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Create workflows for behind the scene processes

R shiny tensorflow written 7 months ago by manali.rupji • 0

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Tutorial: Deep Learning for Cancer Immunotherapy

tutorial keras tensorflow written 7 months ago by Jeremy Leipzig ♦ 17k

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Recent Replies

C: Alignment with bowtie2 but empty .fastq files by RamRS ♦ 17k
I'd still recommend using `./` like so: -1 ./s{21,22,23,24,25,31,32,33,34,35}_1.fq \ -2 ...
C: Alignment with bowtie2 but empty .fastq files by Bastien Hervé • 1.9k
If you're running your command from `/home/luz_garcia_longoria/workspace/` you don't need it in o...
C: Alignment with bowtie2 but empty .fastq files by ATpoint ♦ 7.6k
Good catch, I added a "probably" to my sentence ;-)
C: Alignment with bowtie2 but empty .fastq files by RamRS ♦ 17k
> Using > redirects the stream from bowtie2 to the specified file (aligned_host_parasite.sa...
C: Alignment with bowtie2 but empty .fastq files by luzglongoria • 0
And I am running this command in workspace :)
C: Why are people not working on gene prioritization and candidate gene selection f by Lluís R. • 710
Wasn't this paper https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2006643
C: Alignment with bowtie2 but empty .fastq files by luzglongoria • 0
thank you for your useful comment! My next step is Trinity and I think I need fastq files, isn't...
C: Alignment with bowtie2 but empty .fastq files by Bastien Hervé • 1.9k
Ofc it is an elegant solution but brackets are missing from OP command line
C: Alignment with bowtie2 but empty .fastq files by luzglongoria • 0
the command is bowtie2 --threads 4 --local --no-unal -x /home/luz_garcia_longoria/workspace/...
C: Adding annotation into a transcript in order to use TopHat2 by Bastien Hervé • 1.9k
If I understand correctly, you already did the alignment step using your loligo brachial heart mu...
C: Alignment with bowtie2 but empty .fastq files by luzglongoria • 0
Ok. I though also to do this but I wonder if I am going to alter somehow the BAM files and then t...
A: Alignment with bowtie2 but empty .fastq files by ATpoint ♦ 7.6k
Ok, there is apparently some confusion here: 1) You are right now saving your alignment to `>...

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