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Germline and somatic model, which one is preferred to call SVs fish male and female population

genome svs written 10 days ago by bioming • 0 • updated 10 days ago by WouterDeCoster ♦ 34k

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108

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News: Registration deadline: Comparative genomics

news svs snp written 11 weeks ago by carlopecoraro2 • 780

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1.1k

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7 follow

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Detecting Structural variants in sequencing data

structural variants calling svs sequencing written 17 months ago by Glen • 20 • updated 12 months ago by Biostar ♦♦ 20

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402

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Running Pindel individually per sample rather than running everything as it expects

ngs svs pindel written 17 months ago by mehmetgoktay1989 • 0

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1.8k

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Anyone used BAMSurgeon to spike in 1KB insertions/deletions?

genome bam bamsurgeon svs written 3.2 years ago by sichan • 60 • updated 21 months ago by lzy • 0

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532

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Software SVS for DNA-seq

dna-seq cattle svs rna-seq written 2.1 years ago by gabriela.ribeiro.br • 0 • updated 2.1 years ago by genomax ♦ 58k

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942

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Representative set for normal structural variation

genome structural variants svs dbvar dgv written 4.1 years ago by dmyersturnbull • 70

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Recent Replies

C: Where can I download ALL pfam flat-file annotations? by O.rka • 70
I essentially want to get the name and description given a pfam identifier. For example, `'PF015...
C: Where can I download ALL pfam flat-file annotations? by lieven.sterck • 3.1k
Not without looking into them, but these [notes][1] might be informative? What do you mean with ...
A: Annotation with de novo or genome guided transcriptome assembly by h.mon ♦ 21k
If you have RNAseq data and pass it to `funannotate predict`, it will do genome-guided assembly f...
C: Where can I download ALL pfam flat-file annotations? by O.rka • 70
I only found one file with annotations ^^^. Do you know if there is another file on the ftp site?
C: Where can I download ALL pfam flat-file annotations? by lieven.sterck • 3.1k
perhaps from the [PFAM website][1] ? on their ftp site look in to the 'current_release' folder. ...
C: BLAST against cancer genome by WouterDeCoster ♦ 34k
> I am looking for cancer genomes. Maybe you should start there, then. You'll find aligned r...
C: BLAST against cancer genome by mhasa006 • 30
I don't have the genomes. I am looking for cancer genomes.
C: Concat VCFs with some shared samples by QVINTVS_FABIVS_MAXIMVS • 2.1k
Because the merge tools do not like the duplicate sample names. And if you `--force-samples` then...
C: Concat VCFs with some shared samples by Pierre Lindenbaum ♦ 114k
> So is there an easy way to concat (not merge) these VCFs into one? why don't you want to m...
C: 1000Genome SV integrated map's power for SV filter by QVINTVS_FABIVS_MAXIMVS • 2.1k
The link to AnnotSV seems to be broken. If you are an author on the paper, do you mind fixing the...
C: Extract chimeric reads by Pierre Lindenbaum ♦ 114k
yes. One part of the read maps one organism, another maps the virus.
C: running problem Albacore by WouterDeCoster ♦ 34k
Strange. Did you get an error message? If not, please search for a pipeline.log file (using find).

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