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Tutorial:
Deep Learning for Cancer Immunotherapy
written 4 months ago by
Jeremy Leipzig ♦ 17k
Recent Votes
- A: How to sort a VCF file lexicographically by chromosome number?
- C: How to sort a VCF file lexicographically by chromosome number?
- Why we ran DeepVariant as a Nextflow pipeline over cloud.
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- C: GDC server down???
- Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ?
- A: Issue with Bcftools reheader
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- Appreciated to Pierre Lindenbaum ♦ 108k
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Recent Replies
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C: Unknown Stringtie IDs produced when using Ensembl GTF by
freuv • 10
stringtie aligned.bam -v -o output.gtf -p 12 -G Mus_musculus.GRCm38.92.gtf -A abundance.txt -...
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C: Unknown Stringtie IDs produced when using Ensembl GTF by
freuv • 10
They are not MSTRG tags -- they are formatted as STRG.nnnn
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C: Unknown Stringtie IDs produced when using Ensembl GTF by
freuv • 10
Thank you! I will be sure to do this going forward.
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C: Does differential binding analysis across different ChIP-Seq samples makes sense by
goodez • 140
This post is rather old, but I stumbled across it and thought it was an interesting question. You...
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C: Help interpreting Stringtie 'fully covered transcripts' output by
freuv • 10
Would this suggest that there are alternatively spliced transcripts of the same gene present?
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C: What is the normal N50 range when assembly the virus genome. by
archie.w.lee • 40
Thank you so much for your replying and information.
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C: Blast or Blat for multiple sequence alignment to get each respective sequence lo by
Ram ♦ 15k
>I have list of miRNA sequences ... make fasta file for them What format are your sequences i...
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C: What is the normal N50 range when assembly the virus genome. by
archie.w.lee • 40
wow, how did you know the assembly contigs all from human mitochondrial? The total contigs are 4...
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C: Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ? by
genomax ♦ 49k
Install latest version from GitHub. https://www.biostars.org/p/321591/#321748
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A: String editing for output file name by
ttom • 170
What if the output file should be named `SampleA_fastqc.summary` according to the inputs/sample a...
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C: two way get analysis data to get the obvious range difference in IGV by
genomax ♦ 49k
You don't seem to be doing this right. Here is one version I see: https://preview.ibb.co/ciMgfJ...
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A: Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ? by
afsverissimo • 0
According to Bioconductor support website, you need to filter out xml files ` query <- GDCque...
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