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143

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How to perform Short Tandem Repeat association analysis from VCF file?

vcf str gwas written 8 weeks ago by bibb77 • 80

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252

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6 follow

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How I could download the genotypes STRs of the 1000 genomes project?

str written 3 months ago by tfronta • 10 • updated 3 months ago by Charles Warden ♦ 7.2k

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134

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How to compute similarity score of Y STR multiple numeric lists using Python or Java?

str forensic java codis python written 4 months ago by informatics_warwick • 0

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326

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What software is designed to do human identity analysis applying CODIS and other panels of forensically relevant genome biomarkers?

str forensic human identity codis written 17 months ago by mathisdead • 10 • updated 8 months ago by griley5000 • 0

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280

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Are there any STR and other forensic genomics references packages to use them for alignment against a complete genome of a suspect?

str forensic suspect written 17 months ago by mathisdead • 10

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1.3k

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Where are examples of Interspersed repeats?

ministatellite str repeats sequence written 2.3 years ago by veronicaschroeder78 • 110

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755

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Tool for Converting STR Sequence Data to Bracketed Sequence

str next-gen sequence tool written 3.1 years ago by lattarulol • 0 • updated 3.1 years ago by Michael Dondrup ♦ 46k

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816

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Parameters cutoff for extraction of TRUE Short Tandem Repeats (STR) from lobSTR result

str short tandem repeat genotyping written 4.0 years ago by Louis Kok • 10 • updated 3.9 years ago by Biostar ♦♦ 20

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1.2k

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STR (short tandem repeats) ID from bam file?

str bam written 4.4 years ago by Richard • 560

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2.7k

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PGDSpider command line can't find pop file?

vcf str snp software error written 5.0 years ago by a.cardilini • 0 • updated 5.0 years ago by Devon Ryan ♦ 91k

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Recent Replies

A: how i can use SRA accession Number to call raw reads ? by yasokannan93 • 0
Both the options (FASTQ files FTP and NCBI SRA file FTP) can be used. Its the same file.
C: Trascription factor binding sites prediction using FIMO by Eisuan • 0
It is funny because all the time I try to apply some tools that search matches in a database usin...
C: Assembling of 22 reads from D-LOOP failed by netsam • 10
There was no scaffold and no contigs. I used Spades embedded in Galaxy. Last rows of error log f...
C: Problem with font size in a tree by RamRS ♦ 23k
Please see https://www.biostars.org/p/309884/ to add your images properly. You need **the direct ...
A: selection soft Power in WGCNA by andres.firrincieli • 40
I think you are working with transcripts and not genes; 60000 seems a little to much. By the way,...
C: Error during parsing PDB using Biopython. by jrj.healey ♦ 13k
Can you provide an example of a file that works and one that doesn’t?
C: Why does my TOM network heatmap for WGCNA display red background and golden modu by Kevin Blighe ♦ 46k
Please Accept an answer (and up-vote it) if it has helped to solve the issue.
C: Why does my TOM network heatmap for WGCNA display red background and golden modu by kingwind333 • 0
Yes u r right. Then I won't bother either. Thank you!
A: Installing and importing viennaRNA to python in windows by ofek.schnitzer • 10
If anyone else encounters this problem I found a workaround: after downloading and installing the...
C: Why does my TOM network heatmap for WGCNA display red background and golden modu by andres.firrincieli • 40
I could be wrong but If you followed every step of the tutorial, I would not bother too much abou...
A: High CDS Count in my assembled Genome using Nanopore reads (ONT) data by h.mon ♦ 26k
As this is a Nanopore-only assembly, there are many errors (mainly indels) which negatively affec...
C: Assembling of 22 reads from D-LOOP failed by h.mon ♦ 26k
What do you mean by "failed"? What was the result? Two contigs? Three contigs? No contigs at all?...

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