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News: Registration deadline: Comparative genomics

news svs snp written 24 days ago by carlopecoraro2 • 760

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903

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7 follow

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Detecting Structural variants in sequencing data

structural variants calling svs sequencing written 15 months ago by Glen • 20 • updated 10 months ago by Biostar ♦♦ 20

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378

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Running Pindel individually per sample rather than running everything as it expects

ngs svs pindel written 15 months ago by mehmetgoktay1989 • 0

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1.7k

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Anyone used BAMSurgeon to spike in 1KB insertions/deletions?

genome bam bamsurgeon svs written 3.0 years ago by sichan • 60 • updated 19 months ago by lzy • 0

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509

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Software SVS for DNA-seq

dna-seq cattle svs rna-seq written 23 months ago by gabriela.ribeiro.br • 0 • updated 23 months ago by genomax ♦ 55k

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919

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Representative set for normal structural variation

genome structural variants svs dbvar dgv written 3.9 years ago by dmyersturnbull • 70

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Recent Replies

C: Organizing tools/ software by Kevin Blighe ♦ 28k
> Containerized software is better for version management and > reproducibility of workflow...
C: Organizing tools/ software by Kevin Blighe ♦ 28k
I actually enjoy installing and organising these programs but I never store their location in my ...
C: Efficient way to convert several lists into a present/absent binary format? by Kevin Blighe ♦ 28k
Okay, in addition to the desired output that you posted (a few comments up), can you show what th...
C: Efficient way to convert several lists into a present/absent binary format? by stellaparker • 10
It looked to work initially, but it seems that if there is any value in the "Gene" column and the...
C: Seeking ideas and guidance for an undergraduate project by Pierre Lindenbaum ♦ 112k
https://www.biostars.org/p/257281/ https://www.biostars.org/p/128683/ https://www.biostars.org/...
C: Organizing tools/ software by dariober ♦ 9.4k
Hi- I'm not very familiar with docker and friends (they have been on my todo list for quite a whi...
A: RNA-seq samples along different time points, how to run Stringtie? by grant.hovhannisyan • 1.1k
I would run Stringtie for all the samples separately, then will merge all the GTF files together ...
C: scatter over optional argument by ionox0 • 140
I assume that to apply the default value to all of the inputs we would need to specify this `adap...
C: edirect esearch : exclude given accessions by erwan.scaon • 550
Yes, I get what you mean. I just wanted to achieve my goal (retrieve all full length genome seq...
C: Question: featureCounts error: Assertion `1 != corrected_run' failed. by giuseppe0525 • 20
Thank you for your suggestion. There seemed to be a bug which was fixed in the latest version. I ...
C: gene expression analysis using RNA seq data by Kevin Blighe ♦ 28k
Yes, you can interpret it that zero means no expression. It follows, then, that higher values equ...
C: edirect esearch : exclude given accessions by genomax ♦ 55k
Annotations/collection of meta data is by no means a perfect process and if you repeat this every...

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