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<prev • 35 results • page 1 of 2 • next >
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Methylation analysis using TCGAbiolinks package
tcgabiolinks methylation written 3 months ago by nazaninhoseinkhan • 370 • updated 9 weeks ago by zhaoliang0302 • 0
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Differential expression analysis error - TCGAbiolinks
tcgabiolinks tcga brca rna-seq written 3 months ago by Misty • 0 • updated 3 months ago by Biostar ♦♦ 20
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filter patients based on specific mutation using TCGAbiolinks
tcgabiolinks tcga mutation gdcquery written 5 months ago by jamzaleg84 • 20
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TCGA expression data (TPM)
tcgabiolinks tcga tpm expression written 13 months ago by Folder40g • 120 • updated 7 months ago by Israel Barrantes • 740
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GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare rna-seq written 9 months ago by ansari.sarabio • 0 • updated 8 months ago by Biostar ♦♦ 20
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Error while using TCGAanalyze_DMR for >2 groups
tcgabiolinks R gleason score methylation written 12 months ago by mtkk94 • 10
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Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
tcgabiolinks genomicdatacommons tcga written 14 months ago by user31888 • 70
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Pruning CNA Data from TCGA
tcgabiolinks dnacopy tcga cnv segmentation written 14 months ago by jrlarsen • 0 • updated 14 months ago by pbpanigrahi • 180
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How to find patient sample.type in TCGA-PRAD ?
tcgabiolinks sample.type clinical.patient written 15 months ago by Björn • 40
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Matched paired DEA analysis of BRCA samples using TCGAbiolinks, works for paired = FALSE but not paired = TRUE
tcgabiolinks R rna-seq written 15 months ago by aluesley1 • 40 • updated 15 months ago by Kevin Blighe ♦ 48k
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Matched Paired Tumour-Normal DEA of BRCA using data downloaded using TCGAbiolinks
tcgabiolinks R tcga written 15 months ago by aluesley1 • 40 • updated 15 months ago by Kevin Blighe ♦ 48k
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Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ?
tcgabiolinks xml clinical data written 15 months ago by Björn • 40 • updated 15 months ago by afsverissimo • 0
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GDC server down???
tcgabiolinks array methylation gdc written 15 months ago by Gabriel Wajnberg • 70 • updated 15 months ago by Jade • 40
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Subsetting a RangedSummarizedExperiment in R
tcgabiolinks R rangedsummarizedexperiment written 15 months ago by aluesley1 • 40 • updated 15 months ago by Friederike ♦ 5.1k
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How to link clinical data with DE miRNA data retrieved using TCGAbiolinks
tcgabiolinks clinical mirna written 15 months ago by Björn • 40
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TCGAbiolinks TCGA-BRCA RNA-seq clinical data
tcgabiolinks tcga brca rna-seq written 15 months ago by Matina • 160 • updated 15 months ago by igor ♦ 8.3k
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How to avoid annotating multiple genes to a single CpG locus?
tcgabiolinks R biomart dna annotation written 15 months ago by mathias.heydt • 90 • updated 15 months ago by Mike Smith • 1.3k
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TCGAbiolinks download error
tcgabiolinks R tcga written 15 months ago by Björn • 40 • updated 15 months ago by zx8754 ♦ 8.2k
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Differentially methylated regions Analysis
tcgabiolinks packages dmr written 18 months ago by David_emir • 360 • updated 18 months ago by noorpratap.singh • 280
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conversion of data.frame object to SummarizedExperiment object
tcgabiolinks R gdc summarizedexperiment written 18 months ago by lawarde.ankita1 • 30 • updated 18 months ago by svlachavas • 580
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help with GDCprepare
tcgabiolinks R gdcprepare gdc written 18 months ago by lawarde.ankita1 • 30
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GDC data for mutation comparison between GBM and LGG using R
tcgabiolinks R gdc mutations tcgaworkflow written 18 months ago by lawarde.ankita1 • 30
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How to get the simple somatic mutation vcf file from GDC data portal?
vcf maf tcgabiolinks gdc mutations written 19 months ago by Vasu • 370
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Accessing legacy data in GDC
tcgabiolinks R rna-seq written 2.3 years ago by fr • 100 • updated 22 months ago by Kevin Blighe ♦ 48k
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Enrichment analysis on TCGA data
tcgabiolinks rna-seq written 2.3 years ago by david.tieri • 0 • updated 23 months ago by Biostar ♦♦ 20
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Question: Rna Raw Count and Gene expression correlation
tcgabiolinks rna-seq edger written 23 months ago by salvatore.digiorgio • 10 • updated 23 months ago by lessismore • 690
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How to get CDE ID corresponds to each column feature of clinical data from TCGA
tcgabiolinks bioconductor tcga cde clinical written 24 months ago by Fdota • 0 • updated 24 months ago by Kevin Blighe ♦ 48k
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Alternatives to TCGAbiolinks todownload the TCGA Data
tcgabiolinks tcga written 2.0 years ago by gokce.ouz • 50 • updated 2.0 years ago by ivivek_ngs • 4.8k
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Error faced for library(TCGAbiolinks)
tcgabiolinks R tcga written 2.0 years ago by gokce.ouz • 50 • updated 2.0 years ago by russhh • 4.7k
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Error in GDCprepare in TCGAbiolinks
tcgabiolinks R written 2.2 years ago by sandhana.krishnan • 0 • updated 2.2 years ago by theresa • 10
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