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Is it possible to get taxonomy identifiers from diamond output without using --taxonmap during makedb?
alignment taxonomy protein diamond blast written 10 months ago by O.rka • 220 • updated 26 days ago by Sej Modha ♦ 4.7k
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In NCBI names.dmp file what does it mean to have multiple nodes pointing to different names?
ncbi names.dmp taxonomy nodes.dmp written 5 weeks ago by psun • 0
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unclassified taxonomy rank
16s taxonomy written 6 weeks ago by mrashad • 40 • updated 6 weeks ago by Mensur Dlakic • 7.0k
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134
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MaarjAM database download related problems
taxa maarjam database taxonomy fungi written 10 weeks ago by the_dummy • 10 • updated 9 weeks ago by 405329753 • 0
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160
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Taxonomic classification of MAGs
genome metagenomics taxonomy binning written 10 weeks ago by c.e.chong • 20 • updated 10 weeks ago by Mensur Dlakic • 7.0k
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135
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Kraken taxonomy sublevels
kraken taxonomy taxonom written 11 weeks ago by fyfes • 30
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6 follow
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How to determine contig taxonomy from metagenome?
contig taxonomy metagenome identity written 11 weeks ago by Audrey • 20 • updated 11 weeks ago by lagartija • 90
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How to get pfam seed sequence taxonomy info?
ncbi taxonomy blast pfam written 5.4 years ago by beegrackle • 90 • updated 11 weeks ago by jubillante • 0
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Tutorial: How to get full taxonomy classification using taxize and myTAI
R tutorial taxonomy tool written 2.6 years ago by Daniel • 3.8k • updated 12 weeks ago by wangdepin5135 • 0
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217
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Fasta Taxonomy Annotation
fasta annotation taxonomy written 4 months ago by zach • 10 • updated 12 weeks ago by h.mon ♦ 31k
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Tool: kraken2table, an analogous to kaiju2table
kraken kaiju taxonomy classification tool written 12 weeks ago by Macspider • 3.2k
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2
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376
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5 follow
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converting taxID to taxonomy
ncbi taxid taxonomy terminal written 8 months ago by Freddy • 20 • updated 4 months ago by SilentGene • 50
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5 follow
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biopython entrez lost connection?
ncbi python taxonomy biopython written 5 months ago by flogin • 250
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229
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Extract 16S rRNA V6 region
microbiome 16s rrna taxonomy mothur written 6 months ago by dpc • 150
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302
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Conversion of fasta file to taxon id(?)
ncbi sequence taxonomy taxon id blast written 7 months ago by sajjalwaqas • 0
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how to find the kingdom for a taxon id using the terminal?
ncbi kingdom taxonomy terminal written 7 months ago by Freddy • 20 • updated 7 months ago by genomax ♦ 91k
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small representative database
data taxonomy proteomes genomes written 7 months ago by lagartija • 90 • updated 7 months ago by Mensur Dlakic • 7.0k
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Using Entrez to find the taxonomy for an accession number
ncbi accession_number taxonomy entrez written 8 months ago by Freddy • 20 • updated 8 months ago by vkkodali • 2.1k
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7 follow
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How to get Taxonomy and Taxon ID for an Accession number using R/Python?
R taxonomy accession numer python written 8 months ago by Freddy • 20 • updated 8 months ago by Chirag Parsania • 1.9k
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Kraken_results or Kraken_report? Which file to consider ?
pathways taxonomy kraken written 10 months ago by data_diva • 0 • updated 9 months ago by onestop_data • 250
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214
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Taxonomy from Pfam database
bioinformatics taxonomy pfam written 10 months ago by shibl_a • 20
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340
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taxonomic classification with rna-seq data
rnaseq kaiju taxonomy kraken imsa+a written 10 months ago by vm.higareda • 20
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Tree file and taxonomy
mothur taxonomy tree written 4.2 years ago by yuki.weber81 • 10 • updated 11 months ago by Biostar ♦♦ 20
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Taxonomic assignment of bins found by Maxbin2
taxonomy bins maxbin2 written 12 months ago by Hansen_869 • 20 • updated 12 months ago by Mensur Dlakic • 7.0k
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how many genomes from BLAST hit should be considered for phylogeny tree analysis?
phylogeny genome taxonomy tree written 12 months ago by DanielC • 130 • updated 12 months ago by Biostar ♦♦ 20
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Database Recommendations for 16S-seq of the V4 Region
microbiome taxonomy silva 16s-seq dada2 written 12 months ago by dmj6ab • 10
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What is the difference between "root" and "cellular organisms" in NCBI taxonomy?
taxonomy classification written 12 months ago by luise.schulte • 0 • updated 12 months ago by Pierre Lindenbaum ♦ 131k
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Missing GenBank identifier to NCBI taxonomy mapping
ncbi taxonomy genbank written 12 months ago by martinsteinegger • 30 • updated 12 months ago by h.mon ♦ 31k
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Tool: PipeTaxon: A tool to exposes the NCBI taxonomy database as a REST API.
ncbi python taxonomy tool written 12 months ago by voorloopnul • 40
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Download whole dataset from NCBI Taxonomy
ncbi taxonomy written 4.9 years ago by stackf03 • 30 • updated 13 months ago by sebastian.zn • 0
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