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How to read AlignACE result?
alignace discovery motif tfbs dna written 4.6 years ago by allyson1115ar • 20 • updated 4 weeks ago by chernouhov sergey • 40
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How to identify Transcript Factors (TF) binding to my target sequence
tfbs written 3 months ago by Shicheng Guo • 8.0k
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Transcription factor binding site enrichment problem
transcription factor tfbs bioconductor R written 5.1 years ago by nicolas.julien.jung • 10 • updated 3 months ago by avi.maayan • 10
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2
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395
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from coordinate to motif
tfbs motif written 16 months ago by Shuang He • 0 • updated 7 months ago by Alex Reynolds ♦ 29k
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Find Transcription factor binding site for a gene list
R tfbs promoter written 16 months ago by salvatore.raieli2 • 60 • updated 14 months ago by Praneet Chaturvedi • 120
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strand specificity of TFBS
binding transcription factor tfbs motif forum written 4.2 years ago by Chris Gene • 60 • updated 15 months ago by mt1022 • 210
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TF binding site in the Mitochondrial DNA
tfbs tf written 18 months ago by salvatore.raieli2 • 60 • updated 18 months ago by Biostar ♦♦ 20
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Using Transfac Match to predict TF-gene binding relations
tfbs match transfac tf-target written 2.1 years ago by liaimin815 • 0
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663
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TransFac Match usage and TFBS annotation
tfbs match transfac written 2.1 years ago by Aimin Li • 30
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By using JASPAR API and PWMScan which tool is more accuracy to predict transcription factor binding sites
genome tfbs jaspar sequence pwm written 5.5 years ago by michaelchen33 • 20 • updated 2.2 years ago by asntech • 50
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5 follow
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How can I see the distribution of TFBS on specific enhancer in UCSC
gene tfbs ucsc written 2.2 years ago by z17645797947 • 0 • updated 2.2 years ago by simon.vanheeringen • 170
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SNP annotation with TFBS and histone marks
annotation tfbs histonemarks vep snp written 2.4 years ago by LNA • 30 • updated 2.4 years ago by Emily_Ensembl ♦ 20k
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TF binding region in chromatin contacts
gene tfbs next-gen chip-seq sequencing written 2.5 years ago by ankitplusplus • 30
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Extract common TFBS from a list of genes
gene R tfbs transcription factors affymetrix written 2.9 years ago by sofia.figueiredo • 0 • updated 2.9 years ago by WouterDeCoster ♦ 42k
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Problems to find over-represented TFBS with TOUCAN software
transcription factor binding sites tfbs dna written 2.9 years ago by CiAlves • 0 • updated 2.9 years ago by genomax ♦ 76k
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Corresponding TF for Ensembl stable regulatory feature id
ensembl tfbs chip-seq written 3.3 years ago by mariameldova • 0
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Can I use AME - Analysis of Motif Enrichment - for RNA-Seq data?
ame motif enrichment tfbs rna-seq written 4.2 years ago by Chris Gene • 60 • updated 3.3 years ago by ivivek_ngs • 4.9k
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668
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MotifFeatures vs AnnotatedFeatures
ensembl regulatory build tfbs written 3.4 years ago by mariameldova • 0 • updated 3.3 years ago by Biostar ♦♦ 20
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reference genome for TFBS
ensembl tfbs hg19 written 3.4 years ago by mariameldova • 0
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Annotate noncoding regions for 1000 genome data
enhancer tfbs snp written 3.5 years ago by qwzhang0601 • 70 • updated 3.5 years ago by Denise - Open Targets • 5.1k
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TFBS from UCSC vs. other databases
tfbs transfac ucsc written 3.5 years ago by hannafrida.klein • 30 • updated 3.5 years ago by Emily_Ensembl ♦ 20k
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Differnces between PWM derived from SELEX and ChIP-seq
tfbs position weight matrix chip-seq selex written 5.6 years ago by michaelchen33 • 20 • updated 3.6 years ago by Biostar ♦♦ 20
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Aligning TF binding site to target gene method
tfbs prediction written 3.6 years ago by bharata1803 • 450
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Determining Fold Enrichment of TFBS Over Control Sequences
tfbs transcription factors pwms motif searching written 3.8 years ago by ramblingsjones • 0 • updated 3.7 years ago by Biostar ♦♦ 20
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Job: PhD position to work on Gene Expression Regulation, Centre for Molecular Medicine Norway
tfbs gene expression jobs tf cancer written 4.0 years ago by Anthony Mathelier • 880 • updated 3.8 years ago by Istvan Albert ♦♦ 82k
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identifying which SNPs sit in TFBS (Yeast)
bioinformatics tfbs binding site written 4.1 years ago by grins38 • 10 • updated 4.1 years ago by Alex Reynolds ♦ 29k
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Where are the actual transcription factor binding sites located in the CHIP-seq peaks
macs chip-seq peaks tfbs peak calls written 4.2 years ago by Saad Khan • 380 • updated 4.2 years ago by jotan • 1.2k
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Database for C. elegans TFBS
tfbs c.elegans chip-seq database written 4.3 years ago by pengchy • 410 • updated 4.3 years ago by jurgnjn • 70
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5 follow
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Estimate transcription factors binding sites for Drosophila genes
drosophila transcription factor tfbs written 5.7 years ago by EvoGen • 10 • updated 4.3 years ago by Joseph Pearson • 450
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How to generate synthetic transcription factor binding sites (TFBS)?
fasta profile tfbs matrice genome written 4.4 years ago by allyson1115ar • 20
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