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TF binding site in the Mitochondrial DNA
tfbs tf written 4 days ago by salvatore.raieli2 • 30 • updated 5 hours ago by Biostar ♦♦ 20
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286
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Using Transfac Match to predict TF-gene binding relations
tfbs match transfac tf-target written 7 months ago by liaimin815 • 0
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283
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TransFac Match usage and TFBS annotation
tfbs match transfac written 7 months ago by Aimin Li • 30
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By using JASPAR API and PWMScan which tool is more accuracy to predict transcription factor binding sites
genome tfbs jaspar sequence pwm written 4.0 years ago by michaelchen33 • 20 • updated 8 months ago by asntech • 30
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5 follow
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How can I see the distribution of TFBS on specific enhancer in UCSC
gene tfbs ucsc written 8 months ago by z17645797947 • 0 • updated 8 months ago by simon.vanheeringen • 150
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SNP annotation with TFBS and histone marks
annotation tfbs histonemarks vep snp written 10 months ago by LNA • 30 • updated 10 months ago by Emily_Ensembl ♦ 15k
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TF binding region in chromatin contacts
gene tfbs next-gen chip-seq sequencing written 12 months ago by ankitplusplus • 10
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Extract common TFBS from a list of genes
gene R tfbs transcription factors affymetrix written 17 months ago by sofia.figueiredo • 0 • updated 17 months ago by WouterDeCoster ♦ 30k
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705
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Problems to find over-represented TFBS with TOUCAN software
transcription factor binding sites tfbs dna written 17 months ago by CiAlves • 0 • updated 17 months ago by genomax ♦ 52k
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Corresponding TF for Ensembl stable regulatory feature id
ensembl tfbs chip-seq written 21 months ago by mariameldova • 0
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Can I use AME - Analysis of Motif Enrichment - for RNA-Seq data?
ame motif enrichment tfbs rna-seq written 2.7 years ago by Chris Gene • 60 • updated 21 months ago by vchris_ngs • 4.5k
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445
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MotifFeatures vs AnnotatedFeatures
ensembl regulatory build tfbs written 22 months ago by mariameldova • 0 • updated 22 months ago by Biostar ♦♦ 20
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reference genome for TFBS
ensembl tfbs hg19 written 22 months ago by mariameldova • 0
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Annotate noncoding regions for 1000 genome data
enhancer tfbs snp written 2.0 years ago by qwzhang0601 • 60 • updated 2.0 years ago by Denise - Open Targets • 4.5k
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TFBS from UCSC vs. other databases
tfbs transfac ucsc written 2.0 years ago by hannafrida.klein • 30 • updated 2.0 years ago by Emily_Ensembl ♦ 15k
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Differnces between PWM derived from SELEX and ChIP-seq
tfbs position weight matrix chip-seq selex written 4.1 years ago by michaelchen33 • 20 • updated 2.1 years ago by Biostar ♦♦ 20
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Aligning TF binding site to target gene method
tfbs prediction written 2.1 years ago by bharata1803 • 280
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Determining Fold Enrichment of TFBS Over Control Sequences
tfbs transcription factors pwms motif searching written 2.3 years ago by ramblingsjones • 0 • updated 2.2 years ago by Biostar ♦♦ 20
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Job: PhD position to work on Gene Expression Regulation, Centre for Molecular Medicine Norway
tfbs gene expression jobs tf cancer written 2.5 years ago by Anthony Mathelier • 850 • updated 2.3 years ago by Istvan Albert ♦♦ 77k
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identifying which SNPs sit in TFBS (Yeast)
bioinformatics tfbs binding site written 2.6 years ago by grins38 • 10 • updated 2.6 years ago by Alex Reynolds ♦ 24k
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strand specificity of TFBS
binding transcription factor tfbs motif forum written 2.7 years ago by Chris Gene • 60
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Where are the actual transcription factor binding sites located in the CHIP-seq peaks
macs chip-seq peaks tfbs peak calls written 2.7 years ago by Saad Khan • 310 • updated 2.7 years ago by jotan • 1.2k
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Database for C. elegans TFBS
tfbs c.elegans chip-seq database written 2.8 years ago by pengchy • 400 • updated 2.8 years ago by jurgnjn • 70
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Estimate transcription factors binding sites for Drosophila genes
drosophila transcription factor tfbs written 4.2 years ago by EvoGen • 10 • updated 2.8 years ago by Joseph Pearson • 400
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How to generate synthetic transcription factor binding sites (TFBS)?
fasta profile tfbs matrice genome written 2.8 years ago by allyson1115ar • 20
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How to get negative control sequence that are not bound by transcription factor or non-TFBS in UCSC?
gene tfbs negativedata ucsc written 3.1 years ago by allyson1115ar • 20 • updated 2.9 years ago by Biostar ♦♦ 20
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How to read AlignACE result?
alignace discovery motif tfbs dna written 3.1 years ago by allyson1115ar • 20
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How to obtain predicted or lab-verified TFBS in UCSC Genome Browser?
gene tfbs ucsc written 3.1 years ago by allyson1115ar • 20 • updated 3.1 years ago by Maximilian Haeussler • 1.3k
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Over representation of TFBS
bioinformatics tfbs sequence transcription written 3.3 years ago by bionovice • 0 • updated 3.2 years ago by Alex Reynolds ♦ 24k
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Known transcription factor binding sites and enhancer locations in Pigs
enhancer tfbs written 3.2 years ago by Saad Khan • 310 • updated 3.2 years ago by mark.ziemann • 1.1k
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