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STAR using splice junctions from SJ.out to find flanking exons (GRCh37)
gtf sj.out grch37 star rna-seq written 2.5 years ago by stefanos.bamopoulos • 40 • updated 3 days ago by MirkoR • 0
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1
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59
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1
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Mapping reads to combined mouse and human genome
alignment star rna-seq written 5 days ago by biostarukha • 10 • updated 5 days ago by genomax ♦ 85k
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1
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102
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1
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Transcript level counts from full length scRNA data
scrna salmon star rna-seq written 16 days ago by geek_y ♦ 11k
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114
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Howcomplete STAR annotation with NCBI Genebank
ncbi star rna-seq written 18 days ago by emilie.derisoud • 0
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79
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Star VS hisat2 for splicing reads
rnaseq splicing star hisat2 written 19 days ago by Buffo • 1.8k
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96
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How to generate a mouse reference genome in STAR?
genome mouse alignment star rna-seq written 19 days ago by biostarukha • 10 • updated 19 days ago by khorms • 110
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STAR/ Bowtie2: number of matched base
bowtie2 ngs alignment star written 2.7 years ago by ResearchR • 70
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83
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Align to custom sequences using STAR aligner
star rna-seq written 4 weeks ago by roy.granit • 830
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325
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5 follow
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DEseq2 results differs greatly when comparing output from STAR/featureCounts and Salmon
deseq2 salmon star rna-seq written 5 weeks ago by testtube • 0 • updated 5 weeks ago by Rob ♦ 4.0k
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103
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splicing with UMI barcodes - paired end illumina sequencing
illumina umi umitools splicing star written 5 weeks ago by snishtala03 • 30
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1
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131
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1
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Calling Exon Skipping Events from RNA-Seq
fusion star rna-seq written 6 weeks ago by mrxcm3 • 40 • updated 6 weeks ago by gianluca.dellavedova • 50
1
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1
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246
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1
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STAR error (segmentation fault) in Aligning reads
reads ngs alignment variant star written 6 months ago by spriyansh29 • 30
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136
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5 follow
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GNU Parallel Number of Possible Threads
multithreading parallel gnu rna-seq star written 8 weeks ago by nickhir • 10 • updated 8 weeks ago by ATpoint ♦ 36k
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How can I filter and detect circular RNA aligned paired-end reads with star?
alignment circular rna star rna-seq sequencing written 10 weeks ago by ddierks91 • 0
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199
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Star alignment - AS and MD tags
ngs alignment sam format star sam alignment tags written 10 weeks ago by mickey_95 • 10
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137
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Counting uniquely mapped reads - ambiguous results
samtools view alignment samtools star mapping written 10 weeks ago by mickey_95 • 10 • updated 10 weeks ago by ATpoint ♦ 36k
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167
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Removing strandedness information for analysis RSEM/STAR/
transcriptomics rna star rsem rna-seq written 10 weeks ago by omicsnstuff • 0
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1
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136
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1
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Count exon-exon junction reads for transcripts
junctions star rna-seq written 11 weeks ago by robinycfang • 0 • updated 10 weeks ago by geek_y ♦ 11k
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198
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STAR genome index Error
star rna-seq index written 3 months ago by sallyey2 • 0 • updated 10 weeks ago by Biostar ♦♦ 20
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261
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featureCounts: Low % assigned fragments and discrepancy between STAR alignment multi mapped reads
subread next-gen featurecounts star rna-seq written 12 weeks ago by david.gonzalez • 10
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144
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Apply conditions to forward/reverse strands on BAM file (RNA-Seq)
paired-ends strands star bam rna-seq written 12 weeks ago by ek699 • 0
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212
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Normalization: Genome-guided de novo assembly with STAR and trinity
trinity star rna-seq genome-guided assembly written 12 weeks ago by lucask3 • 20 • updated 12 weeks ago by h.mon ♦ 30k
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166
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STAR Sjdboverhang value
star rna-seq written 3 months ago by sallyey2 • 0
6
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1
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139
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1
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Find a path to STAR
alignment star rna-seq written 3 months ago by sallyey2 • 0
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204
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What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
htseq salmon star filtering counts written 3 months ago by Gabriel • 60
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272
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Looking for prebuilt STAR index for hg19. STAR Genome site is down.
chip-seq star rna-seq written 3 months ago by syrez • 40
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1
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142
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1
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RNAseq STAR mapping with clipping
rnaseq clipping mapping star clip3pnbases written 3 months ago by asta.tranholm • 0 • updated 3 months ago by h.mon ♦ 30k
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1
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330
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5 follow
1
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RNAseq differential expression analysis results: Kallisto vs STAR
kallisto rna-seq star written 3 months ago by marcos.georgiades.18 • 10 • updated 3 months ago by Istvan Albert ♦♦ 84k
3
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1
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384
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1
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featureCounts does not summarise counts from added/reporter genes
subread featurecounts rsubread star rna-seq written 3 months ago by eduardogccm • 10
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164
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Merging output files from STAR
star rna-seq written 4 months ago by JW • 0 • updated 4 months ago by h.mon ♦ 30k
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