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<prev • 142 results • page 1 of 5 • next >
6
votes
3
answers
134
views
5 follow
3
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Add taxonomy information of fileA to species list in fileB
metagenomics taxonomy written 14 days ago by mariep92 • 0 • updated 14 days ago by shenwei356 ♦ 4.3k
3
votes
1
answer
122
views
1
answer
SILVA taxonomy ranks
16s taxonomy silva written 25 days ago by gb • 540 • updated 22 days ago by Carambakaracho • 660
0
votes
0
answers
97
views
0
answers
Filter by Tax Rank in Kegg API
rest api taxonomy kegg written 4 weeks ago by dllopezr • 40
1
vote
0
answers
88
views
0
answers
How to query taxonomy ID using protein accession ID in NCBI or Uniprot?
ncbi taxonomy uniprot written 4 weeks ago by johnnytam100 • 100
1
vote
1
answer
147
views
1
answer
Nested Bubble Plots
taxonomy bubble plots written 5 weeks ago by ladypurrsia • 20 • updated 5 weeks ago by h.mon ♦ 22k
6
votes
2
answers
2.9k
views
5 follow
2
answers
Ncbi Taxonomy Database In Xml Format
xml taxonomy written 5.3 years ago by Ctanes • 70 • updated 6 weeks ago by Biostar ♦♦ 20
10
votes
4
answers
3.0k
views
7 follow
4
answers
Closest Related Bacterial Species
genome phylogenetics taxonomy written 7.2 years ago by Greg • 50 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
265
views
1
answer
Can I convert a species to otu?
otu 16s taxonomy written 11 months ago by jeremy.cox.2 • 90 • updated 9 weeks ago by Vijay Lakhujani ♦ 3.4k
2
votes
1
answer
270
views
1
answer
NCBI edirect efetch error
software error ncbi taxonomy written 11 weeks ago by Inquisitive8995 • 40 • updated 11 weeks ago by h.mon ♦ 22k
1
vote
0
answers
260
views
0
answers
Taxonomy problems on algae: Is Cryptophyta a Phylum or a Class rank?
ncbi algaebase cryptophyta taxonomy phylum written 4 months ago by christophe.djemiel • 0 • updated 3 months ago by Biostar ♦♦ 20
36
votes
5
answers
3.9k
views
6 follow
5
answers
NCBI Taxonomy Comparison
taxonomy tree comparison written 8.5 years ago by Yannick Wurm • 2.3k • updated 3 months ago by RamRS ♦ 19k
28
votes
3
answers
9.5k
views
5 follow
3
answers
Taxonomy Of Blast Hits
taxonomy blast written 8.8 years ago by Darked89 ♦ 4.2k • updated 3 months ago by RamRS ♦ 19k
1
vote
1
answer
222
views
1
answer
Opinion on best way to taxonomically classify a genome
genome orthologs taxonomy phylogenomics written 3 months ago by msobol • 10 • updated 3 months ago by Carambakaracho • 660
0
votes
0
answers
241
views
0
answers
Tutorial: Getting the lineage of an organism from NCBI taxonomy data
python tutorial taxonomy biosql written 4 months ago by Vimalkumar Velayudhan • 190
20
votes
4
answers
5.8k
views
10 follow
4
answers
Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi taxonomy pipeline tool blast written 6.9 years ago by Daniel • 3.7k • updated 4 months ago by gtrwst9 • 0
1
vote
2
answers
239
views
2
answers
Software for Taxonomic Profiling of Fungi
metagenomics taxonomy metagenomic fungi written 4 months ago by bhanratt • 20 • updated 4 months ago by toralmanvar • 730
0
votes
0
answers
373
views
0
answers
Make taxonomy bar plot using qiime2 and error in denoise procedure and training classifier
denoise bar plot taxonomy metagenome qiime2 written 4 months ago by pple2202 • 0
1
vote
0
answers
229
views
0
answers
From NCBI Taxonomy to 16s RNA (automated)
taxonomy 16s rna written 5 months ago by Benni • 20
1
vote
0
answers
280
views
0
answers
BLAST taxid to complete linage using biopython on a local machine.
taxonomy biopython blast parsng written 8 months ago by lp.vandergouw • 0 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
195
views
0
answers
What are the industry-leading methods of benchmarking metagenomics taxonomy identification?
metagenomics taxonomy written 7 months ago by JacobS • 890 • updated 6 months ago by Biostar ♦♦ 20
0
votes
1
answer
321
views
1
answer
Taxonomy assignment from draft genome
genome taxonomy whole genome fungi written 6 months ago by msobol • 10 • updated 6 months ago by Vijay Lakhujani ♦ 3.4k
3
votes
2
answers
583
views
5 follow
2
answers
FASTA file with taxid, want to obtain lineage and put into header
fasta ncbi taxdump taxonomy written 6 months ago by mariahaguiar001 • 0 • updated 6 months ago by Chris S. • 290
1
vote
1
answer
247
views
1
answer
Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 6 months ago by neutrinoscientist • 0 • updated 6 months ago by Jean-Karim Heriche ♦ 17k
0
votes
1
answer
309
views
1
answer
Phylogeny Tree based on SILVA classification
taxonomy written 6 months ago by neutrinoscientist • 0 • updated 6 months ago by Chirag Parsania • 1.2k
8
votes
1
answer
759
views
1
answer
For a given set of NCBI taxonomy ids / species names, how to derive their species to species distance matrix ?
phylogeny species distance taxonomy written 7 months ago by Chirag Parsania • 1.2k
2
votes
1
answer
348
views
1
answer
Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 7 months ago by auninsaw • 10
0
votes
0
answers
301
views
0
answers
Where to find archived NCBI taxonomy file
genome assembly metagenomic taxonomy written 8 months ago by jesselee516 • 70
0
votes
0
answers
222
views
0
answers
Display full information about taxa instead of staxids in BLASTn
taxonomy genomic blast written 8 months ago by Shred • 70
0
votes
0
answers
371
views
0
answers
Tutorial: How to get full taxonomy classification using taxize and myTAI
R tutorial taxonomy tool written 8 months ago by Daniel • 3.7k
8
votes
5
answers
4.5k
views
7 follow
5
answers
get taxonomy lineage from organism's name
taxonomy written 4.2 years ago by luanax85 • 20 • updated 8 months ago by magic136 • 0
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