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90,376 results • Page
1 of 1808
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
37
views
How to interpret multiqc report
QC
multiqc
rna-seq
4 minutes ago by
townsendae
• 0
0
votes
1
reply
93
views
Can you suggest any journal without any publication fee for publishing microbiology and bioinformatics papers?
publications
journals
microbiology
bioinformatics
updated 59 minutes ago by
Mensur Dlakic
★ 10k • written 1 hour ago by
saiki
• 0
1
vote
1
reply
41
views
How to get all microRNA target genes?
miRNA
multimir
microRNA
targetgenes
tarbase
updated 2 hours ago by
i.sudbery
11k • written 12 hours ago by
Katarina
▴ 10
0
votes
0
replies
17
views
When to use majority rule (0.5) and strict (1.0) consensus tree search?
maximum-likelihood
phylogenetics
prottest
2 hours ago by
ddh8602
• 0
1
vote
2
replies
122
views
vcftools intersect vs bedtools intersect
bedtools
vcf
vcftools
2 hours ago by
gpen
• 0
580
votes
155
replies
64k
views
89 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
handbook
tutorial
training
News
updated 2 days ago by
Biostar
10 • written 4.4 years ago by
Istvan Albert
87k
1
vote
4
replies
59
views
How to extract sequences from fasta that have a certain length ?
minlength
fasta
updated 32 minutes ago by
shenwei356
5.8k • written 3 hours ago by
v.berriosfarias
▴ 10
2
votes
5
replies
89
views
Plotting Differential Induced Genes across timepoints in DESEQ2
Bioconductor
DESEQ2
MA
RNA-seq
updated 30 minutes ago by
swbarnes2
9.7k • written 5 hours ago by
raisamathenge
▴ 10
0
votes
0
replies
20
views
Up-to-date GWAS Power Calculator and GWAS power comparison
GWAS
power
4 hours ago by
moxu
▴ 470
0
votes
0
replies
30
views
Tool:
FileSlide.io - Annotating and distributing sequencing data from the web
data-distribution
data-annotation
data-sharing
4 hours ago by
Simon
• 0
0
votes
5
replies
1.6k
views
How to highlight DE genes in plotMD ?
edgeR
plotMD
volcanoplot
mirnaseq
updated 5 hours ago by
raulgcova97
• 0 • written 3.0 years ago by
Björn
▴ 50
5
votes
4
replies
93
views
Forum:
What to put in my Github
Github
updated 3 hours ago by
Ram
32k • written 5 hours ago by
g_virdzek
▴ 10
0
votes
0
replies
19
views
What criteria follow in order to choose the crystaline structure of a molecule
Molecular
Docking
5 hours ago by
roybatty269
• 0
0
votes
1
reply
39
views
Quantify inactivated virus particles
virus
quantification
offtopic
updated 5 hours ago by
ATpoint
47k • written 5 hours ago by
Josep Ollé
• 0
2
votes
2
replies
544
views
Recombination maps for cattle
SNP
IMPUTE2
genome
Assembly
updated 6 hours ago by
Azwan
• 0 • written 18 months ago by
mdyogolos
▴ 10
0
votes
1
reply
36
views
Samtools view filter by reference sequence
samtools
updated 6 hours ago by
Pierre Lindenbaum
135k • written 6 hours ago by
maxrwjones898
• 0
0
votes
0
replies
29
views
How exactly does diffBind count reads?
atacseq
diffbind
7 hours ago by
iamjli
▴ 10
1
vote
8
replies
292
views
Pacbio SRA data format error
Pacbio
SRA
bax2bam
isoseq3
updated 7 hours ago by
GenoMax
99k • written 6 weeks ago by
shounak.chakraborty1990
• 0
0
votes
0
replies
30
views
The effect of heterozygosity on genome alignment
heterozigosity
alignment
bwa
sequence
7 hours ago by
Iseez
• 0
0
votes
2
replies
63
views
Segmentation fault (core dumped) error in MUSCLE
NGS
alignment
fastq
linux
sequence
7 hours ago by
christopherjamessteel1990
• 0
0
votes
1
reply
46
views
Genome sequencing data analysis and assembly L.lactis subsp.lactis strain Lac3
well
updated 8 hours ago by
Mensur Dlakic
★ 10k • written 10 hours ago by
ipb727258
• 0
0
votes
1
reply
65
views
Is it bad practice to change threshold for interaction probability?
STRING
Cytoscape
updated 9 hours ago by
Carlo Yague
5.8k • written 1 day ago by
gemmalouisebaldock
▴ 10
2
votes
2
replies
54
views
bedops wig2bed 'Row begins with a tab or space' error
wig2bed
bedops
convert2bed
updated 8 hours ago by
Alex Reynolds
32k • written 10 hours ago by
a_bis
• 0
0
votes
0
replies
34
views
correlation analysis of a single variable versus multiple variables
correlation
r
RNA-Seq
updated 10 hours ago by
GenoMax
99k • written 10 hours ago by
pinheirofabiano
• 0
0
votes
0
replies
28
views
Demultiplexing Samples With Contaminated Hashtag
scRNAseq
seurat
demultiplexing
10 hours ago by
fouerghi20
▴ 30
0
votes
0
replies
26
views
News:
Noncoding RNA Conference: upcoming abstract deadline
ncRNA
conference
RNA
noncoding
10 hours ago by
rory.johnson
▴ 20
0
votes
2
replies
82
views
Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 11 hours ago by
swbarnes2
9.7k • written 15 hours ago by
Hans
▴ 120
1
vote
0
replies
32
views
Holistic enzyme activity determination with computation
protein
enzymes
bioinformatics
proteomics
11 hours ago by
birbronald9
▴ 10
0
votes
5
replies
101
views
transcription factor activation order
transcription
updated 5 hours ago by
ATpoint
47k • written 11 hours ago by
kenny
• 0
0
votes
0
replies
22
views
JoinMap4 makes a new map every time
joinmap
linkage_mapping
genetic_map
SNP
11 hours ago by
Beetle Editor
• 0
0
votes
1
reply
51
views
LDSC -Genetic correlation, some results all have NA valuies
correlation
ldsc
genetic
gwas
updated 12 hours ago by
Sam
★ 3.4k • written 15 hours ago by
d.s.zimmerman
• 0
0
votes
2
replies
59
views
Can Meta-GWAS summary statistic results be used for Meta-GWAS (For example, METAL)?
METAL
input
Meta-analysis
Meta-GWAS
30 minutes ago by
li
• 0
4
votes
5
replies
188
views
Batch effect correction of 2 studies with different covariates
batch-effect
R
RNA-seq
10 hours ago by
Geo
▴ 20
0
votes
1
reply
62
views
How to get GO terms to specific to perticular biological process
GO
Enrichment
RNA-seq
updated 12 hours ago by
geneticatt
▴ 110 • written 16 hours ago by
BISEP
• 0
1
vote
1
reply
43
views
MemoryError w/ matrix | Smith-Waterman Algorithm Python
Matrix
Smith-Waterman
Python
Memory
Memory-Error
updated 13 hours ago by
Istvan Albert
87k • written 13 hours ago by
Daniel Bell
▴ 10
0
votes
0
replies
44
views
Job:
Informatician / Data Analyst | University of Glasgow
job
data-analyst
13 hours ago by
dariober
12k
1
vote
3
replies
159
views
IndexError: list assignment index out of range | Needleman-Wunsch Algorithm - Python
List
Needleman-Wunsch
Python
DynamicProgramming
updated 13 hours ago by
Istvan Albert
87k • written 3 days ago by
Daniel Bell
▴ 10
1
vote
0
replies
38
views
Violin Plot for Single-cell data, gene expression in different timepoints
violin-plot
gene-expression
R
single-cell
updated 13 hours ago by
GenoMax
99k • written 13 hours ago by
keren.danan
▴ 10
1
vote
2
replies
120
views
Pooling normal data in Mutect2
mutect2
pooling
normal
samples
panelofnormals
7 hours ago by
Michelle
• 0
0
votes
0
replies
33
views
Convert GFF3 to splice junction BED file, for filtering variants multi-sample (RNA-seq) VCF
rna
splice-junction
vcf
14 hours ago by
William
★ 4.8k
2
votes
3
replies
128
views
How to extract all columns of CSQ using split-vep plugin of bcftools?
plugin
samtools
bcftools
vcf
split-vep
updated 14 hours ago by
David Parry
▴ 60 • written 1 day ago by
dare_devil
★ 1.4k
0
votes
0
replies
40
views
integration of single cell RNA-seq and bulk RNA-seq data
RNA-seq
15 hours ago by
ramyak1912
• 0
1
vote
4
replies
104
views
how to extract REF and ALT DNA string around SNV
SNV
motif
14 hours ago by
shangguandong1996
▴ 10
0
votes
0
replies
35
views
GEMINI ISSUE
BIOINFORMATICS
GEMINI
updated 14 hours ago by
GenoMax
99k • written 15 hours ago by
shwetan
• 0
2
votes
0
replies
64
views
Forum:
Bioinformatics startup market analysis
startup
15 hours ago by
gtechbio
▴ 20
0
votes
0
replies
27
views
Minimum enrichment score to take for analysis
Sequencing
Rna-Seq
15 hours ago by
ashwing.kofficial
• 0
0
votes
4
replies
85
views
How to Estimate total variance in, and between RNA-seq datasets?
batch
variance
correction
13 hours ago by
Gabriel
▴ 90
0
votes
1
reply
48
views
Detection of bacterial SNP using regular PCR primers
detection
PCR
SNP
updated 16 hours ago by
David Parry
▴ 60 • written 16 hours ago by
Audrey
▴ 50
1
vote
3
replies
998
views
Can't change coefficient of dds object: error 'coef' should specify same coefficient as in results 'res'
DESeq2
RNA-seq
updated 9 hours ago by
ATpoint
47k • written 19 hours ago by
macielrodriguez2
▴ 30
0
votes
2
replies
135
views
How can I revert back the Ensembl vep annotated positions to vcf positions?
ensembl
VEP
VCF
updated 16 hours ago by
ATpoint
47k • written 2 days ago by
dare_devil
★ 1.4k
90,376 results • Page
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Recent Votes
Answer: Remove reads from bam file that partially covers a region
Answer: Remove reads from bam file that partially covers a region
A: Selecting defined length fasta sequence and excluding them from a dataset
C: Selecting defined length fasta sequence and excluding them from a dataset
Comment: What to put in my Github
Comment: Efficient way to perform fastq filtering of contaminants by read name prior to t
C: How Can I Merge A Large Amount Of Vcf Files?
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Recent Replies
Comment: How to interpret multiqc report
by
townsendae
• 0
Yeah, strange. Maybe just a bug in the program?
Comment: Can Meta-GWAS summary statistic results be used for Meta-GWAS (For example, META
by
li
• 0
Thank you very much for your reply. This is the first time to ask a question in BioStar, so I am not familiar with the format of writing. N…
Answer: How to interpret multiqc report
by
GenoMax
99k
> when I look at the sequence quality histograms showing the mean > quality scores for each bp, I have the majority of my samples > "failin…
Comment: How to extract sequences from fasta that have a certain length ?
by
shenwei356
5.8k
seqkit seq -m 50 -M 100 /path-to/BAC4A_L00M_R1_001.fasta > 100_maxln.fasta
Answer: Can you suggest any journal without any publication fee for publishing microbiol
by
Mensur Dlakic
★ 10k
- https://www.journals.elsevier.com/journal-of-molecular-biology - https://academic.oup.com/bioinformatics (must stay within a page limi…
Answer: How to get all microRNA target genes?
by
i.sudbery
11k
For the purposes of `multimir` "validated" can include any interaction supported by CLASH/PAR-CLIP/AGO-CLIP data. In this case I'm surprise…
Comment: vcftools intersect vs bedtools intersect
by
gpen
• 0
Hello Alex, Bedops looks like a great tool thank you for the suggestion. Why do you opt for the --element-of arg you shared over --inte…
Comment: How to extract sequences from fasta that have a certain length ?
by
GenoMax
99k
That is fine. People can find these solutions via search in future in one spot.
Comment: How to extract sequences from fasta that have a certain length ?
by
v.berriosfarias
▴ 10
THanks so much for your answer, what I need is to make a new fasta that have sequences that have a length range between 50-100. those links…
Comment: What to put in my Github
by
Ram
32k
I prefer `source('~/MyRScripts/myscript.R')` to creating a package and loading it every time. Of course, one should only store reusable cod…
Answer: How to extract sequences from fasta that have a certain length ?
by
GenoMax
99k
See solutions in: https://www.biostars.org/p/79202/<br> https://www.biostars.org/p/329680/<br> https://stackoverflow.com/questions/62066578…
Answer: Plotting Differential Induced Genes across timepoints in DESEQ2
by
raisamathenge
▴ 10
Is it possible that I can compare it using just the stimuli within my colData matrix?
Answer: Plotting Differential Induced Genes across timepoints in DESEQ2
by
raisamathenge
▴ 10
I have had problems with using an interaction term between stimulus and timepoint that was not able to run as well. How can I fix that? I w…
Comment: What Coverage allele-fraction threshold to use?
by
kristina.mahan
▴ 130
The sequencing coverage is >200x
Answer: Plotting Differential Induced Genes across timepoints in DESEQ2
by
swbarnes2
9.7k
I don't think you need the "1" in the design; I've never seen that in any DESeq tutorial. What your design will do is compare the betas to…
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