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Extract common TFBS from a list of genes
gene R tfbs transcription factors affymetrix written 3 months ago by sofia.figueiredo • 0 • updated 3 months ago by WouterDeCoster ♦ 17k
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Problems to find over-represented TFBS with TOUCAN software
transcription factor binding sites tfbs dna written 3 months ago by CiAlves • 0 • updated 3 months ago by genomax ♦ 27k
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Corresponding TF for Ensembl stable regulatory feature id
ensembl tfbs chip-seq written 7 months ago by mariameldova • 0
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Can I use AME - Analysis of Motif Enrichment - for RNA-Seq data?
ame motif enrichment tfbs rna-seq written 19 months ago by Chris Gene • 50 • updated 7 months ago by vchris_ngs • 3.1k
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MotifFeatures vs AnnotatedFeatures
ensembl regulatory build tfbs written 8 months ago by mariameldova • 0 • updated 7 months ago by Biostar ♦♦ 10
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reference genome for TFBS
ensembl tfbs hg19 written 8 months ago by mariameldova • 0
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Annotate noncoding regions for 1000 genome data
enhancer tfbs snp written 10 months ago by qwzhang0601 • 40 • updated 10 months ago by Denise - Open Targets • 3.7k
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TFBS from UCSC vs. other databases
tfbs transfac ucsc written 10 months ago by hannafrida.klein • 10 • updated 10 months ago by Emily_Ensembl ♦ 11k
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Differnces between PWM derived from SELEX and ChIP-seq
tfbs position weight matrix chip-seq selex written 2.9 years ago by michaelchen33 • 20 • updated 11 months ago by Biostar ♦♦ 10
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Aligning TF binding site to target gene method
tfbs prediction written 11 months ago by bharata1803 • 210
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Background file options using the MEME Suite
genome fimo tfbs meme background frequencies written 12 months ago by af322 • 0
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Determining Fold Enrichment of TFBS Over Control Sequences
tfbs transcription factors pwms motif searching written 14 months ago by ramblingsjones • 0 • updated 12 months ago by Biostar ♦♦ 10
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Job: PhD position to work on Gene Expression Regulation, Centre for Molecular Medicine Norway
tfbs gene expression jobs tf cancer written 15 months ago by Anthony • 780 • updated 14 months ago by Istvan Albert ♦♦ 71k
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identifying which SNPs sit in TFBS (Yeast)
bioinformatics tfbs binding site written 17 months ago by grins38 • 10 • updated 17 months ago by Alex Reynolds ♦ 18k
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strand specificity of TFBS
binding transcription factor tfbs motif forum written 18 months ago by Chris Gene • 50
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Where are the actual transcription factor binding sites located in the CHIP-seq peaks
macs chip-seq peaks tfbs peak calls written 19 months ago by Saad Khan • 310 • updated 19 months ago by jotan • 1.1k
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Database for C. elegans TFBS
tfbs c.elegans chip-seq database written 19 months ago by pengchy • 330 • updated 19 months ago by jurgnjn • 60
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Estimate transcription factors binding sites for Drosophila genes
drosophila transcription factor tfbs written 3.0 years ago by EvoGen • 10 • updated 19 months ago by Joseph Pearson • 360
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How to generate synthetic transcription factor binding sites (TFBS)?
fasta profile tfbs matrice genome written 20 months ago by allyson1115ar • 10
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How to get negative control sequence that are not bound by transcription factor or non-TFBS in UCSC?
gene tfbs negativedata ucsc written 23 months ago by allyson1115ar • 10 • updated 21 months ago by Biostar ♦♦ 10
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How to read AlignACE result?
alignace discovery motif tfbs dna written 22 months ago by allyson1115ar • 10
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How to obtain predicted or lab-verified TFBS in UCSC Genome Browser?
gene tfbs ucsc written 23 months ago by allyson1115ar • 10 • updated 23 months ago by Maximilian Haeussler • 1.2k
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Over representation of TFBS
bioinformatics tfbs sequence transcription written 2.1 years ago by bionovice • 0 • updated 2.0 years ago by Alex Reynolds ♦ 18k
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Known transcription factor binding sites and enhancer locations in Pigs
enhancer tfbs written 2.1 years ago by Saad Khan • 310 • updated 2.0 years ago by mark.ziemann • 790
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Statistically significant TFBS for a particular region
tfbs statistical significance written 2.1 years ago by ancient_learner • 590
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How to find the binding sites for a particular transcription factor among the human genome
tfbs written 2.2 years ago by liuxiaomeng90 • 40 • updated 2.2 years ago by Felix Francis • 400
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Benchmarking TFBS in yeast
tfbs expression pwm benchmark transcription written 2.2 years ago by by0 • 90
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How to visualize the co-occupancy of one set of genomic data with another.
tfbs methylation co-occupancy histone written 2.6 years ago by Saad Khan • 310 • updated 2.4 years ago by Alex Reynolds ♦ 18k
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Transcription factor binding site enrichment problem
transcription factor tfbs bioconductor R written 2.4 years ago by nicolas.julien.jung • 0 • updated 2.4 years ago by Zhilong Jia • 1.0k
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Quick way to find all the TFBS peak data for mouse and Human in GEO
peak geo tfbs ucsc written 2.5 years ago by Saad Khan • 310 • updated 2.5 years ago by Biostar ♦♦ 10
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