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How to identify Substitution rate is per time unit in baseml

baseml substitution rate codeml written 23 months ago by aloke205 • 40

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Estimating synonymous substitution rate

inverted repeat substitution rate single copy written 4.8 years ago by cbaudo • 10 • updated 4.7 years ago by hbw • 80

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Recent Replies

C: How do I know bcftools mpileup command completed? by townsendae • 0
Great! I’ll give that a go, thanks!
C: How do I know bcftools mpileup command completed? by GenoMax ♦ 96k
You would normally use `-o file.out -e file.err` on `sbatch or srun` command line submission (or ...
C: What dataset do I use to annotate a transcriptome? Another transcriptome or a ge by pseudacris • 0
That makes perfect sense, this is very helpful. Thank you very much!
C: Why GATK output haploid GT(genotype) even though my samples are diploid? by haruki • 10
Thank you for your comments. If second individual is missing genotype, it should be "./." beca...
C: RNA-seq ribosomal genes vs proteins by igor ♦ 12k
Good article. Didn't realize they addressed this point so well and that the fractions are consist...
A: How do I know bcftools mpileup command completed? by townsendae • 0
Shoot no I did not. Do you know how I would do that?
C: How do I know bcftools mpileup command completed? by GenoMax ♦ 96k
Hard to tell. This looks like intermediate status output. Did you capture both STDOUT/STDERR to s...
C: Recommendations for genome-wide genotyping platform, array and data analysis sof by GenoMax ♦ 96k
This disorder is likely polygenic? If you have a lot of samples the SNP arrays will be more cost ...
C: Bacterial RNA-SEQ - Quality Control by GenoMax ♦ 96k
You should first scan/trim this data before re-running FastQC. Post that result here. As @swbarne...
A: How to transform the deg gene list from seurat to a gene list input to clusterPr by Pancreas Pratik • 110
Sorry for lateness, I wanted to do something similar. This is what I did for reference: **Using...
A: Bacterial RNA-SEQ - Quality Control by swbarnes2 ♦ 9.6k
Are you **entirely** sure that what fastqc is expecting is what you are aiming for? I would susp...
C: Bacterial RNA-SEQ - Quality Control by Sammy • 10
I mean L001_R1 "per sequence GC content" looks identical with L002_R1, L003_R1 and L004_R1. Ok, s...

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