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<prev • 165 results • page 1 of 6 • next >
3
votes
3
answers
195
views
5 follow
3
answers
Fasta file and GTF file for STAR alignment
ensembl star written 25 days ago by snp87 • 30 • updated 18 days ago by swbarnes2 ♦ 3.6k
1
vote
2
answers
165
views
2
answers
STAR-RNA Segmentation Fault
debian segmentation error star rna-seq mapping written 21 days ago by Poetic_Premium6 • 0 • updated 20 days ago by Jeffin Rockey • 510
5
votes
1
answer
160
views
1
answer
STAR for chip-seq
alignment chip-seq star written 27 days ago by varsha619 • 70 • updated 27 days ago by predeus • 560
0
votes
0
answers
120
views
0
answers
Inaccurate read counts when genome/annotation contains alternate loci
htseq-count star rna-seq alternative loci written 4 weeks ago by viktorfeketa • 0
3
votes
1
answer
208
views
1
answer
STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
gene expression ht-seq star rsem rna-seq written 4 weeks ago by CY • 130
2
votes
1
answer
213
views
1
answer
Only 1% of reads are used as "input reads" in STAR
mapping star input rna-seq written 5 weeks ago by caggtaagtat • 230
1
vote
0
answers
153
views
0
answers
STAR index with NCBI files
rnaseq ncbi star index written 6 weeks ago by cgias • 0 • updated 6 weeks ago by genomax ♦ 50k
4
votes
1
answer
138
views
1
answer
Warnings while generating STAR indices
star rna-seq written 7 weeks ago by skhan • 10 • updated 7 weeks ago by Devon Ryan ♦ 81k
6
votes
2
answers
237
views
5 follow
2
answers
STAR options for RNA Seq
star rna seq written 7 weeks ago by skhan • 10 • updated 7 weeks ago by swbarnes2 ♦ 3.6k
2
votes
2
answers
180
views
2
answers
rsem calculate expression using STAR. Reference genome format?
star rsem written 7 weeks ago by dtatarak • 10
2
votes
1
answer
184
views
1
answer
STAR Index output: exonGeTrInfo.tab
star rna-seq written 7 weeks ago by cgias • 0 • updated 7 weeks ago by h.mon ♦ 15k
11
votes
0
answers
1.1k
views
6 follow
0
answers
STAR align multiple files
alignment chip-seq star rna-seq written 8 months ago by ta_awwad • 130 • updated 8 weeks ago by Bog • 20
2
votes
3
answers
443
views
3
answers
Hard vs soft masked references while aligning with STAR
star hard masking written 6 months ago by jea.anna • 10 • updated 8 weeks ago by jfaberha • 0
0
votes
0
answers
201
views
0
answers
STAR Unmapped reads
unmapped reads alignment star rna-seq written 8 weeks ago by prathyushareddy87 • 0
1
vote
1
answer
144
views
5 follow
1
answer
comparing mapping statistics on s. pombe alignment (Star vs. tophat)
tophat alignment rna-seq pombe star written 9 weeks ago by dho322 • 0 • updated 9 weeks ago by Michael Dondrup ♦ 44k
1
vote
1
answer
133
views
1
answer
strange htseq-count result
rna-seq htsesq-count star written 9 weeks ago by lilingjoyo • 10 • updated 9 weeks ago by Macspider • 2.4k
0
votes
0
answers
208
views
0
answers
Questions about STAR and Bowtie (not Bowtie2) mapping
bowtie star uniquely mapped reads rna-seq written 10 weeks ago by debitboro • 70 • updated 10 weeks ago by Ram ♦ 15k
17
votes
3
answers
6.6k
views
3
answers
RNA-seq: Explain STAR quantMode geneCounts values
star rna-seq differential expression written 20 months ago by williantafsilva • 120 • updated 11 weeks ago by Tao • 220
1
vote
0
answers
135
views
0
answers
Illegal instruction (core dumped) - Indexing a reference genome with STAR
indexing reference mapping rna-seq star written 12 weeks ago by raquelgarza95 • 0
5
votes
2
answers
247
views
2
answers
Which column to use from STAR output for Differential Gene Expression Analysis?
star rna-seq written 3 months ago by caggtaagtat • 230 • updated 3 months ago by swbarnes2 ♦ 3.6k
8
votes
1
answer
261
views
1
answer
All chromosomes for mapping?
star rna-seq mapping written 3 months ago by caggtaagtat • 230 • updated 3 months ago by Devon Ryan ♦ 81k
2
votes
2
answers
1.5k
views
2
answers
Please adivse me on differential expression analysis on the STAR/Stringtie output
count stringtie star differential expression edger written 16 months ago by seta • 990 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
249
views
0
answers
My STAR settings for alternative splicing analysis
mapping star rna-seq alternative splicing written 3 months ago by caggtaagtat • 230
2
votes
1
answer
351
views
1
answer
STAR do i need --twopassMode ?
star rna-seq 2-pass mapping written 3 months ago by caggtaagtat • 230
7
votes
2
answers
320
views
2
answers
Trimming single end reads for STAR?
trimming star rna-seq written 3 months ago by caggtaagtat • 230 • updated 3 months ago by h.mon ♦ 15k
0
votes
1
answer
862
views
1
answer
deseq dataset from star
deseq2 star rna-seq written 17 months ago by Pals • 1.3k • updated 3 months ago by Biostar ♦♦ 20
2
votes
1
answer
335
views
1
answer
[STAR] Why are there so many more mapped reads than unmapped reads in my .sam output file?
star rna-seq written 3 months ago by Kristin Muench • 220 • updated 3 months ago by Jeffin Rockey • 510
1
vote
1
answer
440
views
1
answer
STAR using splice junctions from SJ.out to find flanking exons (GRCh37)
gtf sj.out grch37 star rna-seq written 5 months ago by stefanos.bamopoulos • 30 • updated 3 months ago by Eric Lim • 600
1
vote
1
answer
380
views
1
answer
STAR index fail with gtf, works with gff3
gff3 gtf star written 4 months ago by Bastien Hervé • 1.3k
0
votes
1
answer
247
views
1
answer
Creating genome alignment
star rna-seq written 4 months ago by dec986 • 100 • updated 4 months ago by lshepard • 130
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