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<prev • 135 results • page 1 of 5 • next >
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Taxonomy problems on algae: Is Cryptophyta a Phylum or a Class rank?
ncbi algaebase cryptophyta taxonomy phylum written 10 days ago by christophe.djemiel • 0
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Tutorial: Getting the lineage of an organism from NCBI taxonomy data
python tutorial taxonomy biosql written 11 days ago by Vimalkumar Velayudhan • 180
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10 follow
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Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi taxonomy pipeline tool blast written 6.6 years ago by Daniel • 3.6k • updated 11 days ago by gtrwst9 • 0
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Software for Taxonomic Profiling of Fungi
metagenomics taxonomy metagenomic fungi written 26 days ago by bhanratt • 10 • updated 25 days ago by toralmanvar • 510
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Make taxonomy bar plot using qiime2 and error in denoise procedure and training classifier
denoise bar plot taxonomy metagenome qiime2 written 25 days ago by pple2202 • 0
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From NCBI Taxonomy to 16s RNA (automated)
taxonomy 16s rna written 7 weeks ago by Benni • 20
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BLAST taxid to complete linage using biopython on a local machine.
taxonomy biopython blast parsng written 4 months ago by lp.vandergouw • 0 • updated 10 weeks ago by Biostar ♦♦ 20
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What are the industry-leading methods of benchmarking metagenomics taxonomy identification?
metagenomics taxonomy written 3 months ago by JacobS • 880 • updated 10 weeks ago by Biostar ♦♦ 20
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Taxonomy assignment from draft genome
genome taxonomy whole genome fungi written 11 weeks ago by msobol • 10 • updated 11 weeks ago by Vijay Lakhujani ♦ 3.0k
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FASTA file with taxid, want to obtain lineage and put into header
fasta ncbi taxdump taxonomy written 12 weeks ago by mariahaguiar001 • 0 • updated 12 weeks ago by Chris S. • 290
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Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 12 weeks ago by neutrinoscientist • 0 • updated 12 weeks ago by Jean-Karim Heriche ♦ 16k
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Phylogeny Tree based on SILVA classification
taxonomy written 12 weeks ago by neutrinoscientist • 0 • updated 12 weeks ago by Chirag Parsania • 930
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For a given set of NCBI taxonomy ids / species names, how to derive their species to species distance matrix ?
phylogeny species distance taxonomy written 3 months ago by Chirag Parsania • 930
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Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 3 months ago by auninsaw • 10
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167
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Where to find archived NCBI taxonomy file
genome assembly metagenomic taxonomy written 3 months ago by jesselee516 • 70
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Display full information about taxa instead of staxids in BLASTn
taxonomy genomic blast written 4 months ago by Shred • 60
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Tutorial: How to get full taxonomy classification using taxize and myTAI
R tutorial taxonomy tool written 4 months ago by Daniel • 3.6k
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get taxonomy lineage from organism's name
taxonomy written 3.8 years ago by luanax85 • 20 • updated 4 months ago by magic136 • 0
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Find list, flatfiles, or database of all gram + or - bacteria?
taxonomy written 4 months ago by O.rka • 50
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Taxonomic trait database?
database taxonomy written 5 months ago by robertobfisher • 30 • updated 5 months ago by h.mon ♦ 18k
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Chloroplast 16S sequences - any fun to be had?
16s taxonomy sequencing written 5 months ago by beegrackle • 90 • updated 5 months ago by 5heikki ♦ 7.5k
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5 follow
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Getting genes id from taxonomy
gene taxonomy entrez written 5 months ago by theLegend • 0 • updated 5 months ago by a.zielezinski ♦ 8.4k
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Relabel/rename OTU IDs in an OTU table using a taxonomy file
rename otu taxonomy relabel sequencing written 5 months ago by jack1120 • 20
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7 follow
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Tool: prepare_taxa_charts.py: A python program to automate taxonomic pie chart generation from QIIME
python 16s taxonomy tool qiime written 16 months ago by Vijay Lakhujani ♦ 3.0k
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Interpretation of Kraken results
kraken metagenomics taxonomy classification written 7 months ago by ropolocan • 430 • updated 7 months ago by Joseph Hughes • 2.6k
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Generate local blast database with RefSeq bacteria AND taxonomy
taxid taxonomy refseq blast written 7 months ago by even.s.riiser • 0
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180
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Can I convert a species to otu?
otu 16s taxonomy written 7 months ago by jeremy.cox.2 • 90
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News: UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
fasta news taxonomy uniprot swiss-prot written 8 months ago by Elisabeth Gasteiger • 1.5k • updated 8 months ago by genomax ♦ 54k
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How to retrieve direct children of a taxon through Entrez using taxon IDs
taxonomy entrez eutils written 8 months ago by zbwrnz • 0 • updated 8 months ago by Biostar ♦♦ 20
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5 follow
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Trying to match Accession numbers to Taxonomy IDs
gene alignment taxonomy genbank conversion written 10 months ago by New2programming • 0 • updated 10 months ago by Pierre Lindenbaum ♦ 111k
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