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2
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1
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61
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1
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Discrepancies in TCGAbiolinks subtype data
tcgabiolinks tcga subtype summarizedexperiment written 8 days ago by atakanekiz • 190
0
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0
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74
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0
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Error in createMAE function: non-unique values when setting 'row.names' in TCGA LIHC Data
tcgabiolinks tcga elmer written 14 days ago by J. Smith • 0
0
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0
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39
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0
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[TCGAbiolinks] miRNA expression analysis error: unidentified columns
tcgabiolinks written 17 days ago by tissueboxlotion • 0
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0
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44
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0
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How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
tcgabiolinks pipelines selection mutations hg19 written 19 days ago by nazaninhoseinkhan • 390
2
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1
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121
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1
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How to analyze TCGA data downloaded by TCGA2STAT using TCGAbiolinks package
tcga2stat tcgabiolinks summarizedexperiment written 24 days ago by J. Smith • 0 • updated 21 days ago by Kevin Blighe ♦ 54k
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0
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85
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which file format is required for TCGAbiolinks package
tcgabiolinks R clinicaldata written 5 weeks ago by husainbioinfos • 0
0
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0
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75
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0
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TCGAbiolinks Normalization Error
tcgabiolinks normalization dea rna-seq written 6 weeks ago by kavinkumar21096 • 0
0
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0
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72
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0
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how to preprocess and normalize clinical data of LUAD using TCGAbiolinks
tcgabiolinks R cancer written 6 weeks ago by husainmanagori1998 • 0
0
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0
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156
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0
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TCGA gene models and exon/isoform level expression data
tcgabiolinks gene models tcga rna-seq written 4 months ago by dolevrahat • 10
0
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1
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404
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1
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Methylation analysis using TCGAbiolinks package
tcgabiolinks methylation written 9 months ago by nazaninhoseinkhan • 390 • updated 7 months ago by zhaoliang0302 • 0
0
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0
answers
328
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0
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Differential expression analysis error - TCGAbiolinks
tcgabiolinks tcga brca rna-seq written 9 months ago by Misty • 0 • updated 8 months ago by Biostar ♦♦ 20
2
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0
answers
353
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0
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filter patients based on specific mutation using TCGAbiolinks
tcgabiolinks tcga mutation gdcquery written 11 months ago by jamzaleg84 • 20
1
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0
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2.0k
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0
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TCGA expression data (TPM)
tcgabiolinks tcga tpm expression written 18 months ago by Folder40g • 120 • updated 13 months ago by Israel Barrantes • 760
0
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0
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616
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0
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GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare rna-seq written 14 months ago by ansari.sarabio • 0 • updated 13 months ago by Biostar ♦♦ 20
0
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0
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438
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0
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Error while using TCGAanalyze_DMR for >2 groups
tcgabiolinks R gleason score methylation written 17 months ago by mtkk94 • 10
3
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1
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1.1k
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1
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Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
tcgabiolinks genomicdatacommons tcga written 19 months ago by user31888 • 80
0
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1
answer
841
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1
answer
Pruning CNA Data from TCGA
tcgabiolinks dnacopy tcga cnv segmentation written 20 months ago by jrlarsen • 0 • updated 20 months ago by pbpanigrahi • 190
0
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0
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599
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0
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How to find patient sample.type in TCGA-PRAD ?
tcgabiolinks sample.type clinical.patient written 20 months ago by Björn • 40
2
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1
answer
1.1k
views
1
answer
Matched paired DEA analysis of BRCA samples using TCGAbiolinks, works for paired = FALSE but not paired = TRUE
tcgabiolinks R rna-seq written 20 months ago by aluesley1 • 50 • updated 20 months ago by Kevin Blighe ♦ 54k
5
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1
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1.1k
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5 follow
1
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Matched Paired Tumour-Normal DEA of BRCA using data downloaded using TCGAbiolinks
tcgabiolinks R tcga written 20 months ago by aluesley1 • 50 • updated 20 months ago by Kevin Blighe ♦ 54k
2
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1
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819
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1
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Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ?
tcgabiolinks xml clinical data written 20 months ago by Björn • 40 • updated 20 months ago by afsverissimo • 0
8
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1
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2.3k
views
7 follow
1
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GDC server down???
tcgabiolinks array methylation gdc written 20 months ago by Gabriel Wajnberg • 70 • updated 20 months ago by Jade • 40
7
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2
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1.5k
views
2
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Subsetting a RangedSummarizedExperiment in R
tcgabiolinks R rangedsummarizedexperiment written 20 months ago by aluesley1 • 50 • updated 20 months ago by Friederike ♦ 5.3k
0
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0
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540
views
0
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How to link clinical data with DE miRNA data retrieved using TCGAbiolinks
tcgabiolinks clinical mirna written 20 months ago by Björn • 40
12
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2
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1.6k
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8 follow
2
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TCGAbiolinks TCGA-BRCA RNA-seq clinical data
tcgabiolinks tcga brca rna-seq written 20 months ago by Matina • 170 • updated 20 months ago by igor ♦ 9.6k
2
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1
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538
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1
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How to avoid annotating multiple genes to a single CpG locus?
tcgabiolinks R biomart dna annotation written 20 months ago by mathias.heydt • 90 • updated 20 months ago by Mike Smith • 1.4k
2
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1
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773
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1
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TCGAbiolinks download error
tcgabiolinks R tcga written 20 months ago by Björn • 40 • updated 20 months ago by zx8754 ♦ 9.0k
0
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1
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1.1k
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1
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Differentially methylated regions Analysis
tcgabiolinks packages dmr written 23 months ago by David_emir • 370 • updated 23 months ago by noorpratap.singh • 290
1
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1
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1.5k
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1
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conversion of data.frame object to SummarizedExperiment object
tcgabiolinks R gdc summarizedexperiment written 23 months ago by lawarde.ankita1 • 50 • updated 23 months ago by svlachavas • 640
0
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0
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1.1k
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0
answers
help with GDCprepare
tcgabiolinks R gdcprepare gdc written 23 months ago by lawarde.ankita1 • 50
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