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topGO geneSelectionFun error
genesel R topgo written 23 hours ago by ig.yakunin • 0
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159
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Error when I load my own data using ViSEAGO create_topGO
R topgo viseago rna-seq ontology written 12 weeks ago by srs204 • 0
1
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195
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1
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TopGO KS test,0 significant hit but rank ahead?
gene R topgo written 6 months ago by Liyo • 0 • updated 6 months ago by h.mon ♦ 29k
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136
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Understanding WeightFisher and padj output from topGO
topgo p value goterms weightfisher padj written 6 months ago by kehoe • 0
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3
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3
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Help! Gene Ontology Enrichment Analysis
goexpress R topgo microarray ontology written 2.9 years ago by ab123 • 40 • updated 7 months ago by EagleEye ♦ 6.6k
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255
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1
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Bias in GO enrichment analysis for non-model organsim?
interproscan gene ontology topgo go enrichment written 8 months ago by yh362 • 30 • updated 8 months ago by Philipp Bayer ♦ 6.6k
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3
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550
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3
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Visualisation of GO Terms
gene ontology topgo go written 11 months ago by miles.thorburn • 90
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2
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ReviGO down, any alternatives for GO enrichment condensing?
revigo simrel topgo go enrichment written 11 months ago by Biogeek • 380 • updated 11 months ago by Berghopper • 20
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1
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6 follow
1
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GO analysis using topGO Arabidopsis
geneontology goenrichment topgo rna-seq written 2.9 years ago by Sreeraj Thamban • 140 • updated 12 months ago by Kevin Blighe ♦ 56k
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1
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572
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1
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Using the Correct Ensembl Organism Database in topGO in R
R bioconductor topgo ensembl written 13 months ago by miles.thorburn • 90 • updated 13 months ago by h.mon ♦ 29k
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254
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Many redundant lines in a genes2GO mapping file, is it normal and will it influence my topGo enrichment ?
topgo rna-seq written 15 months ago by david.roux • 40 • updated 14 months ago by Biostar ♦♦ 20
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TopGO Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq written 16 months ago by jomagrax • 30
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3.6k
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GO analysis using topGO
gene R goenrichment topgo go written 16 months ago by mannoulag1 • 60 • updated 16 months ago by Kevin Blighe ♦ 56k
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How to combine all three Ontology classes (BP, MF and CC) in a single analysis ?
topgo go written 16 months ago by User1029725 • 100
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5 follow
1
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TOPGO- how to do GO enrichment using a custom go database?
R gene ontology topgo go enrichment rna-seq written 16 months ago by ahmad.iut • 80 • updated 16 months ago by ahmad mousavi • 470
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1
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812
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1
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issues regarding topGO usage
topgo written 21 months ago by prakashpandey1111 • 0 • updated 21 months ago by Kevin Blighe ♦ 56k
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772
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topGO error with uniprot ID's
R topgo topgouniprot written 23 months ago by MH • 0 • updated 22 months ago by Biostar ♦♦ 20
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533
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GOTerm enrichment rna-seq data
log fold change topgo rna-seq goterm lfc written 23 months ago by studyfranco • 0 • updated 23 months ago by h.mon ♦ 29k
4
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1
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2.2k
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5 follow
1
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topGO is performing enrichment test on GO terms that are not present in my dataset
R bioconductor gene ontology topgo written 2.2 years ago by Fabio Marroni • 2.5k • updated 2.2 years ago by Pablo Markaide • 20
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4
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2.6k
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5 follow
4
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Problem with topGO: GO term enrichment analysis
R bioconductor topgo go error written 2.6 years ago by cristian • 240 • updated 2.2 years ago by adnbps • 10
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2
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topGo Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq edger written 2.5 years ago by Ric • 290
3
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1
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983
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1
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topGO allGenes argument
R topgo rna-seq edger written 2.5 years ago by Ric • 290 • updated 2.5 years ago by e.rempel • 800
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1.3k
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data set geneList not found, problem in the topGO tutorial
functional genomics bioconductor topgo go all written 2.7 years ago by cristian • 240
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topGO: GO terms but no P-value score
R gene ontology topgo written 2.7 years ago by khhgng • 60
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613
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0
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Retrieving Annotation data from runTest() created object
deseq2 topgo gene ontology rna-seq written 2.8 years ago by Sreeraj Thamban • 140
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How to rank genes prepared for GSEA analysis with TopGO
topgo gsea rna-seq written 2.8 years ago by wangdp123 • 230 • updated 2.8 years ago by YaGalbi • 1.5k
3
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3
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1.9k
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3
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Retrieving the gene list related to all GO ID
R gene ontology topgo rna-seq written 2.9 years ago by Sreeraj Thamban • 140 • updated 2.9 years ago by e.rempel • 800
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Using Plant GO Slim in topGO
plant go slim gene ontology topgo arabidopsis written 2.9 years ago by Sreeraj Thamban • 140
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1
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Errors when extracting significant genes per GO.id from topgo data
R bioconductor topgo rna-seq written 3.1 years ago by tiago211287 • 1.2k
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1.7k
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Can't find GO annotation with topGO
R bioconductor topgo go gene-ontology written 3.3 years ago by bvernot • 10
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