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<prev • 128 results • page 1 of 5 • next >
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Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 11 hours ago by neutrinoscientist • 0 • updated 8 hours ago by Jean-Karim Heriche ♦ 15k
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1
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81
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Phylogeny Tree based on SILVA classification
taxonomy written 1 day ago by neutrinoscientist • 0 • updated 1 day ago by Chirag Parsania • 630
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1
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125
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For a given set of NCBI taxonomy ids / species names, how to derive their species to species distance matrix ?
phylogeny species distance taxonomy written 24 days ago by Chirag Parsania • 630
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What are the industry-leading methods of benchmarking metagenomics taxonomy identification?
metagenomics taxonomy written 25 days ago by JacobS • 870
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1
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105
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1
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Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 29 days ago by auninsaw • 10
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109
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Where to find archived NCBI taxonomy file
genome assembly metagenomic taxonomy written 4 weeks ago by jesselee516 • 70
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74
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Display full information about taxa instead of staxids in BLASTn
taxonomy genomic blast written 4 weeks ago by danilo.tatoni • 60
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104
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BLAST taxid to complete linage using biopython on a local machine.
taxonomy biopython blast parsng written 5 weeks ago by lp.vandergouw • 0 • updated 5 weeks ago by jrj.healey • 4.2k
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110
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Tutorial: How to get full taxonomy classification using taxize and myTAI
R tutorial taxonomy tool written 6 weeks ago by Daniel • 3.6k
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7 follow
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get taxonomy lineage from organism's name
taxonomy written 3.6 years ago by luanax85 • 20 • updated 6 weeks ago by magic136 • 0
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103
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Find list, flatfiles, or database of all gram + or - bacteria?
taxonomy written 7 weeks ago by O.rka • 40
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1
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141
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Taxonomic trait database?
database taxonomy written 9 weeks ago by robertobfisher • 30 • updated 9 weeks ago by h.mon ♦ 15k
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1
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144
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1
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Chloroplast 16S sequences - any fun to be had?
16s taxonomy sequencing written 10 weeks ago by beegrackle • 90 • updated 10 weeks ago by 5heikki ♦ 7.2k
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141
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5 follow
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Getting genes id from taxonomy
gene taxonomy entrez written 11 weeks ago by theLegend • 0 • updated 11 weeks ago by a.zielezinski ♦ 8.3k
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243
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Relabel/rename OTU IDs in an OTU table using a taxonomy file
rename otu taxonomy relabel sequencing written 12 weeks ago by jack1120 • 20
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7 follow
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Tool: prepare_taxa_charts.py: A python program to automate taxonomic pie chart generation from QIIME
python 16s taxonomy tool qiime written 13 months ago by Vijay Lakhujani • 2.1k
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1
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331
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Interpretation of Kraken results
kraken metagenomics taxonomy classification written 4 months ago by ropolocan • 400 • updated 4 months ago by Joseph Hughes • 2.6k
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259
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Generate local blast database with RefSeq bacteria AND taxonomy
taxid taxonomy refseq blast written 4 months ago by even.s.riiser • 0
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150
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Can I convert a species to otu?
otu 16s taxonomy written 4 months ago by jeremy.cox.2 • 90
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275
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News: UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
fasta news taxonomy uniprot swiss-prot written 5 months ago by Elisabeth Gasteiger • 1.4k • updated 5 months ago by genomax ♦ 48k
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How to retrieve direct children of a taxon through Entrez using taxon IDs
taxonomy entrez eutils written 5 months ago by zbwrnz • 0 • updated 5 months ago by Biostar ♦♦ 20
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5 follow
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Trying to match Accession numbers to Taxonomy IDs
gene alignment taxonomy genbank conversion written 7 months ago by New2programming • 0 • updated 7 months ago by Pierre Lindenbaum ♦ 107k
71
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6
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17k
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23 follow
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Parsing Ncbi Taxonomic Tree?
ncbi python taxonomy tree written 6.6 years ago by Prohan • 340 • updated 8 months ago by Biostar ♦♦ 20
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1
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415
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Lowest common ancestor for taxonomy
ncbi lca taxonomy tree written 8 months ago by David • 70 • updated 8 months ago by Brian Bushnell ♦ 15k
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1
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2.1k
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1
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Extract Tree Topology From Ncbi Taxonomy Database
taxonomy bioperl written 5.5 years ago by Lhl • 730 • updated 9 months ago by Biostar ♦♦ 20
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2
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628
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Microbial diversity analysis using whole-genome metagenomic data
mothur taxonomy metagenome qiime written 9 months ago by elsoja • 20 • updated 9 months ago by Brian Bushnell ♦ 15k
2
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2
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443
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2
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Retrieving SRA files using Taxonomic IDs
sra eutility taxonomy written 9 months ago by Paul • 50
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1
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456
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5 follow
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How to automatically find the right species name when there are typos, using Entrez.esearch?
taxonomy biopython entrez written 10 months ago by peter pfand • 70 • updated 10 months ago by piet • 1.4k
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Using FastTree to Constrian by Taxonomy
alignment 16s taxonomy constraints fasttree written 10 months ago by dmj6ab • 0
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1
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456
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1
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Entrez esearch term format
ncbi taxonomy esearch entrez biopython written 10 months ago by smiller • 60
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