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24
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5
answers
12k
views
15 follow
5
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Use tabix with a list of regions
tabix written 7.9 years ago by win820 • updated 9 days ago by zx87549.2k
2
votes
1
answer
189
views
1
answer
VCF-merge fails due to tabix not producing .tbi files
vcf vcf-merge tabix written 14 days ago by brallen10 • updated 14 days ago by Kevin Blighe59k
0
votes
1
answer
141
views
1
answer
Pipe output from curl to tabix to slice .vcf file
vcf tabix curl written 6 weeks ago by j.lunger1810 • updated 26 days ago by Biostar ♦♦ 20
0
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0
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87
views
0
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passing vcf.gz and vcg.gz.tbi files in tabix comand while doing range search
tabix written 5 weeks ago by mandecent.gupta0 • updated 5 weeks ago by geek_y11k
0
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1
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164
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1
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index tabulate file to get chrom, pos, ref, alt
indexing tabix coordinates variants written 5 months ago by damian.loska10 • updated 5 months ago by Pierre Lindenbaum128k
1
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0
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179
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0
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0
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1
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168
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1
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Using xargs to tabix each line of a bed to a vcf
vcf tabix xargs awk written 5 months ago by jvijai1.2k • updated 5 months ago by ATpoint34k
2
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1
answer
222
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1
answer
6
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4
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1.7k
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4
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tabix for ID column
tabix snp written 2.9 years ago by finswimmer13k • updated 5 months ago by Biostar ♦♦ 20
2
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1
answer
142
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1
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using samtools to verify tabix. Query in python generates error.
python tabix samtools written 6 months ago by richyanicky10 • updated 6 months ago by ATpoint34k
1
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1
answer
230
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1
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error bcftools isec
vcf tabix bcftools written 6 months ago by lait150 • updated 6 months ago by jared.andrews075.5k
1
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1
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427
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1
answer
Parsing tabix with pysam
tabix pysam written 10 months ago by Alex Reynolds30k • updated 10 months ago by John Marshall2.0k
2
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1
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677
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1
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2
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1
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443
views
1
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4
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1
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5.6k
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1
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Tabix With Gff3
gff3 tabix gff written 6.3 years ago by kevin.mohamed19920 • updated 11 months ago by Biostar ♦♦ 20
4
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2
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528
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2
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tabix to exclude chromosomes from vcf
vcf tabix snp written 11 months ago by cubellis10 • updated 11 months ago by zx87549.2k
6
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0
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361
views
0
answers
1
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1
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599
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1
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Error using Tabix
vcf R tabix written 16 months ago by AS0 • updated 15 months ago by dariober11k
0
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1
answer
590
views
1
answer
trouble with tabix on generic file
tabix samtools written 20 months ago by gewa10
110
votes
4
answers
77k
views
29 follow
4
answers
Generate vcf.gz file and its index file vcf.gz.tbi
vcf tabix written 7.4 years ago by lyz10302012350 • updated 20 months ago by zx87549.2k
4
votes
1
answer
4.9k
views
1
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Sorting with vcftools for tabix gone wrong
vcf tabix sort vcftools index written 5.7 years ago by axelwilhelm100 • updated 2.0 years ago by Biostar ♦♦ 20
8
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1
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4.1k
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1
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4
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0
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4.6k
views
0
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Trouble indexing a .vcf.gz file
vcf tabix vcf.gz compressing written 2.5 years ago by ricfoz30 • updated 2.5 years ago by RamRS27k
1
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1
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893
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1
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0
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0
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971
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0
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1
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1
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2.0k
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1
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bcftools merge, error "Could not parse the region(s)"
vcf merge bcftools tabix written 2.6 years ago by agathejouet0 • updated 2.6 years ago by Pierre Lindenbaum128k
7
votes
2
answers
1.9k
views
7 follow
2
answers
VCF tabix query by ID column
vcf tabix written 2.7 years ago by liangzebin556630 • updated 2.7 years ago by Alex Reynolds30k
62
votes
5
answers
43k
views
38 follow
5
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Extract Sub-Set Of Regions From Vcf File
vcf genome tabix filter written 8.0 years ago by Rubal7770 • updated 2.7 years ago by geocarvalho140
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1.2k
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0
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2
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1
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6.2k
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1
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Trouble With Tabix In Using Vcf Tools
tabix vcftools linux written 6.8 years ago by C001010 • updated 2.8 years ago by bioscientist1220
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