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4
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114
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5 follow
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Tutorial: Normalization of BigWig files using TMM from edgeR
deeptools tutorial bigwig edger tmm written 11 days ago by ATpoint ♦ 21k
2
votes
1
answer
243
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5 follow
1
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How to normalized TPM with TMM method?
tpm rna-seq edger tmm written 7 weeks ago by xiaoguang • 10 • updated 10 days ago by Gordon Smyth • 950
2
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0
answers
167
views
0
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CPM plot for individual genes
cpm rna-seq edger tmm written 3 months ago by iraia.munoa • 70 • updated 3 months ago by ATpoint ♦ 21k
2
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2
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396
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2
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TPM and TMM, which should I use for clustering?
tpm clustering tmm written 5 months ago by demoraesdiogo2017 • 10 • updated 5 months ago by Charles Warden ♦ 7.2k
0
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250
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TMM to TPM conversion
tpm tmm written 5 months ago by demoraesdiogo2017 • 10
0
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1
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356
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1
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what is the best method (normalization) to compare RNA-Seq samples from different labs
normalization compare rna-seq tmm written 6 months ago by RS • 0 • updated 6 months ago by Dattatray Mongad • 320
4
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498
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RNA seq - TMM values
rna-seq tmm written 9 months ago by evlampia123x • 0 • updated 9 months ago by RamRS ♦ 23k
2
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1
answer
483
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1
answer
RNA-seq edgeR normalization
normalization rna-seq edger tmm written 14 months ago by GuriGuri1565 • 10 • updated 14 months ago by Devon Ryan ♦ 91k
10
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1
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2.9k
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8 follow
1
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 15 months ago by sam.vanc70 • 30 • updated 15 months ago by Devon Ryan ♦ 91k
0
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668
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edgeR TMM normalization failure
tmm rna-seq edger dge written 18 months ago by pavenhuizen • 70
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1.3k
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0
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Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 22 months ago by Picasa • 460
3
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1
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3.6k
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5 follow
1
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Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 22 months ago by sd.gamboa.t • 30 • updated 22 months ago by Corentin • 380
0
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1
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895
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1
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Regarding TMM normalization before DEG analysis by DEGseq
deg analysis degseq tmm written 24 months ago by seta • 1.2k • updated 24 months ago by theobroma22 • 1.1k
1
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2.5k
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How can I get the normalized counts matrix after doing TMM normalization using edgeR
normalization tmm cpm written 2.6 years ago by debitboro • 110 • updated 2.4 years ago by le2336 • 60
2
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1
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1.5k
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1
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TMM normalisation on a subtset of the data
normlization edger tmm written 3.6 years ago by tomasscheitel • 20 • updated 2.5 years ago by Biostar ♦♦ 20
2
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8
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3.0k
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8
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TMM normalization for RNA seq data with three replicates (2 samples)
replicates edger rna-seq tmm written 3.6 years ago by IrK • 30
5
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1
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3.0k
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1
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How to TMM after HTSeq-count?
htseq rna-seq edger tmm written 3.7 years ago by tinmad • 10 • updated 3.7 years ago by h.mon ♦ 27k
2
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1
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2.1k
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1
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edegR, export TMM normalized method
rpkm tmm rna-seq edger cpm written 3.9 years ago by lilingjoyo • 30 • updated 3.9 years ago by Sam • 2.4k
2
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1
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2.2k
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1
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Comparing TMM and RSEM RNASeq data
rna-seq rsem tmm written 4.2 years ago by leshaker • 0 • updated 4.2 years ago by Ying W • 3.9k
5
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1
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2.5k
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1
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Within-sample comparison of TMM normalized values?
within-sample rna-seq tmm written 4.8 years ago by Ekarl2 • 90 • updated 4.8 years ago by Devon Ryan ♦ 91k
2
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1
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5.0k
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1
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TMM normalisation from RSEM raw counts
rsem rpkm edger rna-seq tmm written 5.2 years ago by AW • 350
5
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1
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5.0k
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6 follow
1
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EdgeR TMM normalisation
rpkm tmm normalisation rna-seq edger written 5.3 years ago by AW • 350 • updated 5.3 years ago by Devon Ryan ♦ 91k
12
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1
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22k
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7 follow
1
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RNA-seq normalization: How to use TMM and rpkm() in EdgeR
normalization tmm rna-seq edger rpkm written 5.3 years ago by AW • 350
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