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structural variant • reset2
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written 10 weeks ago by
waqasnayab • 160
• updated
10 weeks ago by
Kevin Blighe ♦ 30k
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written 19 months ago by
thomas.welch • 0
• updated
19 months ago by
Brian Bushnell ♦ 16k
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Recent Replies
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C: How to download genome assemblies from NCBI with a list of GCA identifiers? by
jrj.healey ♦ 7.7k
Are you sure you set the right filters on `ngd`, such as assembly level etc? It should download a...
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A: How to create scatter plot with small pie charts? by
Vitis • 1.6k
Please see this: https://guangchuangyu.github.io/2016/12/scatterpie-for-plotting-pies-on-ggplot...
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A: Number of reads per lane by
genomax ♦ 57k
Illumina traditionally counts two reads coming from a cluster independently. `312000000` passing ...
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A: Number of reads per lane by
grant.hovhannisyan • 1.1k
What is sequenced is a so called "fragment". To simplify, they will sequence each sample with 100...
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C: TPKM vs FPKM by
nanoide • 10
I am aware of the differences between FPKM/RPKM and TPM. I had never heard of TPKM either. It see...
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C: TPKM vs FPKM by
nanoide • 10
Thanks for the source, it's alway good to refresh these concepts
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C: Number of citations of an article per year using PMIDs by
clem.essien • 0
please is there an api equivalent of this code. I want to be able to generate this using a single...
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C: Orientation of PE reads a review of --fr --ff and --rf meanings by
Juke-34 • 1.4k
The DNA complicates the concept, but in the same time it allows avoiding to add extra explanation...
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A: R code for Differential Gene Expression by
landrjos • 10
Hi Kevin, Regarding point 1....can you show me the changes you would suggest? Can you make the ...
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C: Calculate minor allele frequency from VCF by
RamRS ♦ 18k
I've moved Pierre's comment to an answer. You can accept it to give this post closure. ![Upvote|...
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C: Calculate minor allele frequency from VCF by
rshoobs • 0
yes this is perfect! has a MAF option I can use
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C: log transformation of rpkm by
elb • 150
Thank you Kevin! You help me a lot every time! Thank you again!
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