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What software is designed to do human identity analysis applying CODIS and other panels of forensically relevant genome biomarkers?

str forensic human identity codis written 4 months ago by mathisdead • 0

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Are there any STR and other forensic genomics references packages to use them for alignment against a complete genome of a suspect?

str forensic suspect written 4 months ago by mathisdead • 0

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645

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Where are examples of Interspersed repeats?

ministatellite str repeats sequence written 15 months ago by veronicaschroeder78 • 100

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535

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Tool for Converting STR Sequence Data to Bracketed Sequence

str next-gen sequence tool written 2.0 years ago by lattarulol • 0 • updated 2.0 years ago by Michael Dondrup ♦ 44k

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657

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Parameters cutoff for extraction of TRUE Short Tandem Repeats (STR) from lobSTR result

str short tandem repeat genotyping written 2.9 years ago by Louis Kok • 10 • updated 2.8 years ago by Biostar ♦♦ 20

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STR (short tandem repeats) ID from bam file?

str bam written 3.3 years ago by Richard • 550

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2.1k

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PGDSpider command line can't find pop file?

vcf str snp software error written 4.0 years ago by a.cardilini • 0 • updated 4.0 years ago by Devon Ryan ♦ 81k

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Recent Replies

A: Introns from Exons of GTF File by ATpoint • 5.7k
You may scroll down a bit [on this post][1], and follow the steps I posted there. In short, intro...
C: Introns from Exons of GTF File by gtasource • 10
I tried using genome tools, but the problem I have with it is will not allow me to use a modified...
C: Introns from Exons of GTF File by genomax ♦ 52k
See if this helps: https://www.biostars.org/p/242745/
C: rsem calculate expression using STAR. Reference genome format? by h.mon ♦ 16k
Yes, you should have used `--quantMode TranscriptomeSAM --quantTranscriptomeBan IndelSoftclipSing...
C: local blastx output by agata88 • 670
Thanks, I downloaded nr database from here: ftp://ftp.ncbi.nlm.nih.gov/blast/db//FASTA/nr.gz Yes...
C: using Trinotate or not? by h.mon ♦ 16k
Of course Trinotate is helpful, annotating a transcriptome is a complex task and Trinotate is a p...
C: local blastx output by h.mon ♦ 16k
> How can I get organism name https://www.biostars.org/p/146303/ Do not forget you also nee...
A: Should you decompose and normalize multi-allelic variants for comparison / ID as by dvitsios • 0
I had a struggle recently figuring out the order of elements within the Genotype Count (**GC**) o...
C: Losing somatic SNPs by ATpoint • 5.7k
Does the tool remove variants that are unlikely to be related to disease? If so, I would not be s...
C: Iterating through paired-end reads in samtools / pysam by olavur • 60
Pierre Lindenbaum did suggest this in a comment above. Did you try it? Is it fast, and does it ge...
C: local blastx output by genomax ♦ 52k
> I downloded nr database from ftp ncbi site and indexed it by > makeblastdb script. Small...
C: Get all chemical compounds interacted with target by emanismail.92 • 0
I tried pubchem pug rest api, but can't reach such service

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