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Showing: strain • reset

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Compare genomes of different mouse strains

mouse strain snp written 3 months ago by sbhagwat2 • 0

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Is a fully assembled 129S1/SvlmJ mouse strain available for download? If so where?

mouse genome strain written 2.6 years ago by diltsjeri • 410 • updated 2.6 years ago by Devon Ryan ♦ 81k

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Recent Replies

C: Trim Paired-end Fastq Files by yuabrahamliu • 30
Awesome. I think it is a very useful tool, fastq-pair.
C: Convert GDCResults object (nested lists) to a human readable data frame by user31888 • 20
Correct. `as.data.frame.GDCResults` appears in the v1.2.0 and 1.5.4 helpers. But still: >...
C: SNP Prioritization Tool by Rick P • 0
I have a list of both coding and non-coding SNPs. The SPOT software allowed to analyze both codi...
C: How to fix the error in meshes package? by mahmood.amiri225 • 0
I edited the codes and put the geneID1 and geneID2 valuse.
C: differences in covered regions in exome and whole genome sequencing by miaowzai • 60
I only kept around 900 EUR individuals from my exome data and only the ~500 EUR from the 1000geno...
C: How to fix the error in meshes package? by mahmood.amiri225 • 0
Thank you for mentioning the mistake. This is not the exact problem. I only made a mistake when I...
A: <3000$ in funding for computer equipment. Should I save this for cloud computing by Eric Lim • 750
Just want to provide some data points for what we pay AWS. Stoke is a small biotech and our entir...
C: Trim Paired-end Fastq Files by yuabrahamliu • 30
Thank you. I used wc -l to check the total line, and then divide them by 4.
C: compare SV results across samples - Manta, Delly by fritz.sedlazeck • 30
Yes. I have used it multiple times for Delly, Manta and Lumpy.
C: Convert GDCResults object (nested lists) to a human readable data frame by cpad0112 • 7.7k
GenomicDataCommons v1.2.0 has `as.data.frame.GDCResults` function. Try `help(package = GenomicDa...
C: Convert GDCResults object (nested lists) to a human readable data frame by user31888 • 20
Installed `GenomicDataCommons v1.5.4` on macOS WITHOUT updating dependencies. I can connect to th...
C: Cutadapt installation - user defined directory by ATpoint • 5.6k
Doesn't really add to the topic, but I recently saw that cutadapt is now multithreaded, but only ...

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