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Showing: str • reset

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Where are examples of Interspersed repeats?

ministatellite str repeats sequence written 9 weeks ago by veronicaschroeder78 • 100

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271

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Tool for Converting STR Sequence Data to Bracketed Sequence

str next-gen sequence tool written 11 months ago by lattarulol • 0 • updated 11 months ago by Michael Dondrup ♦ 42k

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454

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Parameters cutoff for extraction of TRUE Short Tandem Repeats (STR) from lobSTR result

str short tandem repeat genotyping written 22 months ago by Louis Kok • 10 • updated 21 months ago by Biostar ♦♦ 20

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616

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STR (short tandem repeats) ID from bam file?

str bam written 2.2 years ago by Richard • 490

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1.4k

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PGDSpider command line can't find pop file?

vcf str snp software error written 2.9 years ago by a.cardilini • 0 • updated 2.9 years ago by Devon Ryan ♦ 68k

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Recent Replies

C: STAR mapped more reads to transcriptome by Chris Fields • 1.7k
It's hard to say w/o knowing specifically how you ran STAR. Maybe a difference in the total # of...
C: FASTQ- Reverse reads of paired end sequence worse than forward reads by genomax ♦ 29k
Sadly the original data submitters appear to have modified the default Illumina fastq headers, so...
A: cutadapt error while performing Trim_Galore by dariober • 7.8k
>FASTQ file is expected to start with '@', but found '\n' If this is true It seems you have a...
C: FASTQ- Reverse reads of paired end sequence worse than forward reads by dilawerkh4 • 0
This is what I get using the -F option: @1 GCCGCGCCGGTGATGGT +1 ]]]]]]]]]]]]]]]]] @2 AGTCGG...
A: FeatureCount for miRNA count by k.kathirvel93 • 30
Command : featureCounts -t miRNA -g name -a hsa.gff -o counts.txt mapping_results.bam Result : c...
C: Run Samtools on multiple files by Pierre Lindenbaum ♦ 95k
> does that "16" means the no. of threads? yes
C: FeatureCount for miRNA count by WouterDeCoster ♦ 19k
> so i have tried featureCounts with various parameters but i couldn't. And it would be VERY ...
C: MACS2 produces different results using BAMPE and BEDPE by mcjmigdal • 0
Hi, did you ever got to the bottom of this problem? Kinda fighting same thing here. I did find t...
C: why spectral clustering show a warning? by Jean-Karim Heriche ♦ 11k
> what's wrong As the message says, your graph is not fully connected or said another way,...
C: featureCounts/HTSeq-count problem with different annotation files by genomax ♦ 29k
> I tried a lot but i couldn't You need to specify what exactly you tried to get meaningful h...
A: featureCounts/HTSeq-count problem with different annotation files by k.kathirvel93 • 30
Can anyone help me ? I want to count my miRNA by using featureCounts. i have a .bam filee after ...
C: spliting sdf file by genomax ♦ 29k
Check [this toolkit out][1]. Otherwise use the suggestion [in this thread][2] to convert to PDB f...

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