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<prev • 54 results • page 1 of 2 • next >
5
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Tumor-Normal Matched Pairwise DE using DEseq2
tcgabiolinks deseq2 de written 4 weeks ago by kamalikaray1792 • 10 • updated 6 days ago by Biostar ♦♦ 20
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0
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39
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Functional Annotation using TCGAbiolinks
tcgabiolinks functional annotation written 6 days ago by kamalikaray1792 • 10
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0
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239
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0
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TCGAbiolinks workflow to perform differential expression analysis using limma method
tcgabiolinks R tcga limma rna-seq written 14 days ago by emibaffo • 0
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0
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109
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Paired Tumor and Normal Sample for BRCA-Subtype
tcgabiolinks R tcga written 5 weeks ago by kamalikaray1792 • 10
1
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1
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155
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1
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TCGA gene and mirna expression value
tcgabiolinks written 8 weeks ago by kamalikaray1792 • 10 • updated 8 weeks ago by Barry Digby • 630
3
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1
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160
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1
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GDC TCGA LUAD dataset iCluster.group parameter
tcgabiolinks R icluster tcga dataset written 8 weeks ago by up201505092 • 0 • updated 8 weeks ago by igor ♦ 12k
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160
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Extract Data from RangeSummarizedExperiment
tcgabiolinks R tcga written 10 weeks ago by kamalikaray1792 • 10
0
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0
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172
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0
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TCGAbiolink does not download all the data requested
tcgabiolinks data tcga rna-seq download written 4 months ago by guillepalou4 • 10
1
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1
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320
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1
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TCGAbiolinks problem downloading ASCAT2 data
tcgabiolinks tcga written 7 months ago by berry • 30 • updated 7 months ago by bruce.moran • 860
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260
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0
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Downloading miRNA data using TCGABiolinks
tcgabiolinks tcga mirna written 8 months ago by mjdm • 0
1
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1
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1.8k
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1
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How to get CDE ID corresponds to each column feature of clinical data from TCGA
tcgabiolinks bioconductor tcga cde clinical written 3.3 years ago by Fdota • 0 • updated 9 months ago by Kevin Blighe ♦ 69k
2
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1
answer
256
views
1
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Discrepancies in TCGAbiolinks subtype data
tcgabiolinks tcga subtype summarizedexperiment written 11 months ago by atakanekiz • 260
0
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530
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0
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Error in createMAE function: non-unique values when setting 'row.names' in TCGA LIHC Data
tcgabiolinks tcga elmer written 11 months ago by J. Smith • 50
0
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216
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0
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[TCGAbiolinks] miRNA expression analysis error: unidentified columns
tcgabiolinks written 11 months ago by tissueboxlotion • 0
0
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242
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0
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How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
tcgabiolinks pipelines selection mutations hg19 written 11 months ago by nazaninhoseinkhan • 410
4
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1
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567
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1
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How to analyze TCGA data downloaded by TCGA2STAT using TCGAbiolinks package
tcga2stat tcgabiolinks summarizedexperiment written 11 months ago by J. Smith • 50 • updated 11 months ago by Kevin Blighe ♦ 69k
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213
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which file format is required for TCGAbiolinks package
tcgabiolinks R clinicaldata written 12 months ago by husainbioinfos • 0
0
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0
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369
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0
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TCGAbiolinks Normalization Error
tcgabiolinks normalization dea rna-seq written 12 months ago by kavinkumar21096 • 0
0
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0
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240
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0
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how to preprocess and normalize clinical data of LUAD using TCGAbiolinks
tcgabiolinks R cancer written 12 months ago by husainmanagori1998 • 0
0
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341
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0
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TCGA gene models and exon/isoform level expression data
tcgabiolinks gene models tcga rna-seq written 15 months ago by dolevrahat • 30
0
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1
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933
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1
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Methylation analysis using TCGAbiolinks package
tcgabiolinks methylation written 20 months ago by nazaninhoseinkhan • 410 • updated 18 months ago by zhaoliang0302 • 10
2
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0
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884
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5 follow
0
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Differential expression analysis error - TCGAbiolinks
tcgabiolinks tcga brca rna-seq written 20 months ago by Misty • 0 • updated 19 months ago by Biostar ♦♦ 20
2
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0
answers
602
views
0
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filter patients based on specific mutation using TCGAbiolinks
tcgabiolinks tcga mutation gdcquery written 22 months ago by jamzaleg84 • 40
1
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0
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3.5k
views
0
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TCGA expression data (TPM)
tcgabiolinks tcga tpm expression written 2.4 years ago by Folder40g • 140 • updated 24 months ago by Israel Barrantes • 790
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1.2k
views
0
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GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare rna-seq written 2.1 years ago by ansari.sarabio • 0 • updated 2.0 years ago by Biostar ♦♦ 20
0
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0
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607
views
0
answers
Error while using TCGAanalyze_DMR for >2 groups
tcgabiolinks R gleason score methylation written 2.4 years ago by mtkk94 • 10
3
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1
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1.8k
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1
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Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
tcgabiolinks genomicdatacommons tcga written 2.5 years ago by user31888 • 100
0
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1
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1.2k
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1
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Pruning CNA Data from TCGA
tcgabiolinks dnacopy tcga cnv segmentation written 2.6 years ago by jrlarsen • 0 • updated 2.6 years ago by pbpanigrahi • 190
0
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873
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0
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How to find patient sample.type in TCGA-PRAD ?
tcgabiolinks sample.type clinical.patient written 2.6 years ago by Björn • 50
4
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1
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1.7k
views
6 follow
1
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Matched paired DEA analysis of BRCA samples using TCGAbiolinks, works for paired = FALSE but not paired = TRUE
tcgabiolinks R rna-seq written 2.6 years ago by aluesley1 • 60 • updated 2.6 years ago by Kevin Blighe ♦ 69k
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