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3
votes
1
answer
188
views
1
answer
which normalization method for my RNA-seq data set?
deseq2 tpm rna-seq edger tmm written 3 months ago by nyoegut • 10 • updated 3 months ago by genomax ♦ 85k
10
votes
2
answers
5.7k
views
9 follow
2
answers
TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 2.1 years ago by sam.vanc70 • 30 • updated 8 months ago by simplitia • 40
2
votes
1
answer
912
views
5 follow
1
answer
How to normalized TPM with TMM method?
tpm rna-seq edger tmm written 12 months ago by xiaoguang • 20 • updated 10 months ago by Gordon Smyth • 1.7k
2
votes
0
answers
541
views
0
answers
CPM plot for individual genes
cpm rna-seq edger tmm written 14 months ago by iraia.munoa • 100 • updated 14 months ago by ATpoint ♦ 36k
2
votes
2
answers
1.1k
views
2
answers
TPM and TMM, which should I use for clustering?
tpm clustering tmm written 16 months ago by demoraesdiogo2017 • 30 • updated 16 months ago by Charles Warden ♦ 7.8k
0
votes
0
answers
644
views
0
answers
TMM to TPM conversion
tpm tmm written 16 months ago by demoraesdiogo2017 • 30
0
votes
1
answer
717
views
1
answer
what is the best method (normalization) to compare RNA-Seq samples from different labs
normalization compare rna-seq tmm written 16 months ago by RS • 0 • updated 16 months ago by Dattatray Mongad • 350
4
votes
0
answers
695
views
0
answers
RNA seq - TMM values
rna-seq tmm written 20 months ago by evlampia123x • 0 • updated 20 months ago by RamRS ♦ 27k
2
votes
1
answer
731
views
1
answer
RNA-seq edgeR normalization
normalization rna-seq edger tmm written 2.0 years ago by GuriGuri1565 • 20 • updated 2.0 years ago by Devon Ryan ♦ 95k
0
votes
0
answers
988
views
0
answers
edgeR TMM normalization failure
tmm rna-seq edger dge written 2.4 years ago by pavenhuizen • 70
0
votes
0
answers
1.6k
views
0
answers
Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 2.7 years ago by Picasa • 530
3
votes
1
answer
4.8k
views
5 follow
1
answer
Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 2.7 years ago by sd.gamboa.t • 30 • updated 2.7 years ago by Corentin • 450
0
votes
1
answer
1.1k
views
1
answer
Regarding TMM normalization before DEG analysis by DEGseq
deg analysis degseq tmm written 2.8 years ago by seta • 1.3k • updated 2.8 years ago by theobroma22 • 1.1k
1
vote
1
answer
3.5k
views
1
answer
How can I get the normalized counts matrix after doing TMM normalization using edgeR
normalization tmm cpm written 3.5 years ago by debitboro • 180 • updated 3.3 years ago by le2336 • 70
2
votes
1
answer
1.8k
views
1
answer
TMM normalisation on a subtset of the data
normlization edger tmm written 4.5 years ago by tomasscheitel • 20 • updated 3.3 years ago by Biostar ♦♦ 20
2
votes
8
answers
3.8k
views
8
answers
TMM normalization for RNA seq data with three replicates (2 samples)
replicates edger rna-seq tmm written 4.5 years ago by IrK • 50
5
votes
1
answer
3.6k
views
1
answer
How to TMM after HTSeq-count?
htseq rna-seq edger tmm written 4.5 years ago by tinmad • 10 • updated 4.5 years ago by h.mon ♦ 30k
2
votes
1
answer
2.6k
views
1
answer
edegR, export TMM normalized method
rpkm tmm rna-seq edger cpm written 4.7 years ago by lilingjoyo • 30 • updated 4.7 years ago by Sam • 2.9k
2
votes
1
answer
2.4k
views
1
answer
Comparing TMM and RSEM RNASeq data
rna-seq rsem tmm written 5.1 years ago by leshaker • 0 • updated 5.1 years ago by Ying W • 4.0k
5
votes
1
answer
2.9k
views
1
answer
Within-sample comparison of TMM normalized values?
within-sample rna-seq tmm written 5.6 years ago by Ekarl2 • 100 • updated 5.6 years ago by Devon Ryan ♦ 95k
2
votes
1
answer
5.6k
views
1
answer
TMM normalisation from RSEM raw counts
rsem rpkm edger rna-seq tmm written 6.1 years ago by AW • 350
5
votes
1
answer
5.7k
views
7 follow
1
answer
EdgeR TMM normalisation
rpkm tmm normalisation rna-seq edger written 6.2 years ago by AW • 350 • updated 6.2 years ago by Devon Ryan ♦ 95k
12
votes
1
answer
23k
views
8 follow
1
answer
RNA-seq normalization: How to use TMM and rpkm() in EdgeR
normalization tmm rna-seq edger rpkm written 6.2 years ago by AW • 350
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