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77
votes
5
answers
27k
views
28 follow
5
answers
Automatically Getting The Ncbi Taxonomy Id From The Genbank Identifier
ncbi taxonomy genbank conversion written 8.8 years ago by Alf450 • updated 3.3 years ago by -_-850
15
votes
2
answers
23k
views
10 follow
2
answers
Getting Taxonomy Lineage From Ncbi Gi Or Accession Number
taxonomy blast written 7.8 years ago by Abhi1.5k • updated 3.3 years ago by -_-850
72
votes
6
answers
20k
views
23 follow
6
answers
Parsing Ncbi Taxonomic Tree?
ncbi python taxonomy tree written 8.6 years ago by Prohan350 • updated 2.7 years ago by Biostar ♦♦ 20
18
votes
4
answers
12k
views
12 follow
4
answers
How To Make A Blast Database With Taxonids From Ncbi Query.
makeblastdb metagenomics taxonomy blast written 8.4 years ago by Michael Dondrup47k • updated 4.2 years ago by 5heikki8.7k
28
votes
3
answers
11k
views
5 follow
3
answers
Taxonomy Of Blast Hits
taxonomy blast written 10.2 years ago by Darked894.2k • updated 20 months ago by RamRS27k
69
votes
0
answers
9.1k
views
67 follow
0
answers
20
votes
4
answers
7.4k
views
10 follow
4
answers
Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi taxonomy pipeline tool blast written 8.4 years ago by Daniel3.8k • updated 21 months ago by gtrwst90
9
votes
1
answer
7.2k
views
1
answer
Download whole dataset from NCBI Taxonomy
ncbi taxonomy written 4.5 years ago by stackf0330 • updated 8 months ago by sebastian.zn0
10
votes
5
answers
5.7k
views
8 follow
5
answers
get taxonomy lineage from organism's name
taxonomy written 5.6 years ago by luanax8520 • updated 2.1 years ago by magic13620
3
votes
3
answers
5.5k
views
3
answers
7
votes
1
answer
5.3k
views
1
answer
14
votes
2
answers
5.3k
views
2
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Ncbi Blast+ Taxid And Taxid_Map
ncbi makeblastdb taxonomy blast fasta written 9.6 years ago by Jelle50 • updated 4.7 years ago by Joseph Hughes2.8k
23
votes
4
answers
5.1k
views
9 follow
4
answers
Visualize / Highlight Specific Nodes In A Taxonomy Tree
taxonomy visualization tree written 9.2 years ago by Khader Shameer18k • updated 6.1 years ago by umer.zeeshan.ijaz1.8k
2
votes
1
answer
4.7k
views
1
answer
How to get phylum, class etc taxonomic ids from taxid?
phylogenetics taxonomy written 4.1 years ago by crespialba10 • updated 3.5 years ago by Biostar ♦♦ 20
10
votes
2
answers
4.6k
views
8 follow
2
answers
2
votes
3
answers
4.5k
views
3
answers
MEGAN and Kraken for taxonomy classification
taxonomy kraken readfile megan written 5.3 years ago by deepthithomaskannan320 • updated 5.0 years ago by ramanandan.prabhakaran20
36
votes
5
answers
4.4k
views
6 follow
5
answers
NCBI Taxonomy Comparison
taxonomy tree comparison written 9.9 years ago by Yannick Wurm2.3k • updated 20 months ago by RamRS27k
4
votes
2
answers
4.4k
views
2
answers
Otu Percentage Identity Related To Taxon Level
taxonomy written 7.2 years ago by Daniel3.8k • updated 3.9 years ago by Rob0
3
votes
2
answers
4.3k
views
2
answers
Ncbi Eutils : Retrieving Taxonomic Id From Organism Name Doesn'T Work Anymore
taxonomy written 7.0 years ago by magvazaryarvtre0 • updated 6.8 years ago by Hamish3.1k
19
votes
2
answers
4.2k
views
2
answers
3
votes
2
answers
4.1k
views
2
answers
Postgresql: Select Only Taxa Which Are Children Of A Given Taxon Using Parent Taxon Id
ncbi taxonomy written 8.1 years ago by Tgh10 • updated 6.1 years ago by Biostar ♦♦ 20
14
votes
4
answers
4.0k
views
4
answers
Obtain full taxonomic hierarchy from multiple species names
species metagenomics taxonomy contigs mg-rast written 4.6 years ago by fibar50 • updated 4.3 years ago by Biostar ♦♦ 20
3
votes
2
answers
4.0k
views
2
answers
14
votes
3
answers
3.9k
views
6 follow
3
answers
What Sparql End Point Can I Use With To Find All Animals?
taxonomy written 7.5 years ago by Egon Willighagen5.2k • updated 7.5 years ago by Jerven650
1
vote
2
answers
3.9k
views
2
answers
Retrieve Genbanks From Taxid
taxonomy biopython genbank written 7.9 years ago by JJK50 • updated 7.9 years ago by Peter5.8k
4
votes
1
answer
3.9k
views
1
answer
Ncbi Tax Id For Draft Bacteria Genomes
ncbi taxonomy bacteria conversion written 6.6 years ago by c.v.oflynn90 • updated 6.6 years ago by Pierre Lindenbaum128k
17
votes
2
answers
3.8k
views
5 follow
2
answers
Last Common Ancestor From Ncbi Taxonomy Using Java
ncbi java taxonomy written 8.9 years ago by Sudeep1.6k • updated 8.9 years ago by Pablo Pareja1.6k
3
votes
1
answer
3.7k
views
1
answer
Filter command-line BLAST results by organism
genome alignment taxonomy blast written 5.6 years ago by jdromano210 • updated 14 months ago by Biostar ♦♦ 20
10
votes
4
answers
3.7k
views
7 follow
4
answers
Closest Related Bacterial Species
genome phylogenetics taxonomy written 8.6 years ago by Greg50 • updated 19 months ago by Biostar ♦♦ 20
9
votes
0
answers
3.6k
views
5 follow
0
answers
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