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9
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6.2k
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1
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Download whole dataset from NCBI Taxonomy
ncbi taxonomy written 3.8 years ago by stackf03 • 30 • updated 9 days ago by sebastian.zn • 0
2
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2
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129
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2
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Mapping NCBI Genome Accessions - NCBI Taxonomy IDs
genome ncbi taxonomy genbank written 5 weeks ago by mar.ark.parr • 40 • updated 5 weeks ago by genomax ♦ 71k
2
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0
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146
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0
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Interproscan sequence classification
interproscan taxonomy taxonomic classification written 3 months ago by drikaul • 10
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3
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2.5k
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6 follow
3
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Extract Tree Topology From Ncbi Taxonomy Database
taxonomy bioperl written 6.9 years ago by Lhl • 730 • updated 4 months ago by peterlageweg603 • 0
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0
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111
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find bacteria lifestyle
lifestyle bacteria taxonomy written 4 months ago by Xylanaser • 20
4
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0
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159
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0
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How to identify best-hit taxonomy of many gene sequences efficently
gene sequence taxonomy ncbi written 4 months ago by gwrathe • 0
3
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1
answer
166
views
1
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Taxids from BLAST search that are not present in names.dmp or nodes.dmp
taxonomy blast written 4 months ago by salanova.elliott • 0
1
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1
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162
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1
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taxonomic identification least common ancestor approach
phylogeny taxonomy genus phylum written 4 months ago by Moses • 70 • updated 4 months ago by Asaf ♦ 6.1k
3
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2
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211
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5 follow
2
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Microbiome Taxonomy composition
microbiome taxonomy written 4 months ago by genomics Newbie • 20 • updated 4 months ago by Carambakaracho • 1.6k
1
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1
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180
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1
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How to get 'nucl_est.assession2taxid .gz' from NCBI
ncbi taxonomy written 4 months ago by taylor • 0 • updated 4 months ago by genomax ♦ 71k
1
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1
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245
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1
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Complete phylogenetic trees?
phylogenetic tree of life taxonomy tree written 6 months ago by gtrwst9 • 0
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2
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199
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2
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Filter human parasites from taxonomic profiling with Kraken
metagenomics taxonomy parasites written 6 months ago by Fungsten • 0 • updated 6 months ago by ctseto • 70
3
votes
1
answer
3.3k
views
1
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Filter command-line BLAST results by organism
genome alignment taxonomy blast written 4.9 years ago by jdromano2 • 10 • updated 6 months ago by Biostar ♦♦ 20
3
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3
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2.6k
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7 follow
3
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Relative abundance fro metagenomics samples
metagenomics taxonomy relative abundance bwa written 2.7 years ago by David • 160 • updated 6 months ago by lagartija • 60
1
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2
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332
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2
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Convert list of Accession Numbers to Full Taxonomy
ncbi taxonomy accession numbers written 6 months ago by dylan.lawrence • 10 • updated 6 months ago by genomax ♦ 71k
0
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0
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267
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0
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NCBI Saccharomyces cerevisiae GENE_INFO has child taxon ID instead of parent.
ncbi taxonomy yeast written 7 months ago by manuel.belmadani • 1.1k
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0
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371
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0
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Kaiju or MetaPhlAn2?
kaiju taxonomy metaphlan2 metagenomics written 8 months ago by shibl_a • 20
5
votes
1
answer
370
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6 follow
1
answer
Annotation of assembled metagenomic data
metagenomics taxonomy written 8 months ago by lagartija • 60 • updated 8 months ago by Juke-34 • 2.6k
3
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0
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279
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all by all phylogenetic distances for massive set of ncbi taxon ID's
phylogeny ncbi taxonomy taxon id microbiology written 8 months ago by bioguy • 40 • updated 8 months ago by i.sudbery ♦ 5.3k
6
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3
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311
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5 follow
3
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Add taxonomy information of fileA to species list in fileB
metagenomics taxonomy written 9 months ago by mariep92 • 0 • updated 9 months ago by shenwei356 ♦ 4.8k
3
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1
answer
598
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1
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SILVA taxonomy ranks
16s taxonomy silva written 10 months ago by gb • 900 • updated 9 months ago by Carambakaracho • 1.6k
0
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0
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303
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Filter by Tax Rank in Kegg API
rest api taxonomy kegg written 10 months ago by dllopezr • 40
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0
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369
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How to query taxonomy ID using protein accession ID in NCBI or Uniprot?
ncbi taxonomy uniprot written 10 months ago by johnnytam100 • 100
1
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1
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359
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1
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Nested Bubble Plots
taxonomy bubble plots written 10 months ago by ladypurrsia • 40 • updated 10 months ago by h.mon ♦ 27k
6
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2
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3.2k
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5 follow
2
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Ncbi Taxonomy Database In Xml Format
xml taxonomy written 6.0 years ago by Ctanes • 70 • updated 10 months ago by Biostar ♦♦ 20
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4
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3.4k
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7 follow
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Closest Related Bacterial Species
genome phylogenetics taxonomy written 7.9 years ago by Greg • 50 • updated 10 months ago by Biostar ♦♦ 20
0
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1
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429
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1
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Can I convert a species to otu?
otu 16s taxonomy written 20 months ago by jeremy.cox.2 • 90 • updated 11 months ago by lakhujanivijay ♦ 4.4k
2
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1
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678
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1
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NCBI edirect efetch error
software error ncbi taxonomy written 11 months ago by Inquisitive8995 • 130 • updated 11 months ago by h.mon ♦ 27k
1
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0
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474
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Taxonomy problems on algae: Is Cryptophyta a Phylum or a Class rank?
ncbi algaebase cryptophyta taxonomy phylum written 13 months ago by christophe.djemiel • 0 • updated 12 months ago by Biostar ♦♦ 20
36
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5
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4.2k
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6 follow
5
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NCBI Taxonomy Comparison
taxonomy tree comparison written 9.2 years ago by Yannick Wurm • 2.3k • updated 12 months ago by RamRS ♦ 24k
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