Showing: svareset
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Strong covariates and weak biological signal in transcriptomes
R sva written 3 months ago by Agustin Gonzalez-Vicente40 • updated 3 months ago by zx87548.2k
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223
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224
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Principal component analysis of SVA's surrogate variables
sva stdev surrogate variables written 4 months ago by RNAseqer 110 • updated 4 months ago by geek_y9.9k
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182
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129
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sva pprob.b all 0s?
R sva pprob.b microarray written 4 months ago by RNAseqer 110
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413
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305
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Question about sva + edgeR to identify differentially expressed genes
sva edger written 5 months ago by tujuchuanli50 • updated 5 months ago by ATpoint23k
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1.8k
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svaseq and combat
combat sva effect batch written 2.3 years ago by Folder40g120 • updated 6 months ago by liull_hust0
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12k
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1
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removing batch effects using ComBat and SVA
R sva combat batch effect written 3.3 years ago by LJ180 • updated 7 months ago by Agustin Gonzalez-Vicente40
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351
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 7 months ago by exin50 • updated 7 months ago by zx87548.2k
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193
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338
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ComBat correction with one batch containing only one sample - keep or remove?
proteome sva combat R written 10 months ago by hesse.sebastian80 • updated 8 months ago by Biostar ♦♦ 20
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287
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3
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382
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5 follow
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sva output interpretation
sva rna-seq written 11 months ago by elb160 • updated 11 months ago by Devon Ryan92k
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1
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Help with multiple batch effects
sva batch effects combat written 14 months ago by fp8920 • updated 14 months ago by genomax71k
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311
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1
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Batch effect correction
sva combat matlab written 16 months ago by gstavropoulos199110
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6
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952
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5 follow
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Surrogate variable analysis: ask for a practical example
sva rna-seq written 17 months ago by Mozart140 • updated 17 months ago by RamRS24k
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RNAseq sva-seq drops number of DE genes?
R sva svaseq rna-seq written 17 months ago by brismiller10 • updated 17 months ago by Kevin Blighe48k
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993
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998
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17
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14 follow
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Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 2.1 years ago by lessismore690 • updated 23 months ago by Kevin Blighe48k
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1
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6 follow
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RNA-Seq Batch correction negative values
batch-effect combat scran rna-seq sva written 24 months ago by rmf730 • updated 24 months ago by Kevin Blighe48k
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6 follow
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1.3k
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SVA analysis output R
R sva rna-seq written 2.0 years ago by robertt_bw0 • updated 2.0 years ago by lessismore690
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Taking surrogate variable into account before running PCA
sva svaseq batch effect written 2.3 years ago by wamiqsaifi0 • updated 2.2 years ago by ivivek_ngs4.8k
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