Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 173 results • page 1 of 6 • next >
0
votes
0
answers
127
views
0
answers
Conversion of fasta file to taxon id(?)
ncbi sequence taxonomy taxon id blast written 12 days ago by sajjalwaqas • 0
7
votes
2
answers
118
views
2
answers
how to find the kingdom for a taxon id using the terminal?
ncbi kingdom taxonomy terminal written 28 days ago by Freddy • 20 • updated 28 days ago by genomax ♦ 80k
1
vote
1
answer
66
views
1
answer
small representative database
data taxonomy proteomes genomes written 29 days ago by lagartija • 80 • updated 29 days ago by Mensur Dlakic • 4.3k
4
votes
1
answer
106
views
1
answer
converting taxID to taxonomy
ncbi taxid taxonomy terminal written 6 weeks ago by Freddy • 20 • updated 6 weeks ago by genomax ♦ 80k
1
vote
1
answer
128
views
1
answer
Using Entrez to find the taxonomy for an accession number
ncbi accession_number taxonomy entrez written 7 weeks ago by Freddy • 20 • updated 7 weeks ago by vkkodali • 1.9k
7
votes
2
answers
181
views
7 follow
2
answers
How to get Taxonomy and Taxon ID for an Accession number using R/Python?
R taxonomy accession numer python written 8 weeks ago by Freddy • 20 • updated 8 weeks ago by Chirag Parsania • 1.7k
0
votes
1
answer
246
views
1
answer
Is it possible to get taxonomy identifiers from diamond output without using --taxonmap during makedb?
alignment taxonomy protein diamond blast written 3 months ago by O.rka • 170 • updated 8 weeks ago by yinbinqiu • 0
0
votes
1
answer
151
views
1
answer
Kraken_results or Kraken_report? Which file to consider ?
pathways taxonomy kraken written 3 months ago by data_diva • 0 • updated 10 weeks ago by onestop_data • 200
0
votes
0
answers
99
views
0
answers
Taxonomy from Pfam database
bioinformatics taxonomy pfam written 3 months ago by shibl_a • 20
1
vote
0
answers
169
views
0
answers
taxonomic classification with rna-seq data
rnaseq kaiju taxonomy kraken imsa+a written 3 months ago by vm.higareda • 20
2
votes
1
answer
1.5k
views
1
answer
Tree file and taxonomy
mothur taxonomy tree written 3.6 years ago by yuki.weber81 • 10 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
247
views
1
answer
Taxonomic assignment of bins found by Maxbin2
taxonomy bins maxbin2 written 5 months ago by Hansen_869 • 20 • updated 5 months ago by Mensur Dlakic • 4.3k
2
votes
0
answers
222
views
0
answers
how many genomes from BLAST hit should be considered for phylogeny tree analysis?
phylogeny genome taxonomy tree written 6 months ago by DanielC • 120 • updated 5 months ago by Biostar ♦♦ 20
1
vote
0
answers
281
views
0
answers
Database Recommendations for 16S-seq of the V4 Region
microbiome taxonomy silva 16s-seq dada2 written 5 months ago by dmj6ab • 10
1
vote
1
answer
121
views
1
answer
What is the difference between "root" and "cellular organisms" in NCBI taxonomy?
taxonomy classification written 5 months ago by luise.schulte • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 127k
3
votes
1
answer
266
views
1
answer
Missing GenBank identifier to NCBI taxonomy mapping
ncbi taxonomy genbank written 5 months ago by martinsteinegger • 30 • updated 5 months ago by h.mon ♦ 29k
2
votes
0
answers
187
views
0
answers
Tool: PipeTaxon: A tool to exposes the NCBI taxonomy database as a REST API.
ncbi python taxonomy tool written 5 months ago by voorloopnul • 40
9
votes
1
answer
7.0k
views
1
answer
Download whole dataset from NCBI Taxonomy
ncbi taxonomy written 4.4 years ago by stackf03 • 30 • updated 6 months ago by sebastian.zn • 0
2
votes
2
answers
460
views
2
answers
Mapping NCBI Genome Accessions - NCBI Taxonomy IDs
genome ncbi taxonomy genbank written 7 months ago by mar.ark.parr • 40 • updated 7 months ago by genomax ♦ 80k
2
votes
0
answers
236
views
0
answers
Interproscan sequence classification
interproscan taxonomy taxonomic classification written 10 months ago by drikaul • 10
7
votes
3
answers
2.7k
views
6 follow
3
answers
Extract Tree Topology From Ncbi Taxonomy Database
taxonomy bioperl written 7.4 years ago by Lhl • 730 • updated 10 months ago by peterlageweg603 • 10
0
votes
0
answers
172
views
0
answers
find bacteria lifestyle
lifestyle bacteria taxonomy written 10 months ago by Xylanaser • 60
4
votes
0
answers
268
views
0
answers
How to identify best-hit taxonomy of many gene sequences efficently
gene sequence taxonomy ncbi written 10 months ago by gwrathe • 0
3
votes
1
answer
265
views
1
answer
Taxids from BLAST search that are not present in names.dmp or nodes.dmp
taxonomy blast written 10 months ago by salanova.elliott • 0
1
vote
1
answer
285
views
1
answer
taxonomic identification least common ancestor approach
phylogeny taxonomy genus phylum written 11 months ago by Moses • 120 • updated 11 months ago by Asaf ♦ 7.3k
3
votes
2
answers
302
views
5 follow
2
answers
Microbiome Taxonomy composition
microbiome taxonomy written 11 months ago by genomics Newbie • 20 • updated 11 months ago by Carambakaracho • 2.0k
1
vote
1
answer
314
views
1
answer
How to get 'nucl_est.assession2taxid .gz' from NCBI
ncbi taxonomy written 11 months ago by taylor • 0 • updated 11 months ago by genomax ♦ 80k
1
vote
1
answer
361
views
1
answer
Complete phylogenetic trees?
phylogenetic tree of life taxonomy tree written 12 months ago by gtrwst9 • 0
2
votes
2
answers
347
views
2
answers
Filter human parasites from taxonomic profiling with Kraken
metagenomics taxonomy parasites written 13 months ago by Fungsten • 0 • updated 12 months ago by ctseto • 280
3
votes
1
answer
3.6k
views
1
answer
Filter command-line BLAST results by organism
genome alignment taxonomy blast written 5.5 years ago by jdromano2 • 10 • updated 13 months ago by Biostar ♦♦ 20
<prev • 173 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • France/Bidart, 1 minute ago
  • University of Maryland, 2 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2029 users visited in the last hour