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<prev • 137 results • page 1 of 5 • next >
0
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233
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1
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Can I convert a species to otu?
otu 16s taxonomy written 9 months ago by jeremy.cox.2 • 90 • updated 6 days ago by Vijay Lakhujani ♦ 3.1k
2
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1
answer
164
views
1
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NCBI edirect efetch error
software error ncbi taxonomy written 22 days ago by Inquisitive8995 • 30 • updated 17 days ago by h.mon ♦ 20k
1
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0
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203
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0
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Taxonomy problems on algae: Is Cryptophyta a Phylum or a Class rank?
ncbi algaebase cryptophyta taxonomy phylum written 10 weeks ago by christophe.djemiel • 0 • updated 4 weeks ago by Biostar ♦♦ 20
36
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5
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3.9k
views
6 follow
5
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NCBI Taxonomy Comparison
taxonomy tree comparison written 8.3 years ago by Yannick Wurm • 2.3k • updated 5 weeks ago by RamRS ♦ 18k
28
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3
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9.3k
views
5 follow
3
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Taxonomy Of Blast Hits
taxonomy blast written 8.6 years ago by Darked89 ♦ 4.2k • updated 6 weeks ago by RamRS ♦ 18k
1
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1
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187
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1
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Opinion on best way to taxonomically classify a genome
genome orthologs taxonomy phylogenomics written 7 weeks ago by msobol • 10 • updated 7 weeks ago by Carambakaracho • 550
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160
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Tutorial: Getting the lineage of an organism from NCBI taxonomy data
python tutorial taxonomy biosql written 10 weeks ago by Vimalkumar Velayudhan • 190
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4
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5.6k
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10 follow
4
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Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi taxonomy pipeline tool blast written 6.8 years ago by Daniel • 3.6k • updated 10 weeks ago by gtrwst9 • 0
1
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2
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169
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2
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Software for Taxonomic Profiling of Fungi
metagenomics taxonomy metagenomic fungi written 12 weeks ago by bhanratt • 10 • updated 12 weeks ago by toralmanvar • 650
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241
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Make taxonomy bar plot using qiime2 and error in denoise procedure and training classifier
denoise bar plot taxonomy metagenome qiime2 written 12 weeks ago by pple2202 • 0
1
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0
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184
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0
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From NCBI Taxonomy to 16s RNA (automated)
taxonomy 16s rna written 3 months ago by Benni • 20
1
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0
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243
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0
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BLAST taxid to complete linage using biopython on a local machine.
taxonomy biopython blast parsng written 6 months ago by lp.vandergouw • 0 • updated 4 months ago by Biostar ♦♦ 20
0
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164
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What are the industry-leading methods of benchmarking metagenomics taxonomy identification?
metagenomics taxonomy written 5 months ago by JacobS • 890 • updated 4 months ago by Biostar ♦♦ 20
0
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1
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241
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1
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Taxonomy assignment from draft genome
genome taxonomy whole genome fungi written 4 months ago by msobol • 10 • updated 4 months ago by Vijay Lakhujani ♦ 3.1k
3
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2
answers
465
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2
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FASTA file with taxid, want to obtain lineage and put into header
fasta ncbi taxdump taxonomy written 4 months ago by mariahaguiar001 • 0 • updated 4 months ago by Chris S. • 290
1
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1
answer
204
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1
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Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 4 months ago by neutrinoscientist • 0 • updated 4 months ago by Jean-Karim Heriche ♦ 16k
0
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1
answer
244
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1
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Phylogeny Tree based on SILVA classification
taxonomy written 4 months ago by neutrinoscientist • 0 • updated 4 months ago by Chirag Parsania • 1.1k
8
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1
answer
569
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1
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For a given set of NCBI taxonomy ids / species names, how to derive their species to species distance matrix ?
phylogeny species distance taxonomy written 5 months ago by Chirag Parsania • 1.1k
2
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1
answer
274
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1
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Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 5 months ago by auninsaw • 10
0
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0
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223
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0
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Where to find archived NCBI taxonomy file
genome assembly metagenomic taxonomy written 6 months ago by jesselee516 • 70
0
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168
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0
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Display full information about taxa instead of staxids in BLASTn
taxonomy genomic blast written 6 months ago by Shred • 60
0
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0
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284
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0
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Tutorial: How to get full taxonomy classification using taxize and myTAI
R tutorial taxonomy tool written 6 months ago by Daniel • 3.6k
8
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5
answers
4.3k
views
7 follow
5
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get taxonomy lineage from organism's name
taxonomy written 4.0 years ago by luanax85 • 20 • updated 6 months ago by magic136 • 0
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201
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Find list, flatfiles, or database of all gram + or - bacteria?
taxonomy written 6 months ago by O.rka • 60
1
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1
answer
237
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1
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Taxonomic trait database?
database taxonomy written 7 months ago by robertobfisher • 30 • updated 7 months ago by h.mon ♦ 20k
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1
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306
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1
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Chloroplast 16S sequences - any fun to be had?
16s taxonomy sequencing written 7 months ago by beegrackle • 90 • updated 7 months ago by 5heikki ♦ 7.8k
5
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1
answer
232
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5 follow
1
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Getting genes id from taxonomy
gene taxonomy entrez written 7 months ago by theLegend • 0 • updated 7 months ago by a.zielezinski ♦ 8.4k
0
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486
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Relabel/rename OTU IDs in an OTU table using a taxonomy file
rename otu taxonomy relabel sequencing written 7 months ago by jack1120 • 20
8
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0
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1.2k
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7 follow
0
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Tool: prepare_taxa_charts.py: A python program to automate taxonomic pie chart generation from QIIME
python 16s taxonomy tool qiime written 18 months ago by Vijay Lakhujani ♦ 3.1k
3
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1
answer
744
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1
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Interpretation of Kraken results
kraken metagenomics taxonomy classification written 9 months ago by ropolocan • 460 • updated 9 months ago by Joseph Hughes • 2.6k
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