Tool:
pySEACR
7 days ago by
Adam
▴
20
2
votes
0
replies
178
views
2
votes
3
replies
452
views
2
votes
1
reply
329
views
0
votes
0
replies
218
views
82
votes
46
replies
8.6k
views
15 follow
5
votes
2
replies
2.5k
views
1
vote
4
replies
397
views
1
vote
0
replies
228
views
0
votes
0
replies
264
views
0
votes
0
replies
158
views
9 weeks ago by
tim
•
0
10
votes
12
replies
1.7k
views
1
vote
0
replies
234
views
10 weeks ago by
alejandrogzi
▴
120
3
votes
8
replies
663
views
3
votes
0
replies
208
views
11 weeks ago by
clealk
▴
50
1
vote
0
replies
207
views
11 weeks ago by
brian.fristensky
▴
460
0
votes
0
replies
191
views
1
vote
3
replies
639
views
3 months ago by
lsp03yjh
▴
860
1
vote
0
replies
256
views
0
votes
0
replies
849
views
0
votes
2
replies
372
views
1
vote
0
replies
238
views
4
votes
0
replies
452
views
4 months ago by
alejandrogzi
▴
120
9
votes
4
replies
2.3k
views
0
votes
0
replies
533
views
1
vote
1
reply
378
views
Tool:
Coremine Medical Introduction - connect - discover - share | explore and visualize associations
updated 5 months ago by
Ram
43k
•
written 5 months ago by
Coremine Medical
▴
20
0
votes
0
replies
231
views
0
votes
0
replies
269
views
0
votes
0
replies
307
views
updated 5 months ago by
Ram
43k
•
written 6 months ago by
DrugDiscoveryTech
•
0
4
votes
0
replies
358
views
12
votes
4
replies
1.1k
views
Tool:
BBTools 39.03 released!
6 months ago by
Brian Bushnell
20k
2
votes
2
replies
580
views
updated 7 months ago by
jena
▴
290
•
written 7 months ago by
gallardodiazmiriam
▴
20
0
votes
0
replies
286
views
updated 7 months ago by
Ram
43k
•
written 7 months ago by
michael.nagle
▴
100
11
votes
2
replies
756
views
Tool:
Pipeline Generator
13
votes
6
replies
5.1k
views
8 months ago by
shenwei356
8.4k
3
votes
1
reply
775
views
updated 3 months ago by
n.s.j.vandervelden
▴
90
•
written 8 months ago by
moshi
▴
150
9
votes
9
replies
4.5k
views
0
votes
2
replies
7.3k
views
1
vote
0
replies
555
views
1
vote
2
replies
3.5k
views
updated 9 months ago by
Jiyao Wang
▴
370
•
written 10.5 years ago by
bagaruwa
•
0
3
votes
2
replies
763
views
0
votes
1
reply
485
views
7
votes
4
replies
2.9k
views
updated 8 months ago by
nach.mcnach
▴
10
•
written 5.8 years ago by
rleach
▴
180
0
votes
0
replies
360
views
updated 10 months ago by
rpolicastro
13k
•
written 10 months ago by
David Langenberger
11k
5
votes
3
replies
830
views
Tool:
Experiment Generator
0
votes
0
replies
483
views
0
votes
0
replies
452
views
updated 11 months ago by
Ram
43k
•
written 11 months ago by
Anastasija
•
0
0
votes
1
reply
969
views
Tool:
web app for user-friendly analysis of 16S rRNA gene meta-barcoding NGS data - bacterial microbiome
updated 11 months ago by
Ram
43k
•
written 11 months ago by
camillatafuro
•
0
1
vote
2
replies
839
views
0
votes
0
replies
446
views
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Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
yueli7
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Recent Replies
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1
Here's the JSON from your search query:
```
{
"query": {
"type": "grou…
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
•
0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
Comment: DEG analysis of RNA-seq data across multiple tissues and two conditions
by
BioinfGuru
★
1.7k
great guidance ... thank you
Comment: error in CPC2
by
Ram
43k
Ashok, what is CPC2? Please edit your post and add as much context as you can.
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