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Recent Replies
Comment: How Can I Merge A Large Amount Of Vcf Files?
by
Thind amarinder
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130
how to add, one more column with for sample names (e.g base name of the file)
Comment: vcftools intersect vs bedtools intersect
by
Alex Reynolds
32k
`--intersect` means something different in `bedops` than it does in other tools. With `--element-of`, this is a set membership test: does t…
Answer: For loop - mkdir and command
by
5heikki
9.6k
Perhaps:
for F in *.fasta; do
mkdir /Users/laura/bio/insilicoseq/$(basename "$F" .fasta)
iss generate \
-…
Comment: why my volcano plot looks strange?
by
hellocita
▴
30
Thanks for your help! Now it looks better, and there are still many dots near the middle line, was this acceptable?
Comment: LTR insertion time
by
stevejonn
•
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The first thing you should understand is that SettingWithCopyWarning is a warning, and not an error. The real problem behind the warning is…
Answer: why my volcano plot looks strange?
by
swbarnes2
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Reverse and log scale the y axis for starters.
Comment: RepeatModeler is showing no progress
by
Shri hari
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20
could you check the logs or could you please give a more clear picture about the problem
Comment: Can i stop my Repeatmodeler run at round 5?
by
Shri hari
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I tried to find an option which limits the number of rounds which the repeatmodeller run but didn't find any
Comment: Remove reads from bam file that partially covers a region
by
arbarharw
•
0
Thanks Pierre.
It's working well for me.
Below is an example of coverage before and after processing.
Before
version 2.3.6
version 2.3.6