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<prev • 22 results • page 1 of 1 • next >
0
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subread keeps makes a weird .sam file, have i done something wrong?
subread alignment rsubread reference dna written 23 days ago by amy_houseman • 10
1
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1
answer
110
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1
answer
featureCounts paired end mode
paired featurecounts subread rna-seq bam written 26 days ago by henry-keen • 20 • updated 26 days ago by Carlo Yague ♦ 5.7k
2
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1
answer
341
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1
answer
featureCounts, GZIP ERROR:-2
ngs degs subread rna-seq written 7 months ago by bisht20diksha • 20 • updated 7 months ago by Shalu Jhanwar • 490
6
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1
answer
391
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1
answer
[Title Edited] How to update the GFF3 wrong file? [was:] featureCounts may be ignore chloroplast sequences in a plant genome when use -t exon and -g ID in a GFF file?
forum featurecounts subread rna-seq written 10 months ago by marcelolaia • 10
4
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1
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254
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1
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Different length returned by featureCounts and seqtk comp and AGAT
subread agat featurecounts rsubread seqtk written 10 months ago by marcelolaia • 10 • updated 10 months ago by Juke34 • 5.2k
1
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0
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938
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featureCounts: Low % assigned fragments and discrepancy between STAR alignment multi mapped reads
subread next-gen featurecounts star rna-seq written 10 months ago by david.gonzalez • 10
3
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1
answer
870
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1
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featureCounts does not summarise counts from added/reporter genes
subread featurecounts rsubread star rna-seq written 12 months ago by eduardogccm • 10
2
votes
2
answers
358
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2
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Non-overlapping exon set for exon counting (Illumina RNA-seq)
gtf exon subread featurecounts rna-seq written 12 months ago by andreismolnikov00 • 10 • updated 12 months ago by i.sudbery ♦ 11k
2
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2
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382
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2
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featureCounts log: "WARNING contig is not found in the provided genome file!"
featurecounts subread rna-seq written 13 months ago by Andrés Ribone • 0 • updated 13 months ago by dbpzdbpz • 140
0
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1
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667
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1
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Different results from featureCounts using gene_id and gene_biotype
biotype featurecounts subread rna-seq readcounts written 15 months ago by CuriusScientist • 50 • updated 15 months ago by i.sudbery ♦ 11k
0
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0
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774
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featureCounts parameters for RNA-Seq
featurecounts subread rna-seq readcounts written 15 months ago by CuriusScientist • 50 • updated 15 months ago by h.mon ♦ 32k
2
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2
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1.1k
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2
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RNA-Seq Read Counting using featureCounts
featurecounts subread rna-seq written 16 months ago by deepak18 • 10
1
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0
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547
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0
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featureCounts() in Rsubread freezes on gene_biotype as the meta-feature, command-line version doesn't
subread featurecounts rsubread rna-seq written 17 months ago by jirkanov • 10
2
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1
answer
696
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1
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Strand specific in RNA-seq
featurecounts subread rna-seq written 2.3 years ago by swarajgaikwad15 • 30 • updated 2.3 years ago by caggtaagtat • 1.4k
0
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0
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1.8k
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0
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Using the align() function of the Rsubread package; error: unrecognized option `--gtfFeature'
next-gen seq ngs rsubread subread alignment written 3.9 years ago by cristian • 260 • updated 2.5 years ago by Ram ♦ 32k
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1
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1.4k
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1
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featureCounts fails to reorder BAM and duplicates read counts
featurecounts subread rna-seq written 2.7 years ago by samuel.marsh • 0 • updated 2.7 years ago by Devon Ryan ♦ 98k
0
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1
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1.4k
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1
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How to increase the speed of subread for DNA whole genome sequence
speed dna sequence subread written 4.5 years ago by tarek.mohamed • 270 • updated 2.8 years ago by andysw90 • 20
0
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0
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2.1k
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0
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Reads not assigned to features in featureCounts software
featurecounts subread written 3.9 years ago by James Ashmore • 3.1k
4
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2
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1.5k
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2
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RNA-Seq read alignment using subread gives error.
subread rna-seq written 4.3 years ago by Sumit Paliwal • 30 • updated 4.3 years ago by WouterDeCoster ♦ 45k
0
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1
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2.3k
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1
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"featureCounts" of "subRead" does not work with ensembl.gft
gtf ensembl subread rna-seq written 4.5 years ago by alakatos • 0 • updated 4.5 years ago by GZ1995 • 400
3
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1
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1.4k
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1
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Subread average running time
subjunc subread rna-seq written 5.1 years ago by Jarretinha ♦ 3.3k
1
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1
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4.8k
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1
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featureCounts duplicate counting
rnaseq duplicates featurecounts subread written 6.6 years ago by lkmklsmn • 930 • updated 6.6 years ago by dbpzdbpz • 140
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