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731 results • Page
1 of 15
Sort: Rank
Rank
Views
Votes
Replies
2
votes
1
reply
301
views
Tool:
TGSFilter, An ultra-fast and efficient tool for long reads filtering and trimming
genome-assembly
filtering
reads
trimming
updated 4 days ago by
Yingzi
• 0 • written 5 days ago by
Huiyang
▴ 180
0
votes
0
replies
191
views
Tool:
MicrobiomePhylo: A Comprehensive Platform for Advanced Microbiome Amplicon Sequencing Data Analysis and Visualization
microbiome
analysis
data
16S
5 days ago by
camillatafuro
• 0
82
votes
46
replies
8.3k
views
15 follow
Tool:
ChatGPT optimized for bioinformatics questions
gpt
updated 15 days ago by
LauferVA
4.1k • written 9 months ago by
Sasha
▴ 830
5
votes
2
replies
2.5k
views
Tool:
Coovar: Co-Occurring Variant Analyzer
snp
variant-annotation
updated 22 days ago by
GenoMax
140k • written 11.4 years ago by
Christian
★ 3.0k
1
vote
4
replies
355
views
Tool:
A c library for reading and writing sequences in fasta and fastq format.
seqio
23 days ago by
dwpeng
• 0
1
vote
0
replies
216
views
Tool:
HFKReads, an ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
kmer
organelle
metagenomic
assembly
4 weeks ago by
Huiyang
▴ 180
0
votes
0
replies
241
views
Tool:
Microbiome Analysis: Comprehensive 16S Meta-barcoding Analysis in R with Phyloseq - On Sale Now!
R
microbiome
16S
phyloseq
analysis
27 days ago by
camillatafuro
• 0
0
votes
0
replies
148
views
Tool:
Annotating the epitope-specificity of TCRs with bioinformatics
Annotation
TCR
Epitope-specificity
6 weeks ago by
tim
• 0
10
votes
12
replies
1.6k
views
Tool:
PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
bam
paf
depth
cram
coverage
6 weeks ago by
Huiyang
▴ 180
1
vote
0
replies
195
views
Tool:
gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert
gff
gtf
bed
7 weeks ago by
alejandrogzi
▴ 120
3
votes
8
replies
597
views
Tool:
Generate unit-tested, ready-to-run pipelines using natural language prompting
NGS
pipeline
genomics
cloud
AI
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
Kevin
▴ 50
3
votes
0
replies
168
views
Tool:
GW: fast genome browser and variant exploration tool
genome
genomics
variant-annotation
genome-browser
visualization
8 weeks ago by
clealk
▴ 50
1
vote
0
replies
190
views
Tool:
BIRCH3.90 - BioLegato, Apple Silicon, Updates
genomics
sequence
transcriptomics
9 weeks ago by
brian.fristensky
▴ 460
0
votes
0
replies
169
views
Tool:
Get `BPCells` with Bioconductor workflow
single
cell
BPCells
9 weeks ago by
Yun
• 0
1
vote
3
replies
601
views
Tool:
retroSeeker: discovering a large set of retrotransposons in humans and any species
Mobile-element
Evolution
Retrotransposon
10 weeks ago by
lsp03yjh
▴ 860
1
vote
0
replies
233
views
Tool:
tinybio in OpenAI App Store
gpt
11 weeks ago by
Sasha
▴ 830
0
votes
0
replies
839
views
Tool:
What do you think about Tfinder? a tool to find individual motifs in DNA sequence. Help us ameliorate
Motifs
Transcription-factor
updated 3 months ago by
Ram
43k • written 3 months ago by
Naima
• 0
0
votes
2
replies
341
views
Tool:
Dot_plot_like_in_BLAST, a standalone tool for making dot plots similar to what online BLAST makes
Megablast
Blastn
dot
plot
dotplot
BLAST
updated 3 months ago by
Ram
43k • written 3 months ago by
shelkmike
★ 1.2k
1
vote
0
replies
226
views
Tool:
De Novo assembler (in C, supports MPI parallelism) available for experimenting with
de-novo
trie
olc
updated 3 months ago by
Ram
43k • written 3 months ago by
Graham
▴ 10
4
votes
0
replies
426
views
Tool:
NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
gene-annotation
exon-length
3 months ago by
alejandrogzi
▴ 120
9
votes
4
replies
2.2k
views
Tool:
SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta
sequences
java
4 months ago by
Hugo
▴ 380
0
votes
0
replies
521
views
Tool:
deepBreaks: a machine learning tool for identifying and prioritizing genotype-phenotype associations
python
genetics
updated 4 months ago by
Ram
43k • written 4 months ago by
Mahdi
• 0
1
vote
1
reply
366
views
Tool:
Coremine Medical Introduction - connect - discover - share | explore and visualize associations
drug-target
drug
gene
updated 4 months ago by
Ram
43k • written 4 months ago by
Coremine Medical
▴ 20
0
votes
0
replies
222
views
Tool:
massSight: A tool to combine LC-MS datasets
qc
metabolomics
omics
R
lc-ms
4 months ago by
Chiraag
• 0
0
votes
0
replies
261
views
Tool:
Coremine Medical used in study to discover differentially expressed genes in multiple sclerosis
drugs
drug-targets
genes
4 months ago by
Coremine Medical
▴ 20
0
votes
0
replies
290
views
Tool:
Introducing SpectraView - a tool to transform your literature reviews!
gene
protein
drug-discovery
updated 5 months ago by
Ram
43k • written 5 months ago by
DrugDiscoveryTech
• 0
4
votes
0
replies
341
views
Tool:
MyBrain-Seq: A Pipeline for MiRNA-Seq Data Analysis in Neuropsychiatric Disorders
mybrain-seq
miRNA-seq
pipeline
neuropsychiatry
docker
5 months ago by
dannyzimm
▴ 50
12
votes
4
replies
994
views
Tool:
BBTools 39.03 released!
BBTools
BBMap
5 months ago by
Brian Bushnell
20k
2
votes
2
replies
558
views
Tool:
Python and R without installing apps
Resources
updated 6 months ago by
jena
▴ 290 • written 6 months ago by
gallardodiazmiriam
▴ 20
0
votes
0
replies
277
views
Tool:
MTMCSKAT package for GWAS with efficient resampling, parallelization
SKAT
MTMC-SKAT
updated 6 months ago by
Ram
43k • written 6 months ago by
michael.nagle
▴ 100
11
votes
2
replies
737
views
Tool:
Pipeline Generator
gpt
updated 7 months ago by
LauferVA
4.1k • written 7 months ago by
Sasha
▴ 830
13
votes
6
replies
5.1k
views
Tool:
csvtk - a cross-platform, efficient, practical and pretty CSV/TSV toolkit
CSV
Golang
TSV
7 months ago by
shenwei356
8.4k
3
votes
1
reply
717
views
Tool:
pyGenomeViz - A genome visualization python package for comparative genomics
genome
comparative-genomics
python
microbial-genomics
visualization
updated 10 weeks ago by
n.s.j.vandervelden
▴ 90 • written 7 months ago by
moshi
▴ 150
9
votes
9
replies
4.4k
views
Tool:
pyCirclize - Circular visualization in Python
visualization
circos
matplotlib
genome
python
updated 7 months ago by
shuo
• 0 • written 15 months ago by
moshi
▴ 150
0
votes
2
replies
6.9k
views
Tool:
The script to install the required packages for gene expression analysis using DESeq2 for downstream analysis and visualization
R
RNAseq
installation
DESeq2
7 months ago by
Aditya naman
• 0
1
vote
0
replies
539
views
Tool:
Create realistic VCF genomic data in just a few lines of Python code
genomic
linkage
python
vcf
tool
disequilibrium
7 months ago by
Rémy
▴ 10
1
vote
2
replies
3.5k
views
Tool:
How Study Aromatic-Aromatic Interactions And Amino-Aromatic Interactions Of Protein-Ligands Complexes In The Pdb.
pdb
updated 8 months ago by
Jiyao Wang
▴ 370 • written 10.4 years ago by
bagaruwa
• 0
3
votes
2
replies
718
views
Tool:
Launched: Genozip 15 with co-compression of BAM and FASTQ
BAM
CRAM
compression
FASTQ
updated 9 months ago by
DBScan
▴ 300 • written 9 months ago by
Divon
▴ 230
0
votes
1
reply
474
views
Tool:
tinybio added sources & chat history - (ChatGPT optimized for bioinformatics questions)
gpt
updated 6 days ago by
Shaunak
• 0 • written 9 months ago by
Sasha
▴ 830
7
votes
4
replies
2.8k
views
Tool:
TreeView3 - An update to java TreeView
TreeView3
java
updated 7 months ago by
nach.mcnach
▴ 10 • written 5.7 years ago by
rleach
▴ 180
0
votes
0
replies
350
views
Tool:
Unleashing the Power of Custom NGS Software for Cutting-Edge Research
DNAseq
pipeline
bisulfiteSeq
RNAseq
updated 9 months ago by
rpolicastro
13k • written 9 months ago by
David Langenberger
11k
5
votes
3
replies
815
views
Tool:
Experiment Generator
gpt
updated 9 months ago by
LauferVA
4.1k • written 9 months ago by
Sasha
▴ 830
0
votes
0
replies
474
views
Tool:
Easy API For Running Bioinformatics Jobs Via Python In The Cloud
api
execution
10 months ago by
Sasha
▴ 830
0
votes
0
replies
440
views
Tool:
Single-cell RNA-seq data analysis tool Cellenics®
single-cell
RNA-seq
scRNA-seq
updated 10 months ago by
Ram
43k • written 10 months ago by
Anastasija
• 0
0
votes
1
reply
951
views
Tool:
web app for user-friendly analysis of 16S rRNA gene meta-barcoding NGS data - bacterial microbiome
qiime2
16s
microbiome
ngs
updated 10 months ago by
Ram
43k • written 10 months ago by
camillatafuro
• 0
1
vote
2
replies
820
views
Tool:
Tinybio Slackbot - a large language model slackbot for bioinformatics
qa
10 months ago by
Sasha
▴ 830
0
votes
0
replies
429
views
Tool:
shinyCircos-V2.0: leveraging the creation of Circos plot with enhanced usability and advanced features
shinyCircos
visualization
Circular
Circos
genome
10 months ago by
Andrewoods
▴ 110
362
votes
82
replies
143k
views
35 follow
Tool:
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel
next-gen
ngs
updated 3 days ago by
jena
▴ 290 • written 11.1 years ago by
ole.tange
★ 4.4k
0
votes
0
replies
3.3k
views
Tool:
euka: Robust detection of eukaryotic taxa from modern and ancient environmental DNA using pangenomic reference graphs.
pangenomics
vg
sedaDNA
graph
environmental-DNA
updated 11 months ago by
Ram
43k • written 11 months ago by
Nicola
▴ 10
0
votes
1
reply
412
views
Tool:
TRcaller : a novel Tool for SSR /STR/TR genotyping from NGS data for short and long reads
SSR
NGS
genotype
STR
updated 11 months ago by
Ram
43k • written 11 months ago by
Xuewen
• 0
731 results • Page
1 of 15
Recent Votes
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
F*up Night style events for Bioinformatics ? Comment if you're interested!
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Volume II
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
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svlachavas
▴ 780
Teacher
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160k
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▴ 460
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Recent Replies
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
Mohamed Abderrahmane
▴ 10
Ah ok, I can see now, thanks, have a good day!
Comment: Error running local blastn in R using system2
by
Harrison
• 0
Also, `nt_euk.nal` is just one file. There are other `nt_euk` files in my directory with different extensions (`.ndb`, `.nos`, `.not`, `.nt…
Comment: Error running local blastn in R using system2
by
Harrison
• 0
Yes, in my actual script I use the whole path to nt_euk. I was just showing `C:/data/nt_euk` as shorthand for the full path. There are no s…
Comment: Error running local blastn in R using system2
by
Harrison
• 0
I am seeing `'cat' is not recognized as an internal or external command, operable program or batch file.`
Comment: Alignment with new reference
by
GenoMax
140k
> I'd like to realign my sequences to a reference that doesn't include > the base segment corresponding to the enzyme interval. How can I >…
Comment: How do I get the gene annotations as a text file from a genebank file?
by
GenoMax
140k
You will have to use a programming approach. BioPython is one option: https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/…
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
GenoMax
140k
> Is it because implementing multi-threading requires additional effort on their part Yes but in addition considerations here are importan…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Madelaine Gogol
5.3k
That sounds fun, and I've got some of these that I have told many people about (to keep them from making the same mistakes as me). I am pla…
Comment: Mapping ortholog human and mouse transcript
by
1769mkc
★ 1.2k
for hgnc and ensembl that can be done for transcript id for human to mouse ortholog its difficult to parse and map the exact version from g…
Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
by
Mensur Dlakic
★ 26k
Take it from someone who has hosted both a successful and a failed research topic: these deadlines are unrealistic. I am guessing you are p…
Answer: Tissue specific mRNA expression dataset in human and mouse
by
BioinfGuru
★ 1.6k
Awesome, years ago I wrote my thesis on the use of Tau to calculate tissue specificity, enjoy! The supplementary materials in the paper is…
Answer: Mapping ortholog human and mouse transcript
by
BioinfGuru
★ 1.6k
That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
Comment: Nanopore multisample variant calling
by
emilydolivo97
• 0
hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
Comment: How do I get the gene annotations as a text file from a genebank file?
by
BioinfGuru
★ 1.6k
Can you upload or post a link to the genbank file please?
Comment: Mapping ortholog human and mouse transcript
by
manaswwm
▴ 490
I usually perform biomaRt queries with their `getBM()` function where I list the input using `filter` and `values` option and my request in…
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