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<prev • 165 results • page 1 of 6 • next >
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Kraken_results or Kraken_report? Which file to consider ?
pathways taxonomy kraken written 3 days ago by data_diva • 0
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82
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taxonomic classification with rna-seq data
rnaseq kaiju taxonomy kraken imsa+a written 4 days ago by vm.higareda • 20
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Tree file and taxonomy
mothur taxonomy tree written 3.3 years ago by yuki.weber81 • 10 • updated 16 days ago by Biostar ♦♦ 20
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136
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1
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Taxonomic assignment of bins found by Maxbin2
taxonomy bins maxbin2 written 7 weeks ago by Hansen_869 • 10 • updated 7 weeks ago by Mensur Dlakic • 2.5k
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how many genomes from BLAST hit should be considered for phylogeny tree analysis?
phylogeny genome taxonomy tree written 9 weeks ago by DanielC • 100 • updated 7 weeks ago by Biostar ♦♦ 20
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Database Recommendations for 16S-seq of the V4 Region
microbiome taxonomy silva 16s-seq dada2 written 8 weeks ago by dmj6ab • 10
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What is the difference between "root" and "cellular organisms" in NCBI taxonomy?
taxonomy classification written 8 weeks ago by luise.schulte • 0 • updated 8 weeks ago by Pierre Lindenbaum ♦ 124k
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208
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Missing GenBank identifier to NCBI taxonomy mapping
ncbi taxonomy genbank written 8 weeks ago by martinsteinegger • 30 • updated 8 weeks ago by h.mon ♦ 28k
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114
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Tool: PipeTaxon: A tool to exposes the NCBI taxonomy database as a REST API.
ncbi python taxonomy tool written 8 weeks ago by voorloopnul • 40
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Download whole dataset from NCBI Taxonomy
ncbi taxonomy written 4.1 years ago by stackf03 • 30 • updated 3 months ago by sebastian.zn • 0
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2
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Mapping NCBI Genome Accessions - NCBI Taxonomy IDs
genome ncbi taxonomy genbank written 4 months ago by mar.ark.parr • 40 • updated 4 months ago by genomax ♦ 75k
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187
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Interproscan sequence classification
interproscan taxonomy taxonomic classification written 6 months ago by drikaul • 10
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6 follow
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Extract Tree Topology From Ncbi Taxonomy Database
taxonomy bioperl written 7.1 years ago by Lhl • 730 • updated 6 months ago by peterlageweg603 • 10
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find bacteria lifestyle
lifestyle bacteria taxonomy written 6 months ago by Xylanaser • 30
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How to identify best-hit taxonomy of many gene sequences efficently
gene sequence taxonomy ncbi written 7 months ago by gwrathe • 0
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205
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1
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Taxids from BLAST search that are not present in names.dmp or nodes.dmp
taxonomy blast written 7 months ago by salanova.elliott • 0
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211
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taxonomic identification least common ancestor approach
phylogeny taxonomy genus phylum written 7 months ago by Moses • 110 • updated 7 months ago by Asaf ♦ 6.5k
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253
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5 follow
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Microbiome Taxonomy composition
microbiome taxonomy written 7 months ago by genomics Newbie • 20 • updated 7 months ago by Carambakaracho • 1.9k
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How to get 'nucl_est.assession2taxid .gz' from NCBI
ncbi taxonomy written 7 months ago by taylor • 0 • updated 7 months ago by genomax ♦ 75k
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1
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308
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1
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Complete phylogenetic trees?
phylogenetic tree of life taxonomy tree written 8 months ago by gtrwst9 • 0
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268
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Filter human parasites from taxonomic profiling with Kraken
metagenomics taxonomy parasites written 9 months ago by Fungsten • 0 • updated 9 months ago by ctseto • 250
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1
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1
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Filter command-line BLAST results by organism
genome alignment taxonomy blast written 5.2 years ago by jdromano2 • 10 • updated 9 months ago by Biostar ♦♦ 20
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2.8k
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7 follow
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Relative abundance fro metagenomics samples
metagenomics taxonomy relative abundance bwa written 2.9 years ago by David • 160 • updated 9 months ago by lagartija • 60
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2
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469
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Convert list of Accession Numbers to Full Taxonomy
ncbi taxonomy accession numbers written 9 months ago by dylan.lawrence • 20 • updated 9 months ago by genomax ♦ 75k
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NCBI Saccharomyces cerevisiae GENE_INFO has child taxon ID instead of parent.
ncbi taxonomy yeast written 9 months ago by manuel.belmadani • 1.1k
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Kaiju or MetaPhlAn2?
kaiju taxonomy metaphlan2 metagenomics written 10 months ago by shibl_a • 20
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6 follow
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Annotation of assembled metagenomic data
metagenomics taxonomy written 11 months ago by lagartija • 60 • updated 11 months ago by Juke-34 • 3.2k
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339
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all by all phylogenetic distances for massive set of ncbi taxon ID's
phylogeny ncbi taxonomy taxon id microbiology written 11 months ago by bioguy • 40 • updated 11 months ago by i.sudbery ♦ 6.4k
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362
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5 follow
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Add taxonomy information of fileA to species list in fileB
metagenomics taxonomy written 12 months ago by mariep92 • 0 • updated 12 months ago by shenwei356 ♦ 5.0k
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740
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SILVA taxonomy ranks
16s taxonomy silva written 12 months ago by gb • 1.2k • updated 12 months ago by Carambakaracho • 1.9k
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