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<prev • 46 results • page 1 of 2 • next >
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TCGAbiolinks problem downloading ASCAT2 data
tcgabiolinks tcga written 10 weeks ago by berry • 20 • updated 10 weeks ago by bruce.moran • 840
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98
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Downloading miRNA data using TCGABiolinks
tcgabiolinks tcga mirna written 3 months ago by mjdm • 0
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1
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How to get CDE ID corresponds to each column feature of clinical data from TCGA
tcgabiolinks bioconductor tcga cde clinical written 2.9 years ago by Fdota • 0 • updated 4 months ago by Kevin Blighe ♦ 63k
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1
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174
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Discrepancies in TCGAbiolinks subtype data
tcgabiolinks tcga subtype summarizedexperiment written 6 months ago by atakanekiz • 250
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Error in createMAE function: non-unique values when setting 'row.names' in TCGA LIHC Data
tcgabiolinks tcga elmer written 6 months ago by J. Smith • 50
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132
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[TCGAbiolinks] miRNA expression analysis error: unidentified columns
tcgabiolinks written 6 months ago by tissueboxlotion • 0
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153
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How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
tcgabiolinks pipelines selection mutations hg19 written 6 months ago by nazaninhoseinkhan • 410
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1
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352
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1
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How to analyze TCGA data downloaded by TCGA2STAT using TCGAbiolinks package
tcga2stat tcgabiolinks summarizedexperiment written 6 months ago by J. Smith • 50 • updated 6 months ago by Kevin Blighe ♦ 63k
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151
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which file format is required for TCGAbiolinks package
tcgabiolinks R clinicaldata written 7 months ago by husainbioinfos • 0
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239
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TCGAbiolinks Normalization Error
tcgabiolinks normalization dea rna-seq written 7 months ago by kavinkumar21096 • 0
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158
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how to preprocess and normalize clinical data of LUAD using TCGAbiolinks
tcgabiolinks R cancer written 7 months ago by husainmanagori1998 • 0
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256
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TCGA gene models and exon/isoform level expression data
tcgabiolinks gene models tcga rna-seq written 10 months ago by dolevrahat • 30
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671
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Methylation analysis using TCGAbiolinks package
tcgabiolinks methylation written 15 months ago by nazaninhoseinkhan • 410 • updated 13 months ago by zhaoliang0302 • 0
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576
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Differential expression analysis error - TCGAbiolinks
tcgabiolinks tcga brca rna-seq written 14 months ago by Misty • 0 • updated 14 months ago by Biostar ♦♦ 20
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483
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filter patients based on specific mutation using TCGAbiolinks
tcgabiolinks tcga mutation gdcquery written 16 months ago by jamzaleg84 • 40
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TCGA expression data (TPM)
tcgabiolinks tcga tpm expression written 24 months ago by Folder40g • 130 • updated 19 months ago by Israel Barrantes • 790
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885
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GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare rna-seq written 20 months ago by ansari.sarabio • 0 • updated 19 months ago by Biostar ♦♦ 20
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Error while using TCGAanalyze_DMR for >2 groups
tcgabiolinks R gleason score methylation written 23 months ago by mtkk94 • 10
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1.5k
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1
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Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
tcgabiolinks genomicdatacommons tcga written 2.1 years ago by user31888 • 80
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Pruning CNA Data from TCGA
tcgabiolinks dnacopy tcga cnv segmentation written 2.1 years ago by jrlarsen • 0 • updated 2.1 years ago by pbpanigrahi • 190
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How to find patient sample.type in TCGA-PRAD ?
tcgabiolinks sample.type clinical.patient written 2.2 years ago by Björn • 40
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1
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1
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Matched paired DEA analysis of BRCA samples using TCGAbiolinks, works for paired = FALSE but not paired = TRUE
tcgabiolinks R rna-seq written 2.2 years ago by aluesley1 • 50 • updated 2.1 years ago by Kevin Blighe ♦ 63k
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5 follow
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Matched Paired Tumour-Normal DEA of BRCA using data downloaded using TCGAbiolinks
tcgabiolinks R tcga written 2.2 years ago by aluesley1 • 50 • updated 2.2 years ago by Kevin Blighe ♦ 63k
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986
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Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ?
tcgabiolinks xml clinical data written 2.2 years ago by Björn • 40 • updated 2.2 years ago by afsverissimo • 0
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7 follow
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GDC server down???
tcgabiolinks array methylation gdc written 2.2 years ago by Gabriel Wajnberg • 70 • updated 2.2 years ago by Jade • 40
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2.2k
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Subsetting a RangedSummarizedExperiment in R
tcgabiolinks R rangedsummarizedexperiment written 2.2 years ago by aluesley1 • 50 • updated 2.2 years ago by Friederike ♦ 6.0k
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634
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How to link clinical data with DE miRNA data retrieved using TCGAbiolinks
tcgabiolinks clinical mirna written 2.2 years ago by Björn • 40
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8 follow
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TCGAbiolinks TCGA-BRCA RNA-seq clinical data
tcgabiolinks tcga brca rna-seq written 2.2 years ago by Matina • 170 • updated 2.2 years ago by igor ♦ 11k
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702
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How to avoid annotating multiple genes to a single CpG locus?
tcgabiolinks R biomart dna annotation written 2.2 years ago by mathias.heydt • 90 • updated 2.2 years ago by Mike Smith • 1.5k
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963
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TCGAbiolinks download error
tcgabiolinks R tcga written 2.2 years ago by Björn • 40 • updated 2.2 years ago by zx8754 ♦ 9.4k
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