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3
votes
1
answer
188
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1
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which normalization method for my RNA-seq data set?
deseq2 tpm rna-seq edger tmm written 3 months ago by nyoegut10 • updated 3 months ago by genomax85k
10
votes
2
answers
5.7k
views
9 follow
2
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 2.1 years ago by sam.vanc7030 • updated 8 months ago by simplitia40
2
votes
1
answer
912
views
5 follow
1
answer
How to normalized TPM with TMM method?
tpm rna-seq edger tmm written 12 months ago by xiaoguang20 • updated 10 months ago by Gordon Smyth1.7k
2
votes
0
answers
541
views
0
answers
CPM plot for individual genes
cpm rna-seq edger tmm written 14 months ago by iraia.munoa100 • updated 14 months ago by ATpoint36k
2
votes
2
answers
1.1k
views
2
answers
TPM and TMM, which should I use for clustering?
tpm clustering tmm written 16 months ago by demoraesdiogo201730 • updated 16 months ago by Charles Warden7.8k
0
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0
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644
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0
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TMM to TPM conversion
tpm tmm written 16 months ago by demoraesdiogo201730
0
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1
answer
717
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1
answer
4
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0
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695
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0
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RNA seq - TMM values
rna-seq tmm written 20 months ago by evlampia123x0 • updated 20 months ago by RamRS27k
2
votes
1
answer
731
views
1
answer
RNA-seq edgeR normalization
normalization rna-seq edger tmm written 2.0 years ago by GuriGuri156520 • updated 2.0 years ago by Devon Ryan95k
0
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0
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988
views
0
answers
0
votes
0
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1.6k
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0
answers
3
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1
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4.8k
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5 follow
1
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Data for drawing Heatmaps (RNA-seq)
fpkm heatmap tpm rna-seq tmm written 2.7 years ago by sd.gamboa.t30 • updated 2.7 years ago by Corentin450
0
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1
answer
1.1k
views
1
answer
Regarding TMM normalization before DEG analysis by DEGseq
deg analysis degseq tmm written 2.8 years ago by seta1.3k • updated 2.8 years ago by theobroma221.1k
1
vote
1
answer
3.5k
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1
answer
2
votes
1
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1.8k
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1
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TMM normalisation on a subtset of the data
normlization edger tmm written 4.5 years ago by tomasscheitel20 • updated 3.3 years ago by Biostar ♦♦ 20
2
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8
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3.8k
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8
answers
5
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1
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3.6k
views
1
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How to TMM after HTSeq-count?
htseq rna-seq edger tmm written 4.5 years ago by tinmad10 • updated 4.5 years ago by h.mon30k
2
votes
1
answer
2.6k
views
1
answer
edegR, export TMM normalized method
rpkm tmm rna-seq edger cpm written 4.7 years ago by lilingjoyo30 • updated 4.7 years ago by Sam2.9k
2
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1
answer
2.4k
views
1
answer
Comparing TMM and RSEM RNASeq data
rna-seq rsem tmm written 5.1 years ago by leshaker0 • updated 5.1 years ago by Ying W4.0k
5
votes
1
answer
2.9k
views
1
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Within-sample comparison of TMM normalized values?
within-sample rna-seq tmm written 5.6 years ago by Ekarl2100 • updated 5.6 years ago by Devon Ryan95k
2
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1
answer
5.6k
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1
answer
5
votes
1
answer
5.7k
views
7 follow
1
answer
EdgeR TMM normalisation
rpkm tmm normalisation rna-seq edger written 6.2 years ago by AW350 • updated 6.2 years ago by Devon Ryan95k
12
votes
1
answer
23k
views
8 follow
1
answer
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