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m93 • 150
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written 20 months ago by
Vijay Lakhujani ♦ 4.2k
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Eric Normandeau ♦ 10k
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Recent Replies
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C: About DESeq2 analysis by
H.Chloe • 0
Thanks for your answers and this is my BED file. Geneid Chr Start End Strand Length drip.wh...
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jibran.tahir • 0
Great, it worked very well- just added bsub to the start to put the job on back end, cheers
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A: how to switch REF and ALT alleles in VCF files if the REF is incorrect according by
Shicheng Guo • 7.5k
Now I get the best solution with vcftools bcftools view -T ^remove.txt $i -Ov | bcftools nor...
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C: How to clean this strange VCF file? by
Shicheng Guo • 7.5k
First, thanks so much for the help! Second, I guess I can remove these columns with single '0'...
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C: How to clean this strange VCF file? by
cmdcolin • 1.2k
0/0 and ./. actually mean different things (this was a surprise to me at one point also). The ./....
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C: About DESeq2 analysis by
H.Chloe • 0
Thanks for your comment and I am sorry for my explanations. I created an RNA-seq count table usin...
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C: Setting colour palettes correctly for correlation plots by
exin • 50
Here we go: cts<- read.table("cor_gene.txt",header=T,row.names=1,sep="\t") cts<- ...
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C: Improvement of genome assembly using illumina contigs and nanopore reads by
KG • 10
Thanks for your suggestions. I'll give it a try and use nanopore polishing tools. We have not g...
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A: About DESeq2 analysis by
h.mon ♦ 26k
The [DESeq2 vignette][1] provides ample information on almost all aspects of a differential expre...
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C: Setting colour palettes correctly for correlation plots by
Friederike ♦ 4.3k
can you provide the entire code you use for the heatmap generation, not just the color part? (dif...
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Jurat Shahidin • 60
thanks for your reply. I got this error after I remove `0+`: > row dimension of design doesn'...
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If this doesn't solve the issue, I strongly recommend to [alert the author of the package](https:...
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