1 hour ago by
Rasoulfarzaneh63
•
0
1
vote
2
replies
35
views
0
votes
1
reply
40
views
updated 1 hour ago by
Mensur Dlakic
★
10k
•
written 4 hours ago by
pt.taklifi
▴
60
4
votes
2
replies
72
views
updated 1 hour ago by
Mensur Dlakic
★
10k
•
written 7 hours ago by
Junior
•
0
0
votes
0
replies
58
views
1 hour ago by
Gordon Smyth
★
2.5k
0
votes
0
replies
28
views
0
votes
0
replies
25
views
3 hours ago by
BISEP
•
0
0
votes
0
replies
32
views
580
votes
155
replies
64k
views
89 follow
0
votes
3
replies
86
views
1
vote
2
replies
56
views
3 hours ago by
biobiu
▴
120
279
votes
54
replies
10k
views
39 follow
3
votes
5
replies
138
views
0
votes
0
replies
40
views
6 hours ago by
Boberoni
•
0
0
votes
0
replies
40
views
7 hours ago by
Boberoni
•
0
0
votes
0
replies
484
views
1
vote
1
reply
54
views
updated 7 hours ago by
GenoMax
99k
•
written 9 hours ago by
mtavakoli4030
•
0
0
votes
0
replies
27
views
9 hours ago by
madhujamano
•
0
0
votes
0
replies
36
views
6 hours ago by
antmantras
•
0
2
votes
1
reply
59
views
updated 7 hours ago by
Pierre Lindenbaum
135k
•
written 10 hours ago by
dare_devil
★
1.4k
1
vote
2
replies
116
views
0
votes
1
reply
99
views
updated 16 hours ago by
GenoMax
99k
•
written 21 hours ago by
boczniak767
▴
740
0
votes
2
replies
146
views
1
vote
2
replies
115
views
10 minutes ago by
iibrams07
•
0
0
votes
0
replies
69
views
0
votes
5
replies
232
views
18 hours ago by
kra277
•
0
1
vote
3
replies
328
views
updated 11 hours ago by
dare_devil
★
1.4k
•
written 3 months ago by
brunobsouzaa
▴
520
4
votes
6
replies
231
views
1 hour ago by
Rogerio Ribeiro
▴
50
0
votes
0
replies
77
views
updated 22 hours ago by
Ram
32k
•
written 1 day ago by
pavelasquezv
▴
10
0
votes
1
reply
80
views
updated 21 hours ago by
boczniak767
▴
740
•
written 1 day ago by
CHINMAYA
•
0
8
votes
8
replies
266
views
0
votes
2
replies
147
views
1 day ago by
kilcdincer
•
0
2
votes
3
replies
118
views
2
votes
2
replies
86
views
4
votes
6
replies
232
views
0
votes
2
replies
160
views
updated 1 day ago by
German.M.Demidov
★
2.0k
•
written 9 weeks ago by
John
▴
160
2
votes
1
reply
74
views
updated 1 day ago by
Michael Dondrup
48k
•
written 1 day ago by
giova34
•
0
0
votes
1
reply
66
views
updated 1 day ago by
Kevin Blighe
72k
•
written 1 day ago by
Palgrave
▴
20
0
votes
0
replies
34
views
0
votes
1
reply
61
views
updated 1 day ago by
Istvan Albert
87k
•
written 1 day ago by
ruddhida
•
0
0
votes
0
replies
35
views
1 day ago by
here_for_learning
•
0
0
votes
1
reply
93
views
updated 1 day ago by
finswimmer
14k
•
written 1 day ago by
dare_devil
★
1.4k
0
votes
0
replies
62
views
0
votes
3
replies
199
views
updated 22 hours ago by
Istvan Albert
87k
•
written 2 days ago by
gemmalouisebaldock
▴
10
0
votes
1
reply
97
views
updated 1 day ago by
German.M.Demidov
★
2.0k
•
written 1 day ago by
kristina.mahan
▴
130
0
votes
1
reply
109
views
updated 1 day ago by
GenoMax
99k
•
written 1 day ago by
julianneradford
•
0
1
vote
3
replies
149
views
44 minutes ago by
Camila Martínez
•
0
0
votes
0
replies
137
views
1 day ago by
Chris Fields
★
2.2k
4
votes
3
replies
122
views
updated 1 day ago by
Kevin Blighe
72k
•
written 2 days ago by
The
▴
160
5
votes
6
replies
972
views
6 follow
updated 1 day ago by
jared.andrews07
9.2k
•
written 7 months ago by
demoraesdiogo2017
▴
40
0
votes
1
reply
90
views
Recent Votes
Recent Locations •
All
Odense, just now
Universe, 1 minute ago
New Delhi, 3 minutes ago
India, 3 minutes ago
Radolfzell, 5 minutes ago
Norway, 5 minutes ago
Paris, 5 minutes ago
Recent Awards •
All
Popular Question to
andrew.j.skelton73
6.2k
Teacher to
Michael Dondrup
48k
Teacher to
Mensur Dlakic
★
10k
Teacher to
finswimmer
14k
Popular Question to
i.sudbery
11k
Popular Question to
theodore
▴
80
Popular Question to
9606
▴
320
Recent Replies
Comment: Generate a file with SNPs given a WGS dataset
by
iibrams07
•
0
@Dave Carlson. Many thanks. Once at step 6., what should I do to collect only the SNPs and discard other variants ? I need to pipe this col…
Comment: Prokka only creates .log file
by
Camila Martínez
•
0
Thank you! Turns out I need to update a package. I tried creating a new environment just for prokka and everything worked perfectly.
Thank …
Comment: How to extract only the specific fasta sequences by matching the ID's to a diff
by
Prakash
★
2.1k
If you jsut want to extract the sequence based on Id, I not sure if you have one fasta file or multiple fasta file. you can concateante all…
Answer: How do I find the gene name with the allele number from the databases?
by
Rasoulfarzaneh63
•
0
X_84670461
ID chr- SNP position
26_23089878
How do I find the gene name with the allele number from the databases?
Answer: How to implement k fold cv after randomForest
by
Mensur Dlakic
★
10k
Your setup has what is known as [**the curse of dimensionality**][1] where the number of measured features is much greater than the overall…
Comment: How do I find the gene name with the allele number from the databases?
by
GenoMax
99k
Provide examples whenever any sort of identifiers are being mentioned. Without that information there is no way to answer this question.
Answer: How to visualize Multiple Sequence Alignment with python ?
by
GenoMax
99k
You should also be able to import the alignment into [MEGA][1] for display.
[1]: https://www.megasoftware.net/
Answer: How to visualize Multiple Sequence Alignment with python ?
by
Mensur Dlakic
★
10k
Can't think of a particularly good alignment viewer in python.
If you are more interested in result rather than doing it in python, there …
Comment: Using outgroup in gene family dendograms
by
Mensur Dlakic
★
10k
> Wouldn't a gene that isn't an ABC superfamily member from some distant species suffice as an outgroup candidate here?
Most definitely no…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
by
Istvan Albert
87k
with that definition I would suspect that all of your sequences are "dependent", I would expect every functional DNA/RNA region to capture …
Comment: Taxonomy assignment of viral RNA
by
biobiu
▴
120
Thanks!
As for the blast option- (1) so do you suggest to just blast the contig against a db of viral RNAs? and (2) is there a comprehensiv…
Comment: Finding how many times a nucleotide appear in the same position
by
cpad0112
15k
#!/usr/bin/env python3
sequences = ["GAGGTAAACTCTG", "TCCGTAAGTTTTC", "CAGGTTGGAACTC", "ACAGTCAGTTCAC", "TAGGTCATTACAG", "TAGG…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
by
Anand Rao
▴
350
Thanks for your reply. Yes, I think I could have explained my problem much better, but rather than change my original post, I will add some…
Answer: Finding how many times a nucleotide appear in the same position
by
Dunois
▴
610
Here's a little `python` function you can work off of:
def count_quer_at_pos_in_seq(seqs, quer = "A"):
#Initialize a list…
Comment: Using outgroup in gene family dendograms
by
Rogerio Ribeiro
▴
50
Thank for the fast reponse. The ABC family is not the best example for this question indeed.
The objective of my work is to find genes resp…
Traffic: 1572 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6