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2
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1
answer
121
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1
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RNA-seq edgeR normalization
normalization rna-seq edger tmm written 7 weeks ago by GuriGuri1565 • 10 • updated 7 weeks ago by Devon Ryan ♦ 82k
7
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1
answer
408
views
1
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 11 weeks ago by sam.vanc70 • 10 • updated 11 weeks ago by Devon Ryan ♦ 82k
0
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0
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245
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0
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edgeR TMM normalization failure
tmm rna-seq edger dge written 5 months ago by pavenhuizen • 70
0
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0
answers
691
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0
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Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 10 months ago by Picasa • 350
0
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1
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1.4k
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1
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Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 10 months ago by sd.gamboa.t • 0 • updated 10 months ago by Corentin • 150
0
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1
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528
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1
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Regarding TMM normalization before DEG analysis by DEGseq
deg analysis degseq tmm written 11 months ago by seta • 1000 • updated 11 months ago by theobroma22 • 1.1k
1
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0
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1.3k
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0
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How can I get the normalized counts matrix after doing TMM normalization using edgeR
normalization tmm cpm written 19 months ago by debitboro • 80 • updated 16 months ago by le2336 • 60
0
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1
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1.1k
views
1
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TMM normalisation on a subtset of the data
normlization edger tmm written 2.6 years ago by tomasscheitel • 10 • updated 17 months ago by Biostar ♦♦ 20
2
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8
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2.2k
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8
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TMM normalization for RNA seq data with three replicates (2 samples)
replicates edger rna-seq tmm written 2.6 years ago by IrK • 20
5
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1
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2.1k
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1
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How to TMM after HTSeq-count?
htseq rna-seq edger tmm written 2.7 years ago by tinmad • 10 • updated 2.7 years ago by h.mon ♦ 18k
2
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1
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1.6k
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1
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edegR, export TMM normalized method
rpkm tmm rna-seq edger cpm written 2.8 years ago by lilingjoyo • 10 • updated 2.8 years ago by Sam • 2.1k
2
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1
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1.7k
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1
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Comparing TMM and RSEM RNASeq data
rna-seq rsem tmm written 3.2 years ago by leshaker • 0 • updated 3.2 years ago by Ying W • 3.8k
5
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1
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1.9k
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1
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Within-sample comparison of TMM normalized values?
within-sample rna-seq tmm written 3.8 years ago by Ekarl2 • 80 • updated 3.8 years ago by Devon Ryan ♦ 82k
2
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1
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4.1k
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1
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TMM normalisation from RSEM raw counts
rsem rpkm edger rna-seq tmm written 4.2 years ago by AW • 350
5
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1
answer
4.0k
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6 follow
1
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EdgeR TMM normalisation
rpkm tmm normalisation rna-seq edger written 4.3 years ago by AW • 350 • updated 4.3 years ago by Devon Ryan ♦ 82k
12
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1
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20k
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7 follow
1
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RNA-seq normalization: How to use TMM and rpkm() in EdgeR
normalization tmm rna-seq edger rpkm written 4.3 years ago by AW • 350
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