structural variant Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: structural variant • reset

or Classic search

votes

answer

307

views

answer

Inversion validation / confirmation

genome next-gen structural variant inversion written 6 months ago by waqasnayab • 180 • updated 6 months ago by Kevin Blighe ♦ 37k

votes

answers

990

views

answers

Whole-genome alignment of two or more bacterial genomes - find structural variants

whole-genome alignment snp structural variant written 9 months ago by Tim • 110

votes

answers

389

views

answers

Popular Structural Variant Simulator

wgs structural variant dna written 13 months ago by boyu93 • 10

vote

answer

467

views

answer

Any techniques faster than Breakdancer?

sv breakdancer structural variant dna written 14 months ago by boyu93 • 10 • updated 14 months ago by Eric T. • 2.3k

votes

answers

762

views

answers

primer design tool suggestions

primer structural variant dna written 21 months ago by novicebioinforesearcher • 50

vote

answers

507

views

answers

large deletion detection in a haploid microbial eukaryote

haploid microbial structural variant sequencing written 23 months ago by thomas.welch • 0 • updated 23 months ago by Brian Bushnell ♦ 16k

votes

answers

1.1k

views

answers

Strange Pattern in Bam File

alignment structural variant bam written 2.8 years ago by Can Holyavkin • 240

votes

answers

756

views

answers

Publicly available Genome-strip calls for the platinum CEPH 1463?

structural variant written 3.6 years ago by Zev.Kronenberg ♦ 11k

votes

answers

2.6k

views

answers

Tool: Wham - a structural variant caller and association testing framework

gwas tool structural variant bam bwa mem genotype written 4.1 years ago by Zev.Kronenberg ♦ 11k

Recent Votes

Recent Locations • All »

United Kingdom, 6 minutes ago

Recent Awards • All »

Teacher to finswimmer ♦ 10k
Good Answer to Istvan Albert ♦♦ 79k
Appreciated to Istvan Albert ♦♦ 79k
Scholar to WouterDeCoster ♦ 37k
Autobiographer to Corentin • 260
Teacher to Friederike ♦ 2.8k

Recent Replies

C: How to run EXCAVATOR2? by pradyumna Jayaram • 160
Even I didn't run any R script myself, those scripts are run by perl wrapper, there are some R sc...
A: Creating Genbank files with Python using BioGenBankRecord by toth.joe • 0
Thanks for the information. I realized that I had a problem with the Genbank record format. Her...
C: Are small RNAs included in a typical Illumina RNA seq dataset? by llanoe • 0
Makes sense to me. I will check with the person who processed the samples to confirm. Thanks for ...
A: tools for unique reads generation from fastqs by genomax ♦ 62k
You need `clumpify.sh` from BBMap suite to remove/count duplicate reads. See this: https://www.bi...
A: GISTIC segment overlap error by ysh • 0
I think the reason is the cnv segment in line 26227 is included in segment in line 26377, they ca...
C: rMATs error: unknown file type by tomoya • 0
I tried gcc-6, however, I still have the same error (My operating system is macOS ver. 10.14.2). ...
C: WGCNA gene significance by genomax ♦ 62k
Please use `ADD REPLY/ADD COMMENT` when responding to existing posts to keep threads logically or...
A: WGCNA gene significance by rebekah_321 • 20
Many thanks for your reply, but I don't think this software is appropriate as I am working on a n...
C: Problem with bcftools roh by noushin.farnoud • 90
Yes, it's puzzling. No error. But as noted in the stdout (last line of the block above) it says 2...
C: what is inverse normalized RNA-seq expression and how to do that? by piyushjo • 110
Hi Kevin. Thanks for your response. I did see that particular thread and the cited paper. However...
C: Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis] by groverj3 • 0
I know I'm about 7 years late to the party here, but I had a chuckle at this "obviating any scrip...
C: Bioinformatics word cloud to use in classes by gramarga • 40
Sure! Would you mind pointing me to a GitHub example with good practices?

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 973 users visited in the last hour