosome profiling alignment star rna-seq riboseq written 12 weeks ago by cjag • 0
1
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1
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170
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1
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Preventing alignment to new Splice Junctions with STAR
splice-junctions alignment sequence star written 3 months ago by MarVi • 20 • updated 3 months ago by benformatics • 2.0k
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193
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RNAseq variant calling: STAR align promotes mismatched overhanging mappings onto introns instead of calling splicing junctions
splicing junction star rna-seq written 3 months ago by Francesco • 10
3
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2
answers
1.1k
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7 follow
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Fusion detection tool error (STAR-fusion, STAR-SEQR,arriba)
ctat fusion detection star arriba rna-seq written 14 months ago by lucas.caue.jacintho • 30 • updated 3 months ago by kkatoibaraki • 10
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295
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running salmon on bam files
salmon star collate written 3 months ago by inah • 0 • updated 3 months ago by GenoMax ♦ 94k
1
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1
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282
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1
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STAR index file for GRCH37
software error star written 3 months ago by bioinformatics.queries • 40
2
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0
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203
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alignment with STAR for loop multiples files
alignment star rna-seq written 3 months ago by eridanus • 20 • updated 3 months ago by GenoMax ♦ 94k
9
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0
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517
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6 follow
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Tutorial: STARsolo config for 10x Chromium v1, v2, v3
10x tutorial starsolo chromium star written 3 months ago by Kevin Blighe ♦ 69k
4
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2
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257
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5 follow
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I need help with Starsolo and scRNA-seq
scrna-seq starsolo star rna-seq written 3 months ago by rafaelsolersanblas • 20
3
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467
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7 follow
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RNASeq data: STAR low alignment score
genome alignment star rna-seq written 4 months ago by Manoj • 80 • updated 4 months ago by Biostar ♦♦ 20
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