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3
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topGO GO enrichment analysis for common DEGs from multiple pairwise comparisons
ensembl biomart topgo go enrichment written 23 days ago by anikng • 0 • updated 23 days ago by antonioggsousa • 1.3k
1
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1
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128
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1
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How do I extract the p-value from runTest() in the TopGO package?
R topgo statistics written 3 months ago by ktm • 0
0
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1
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248
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1
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gene-to-GO mappings with topGO gene set enrichment analysis
R topgo gsea gen to go mapping written 4 months ago by jose.wo • 0 • updated 3 months ago by Kevin Blighe ♦ 65k
0
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2
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173
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2
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Don't let TopGo to trimm long GO names
software error next-gen goenrichment topgo rna-seq written 3 months ago by morteza.aslanzadeh • 10
4
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2
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229
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2
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Retrieving GO mappings for GOseq analysis with non-native organism
topgo gff gene ontology gaf goseq written 3 months ago by thomas.welch • 20
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0
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160
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topGO analysis "MF" term error
R topgo rna-seq go written 3 months ago by sim.j.baum • 50
0
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1
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273
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1
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topGO geneSelectionFun error
genesel R topgo written 5 months ago by ig.yakunin • 0
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0
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451
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Error when I load my own data using ViSEAGO create_topGO
R topgo viseago rna-seq ontology written 8 months ago by srs204 • 0
1
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299
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1
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TopGO KS test,0 significant hit but rank ahead?
gene R topgo written 11 months ago by Liyo • 0 • updated 11 months ago by h.mon ♦ 31k
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0
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253
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0
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Understanding WeightFisher and padj output from topGO
topgo p value goterms weightfisher padj written 12 months ago by kehoe • 20
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3
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2.2k
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3
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Help! Gene Ontology Enrichment Analysis
goexpress R topgo microarray ontology written 3.3 years ago by ab123 • 40 • updated 13 months ago by EagleEye ♦ 6.7k
1
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1
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330
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1
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Bias in GO enrichment analysis for non-model organsim?
interproscan gene ontology topgo go enrichment written 14 months ago by yh362 • 30 • updated 14 months ago by Philipp Bayer ♦ 6.7k
2
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3
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914
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3
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Visualisation of GO Terms
gene ontology topgo go written 17 months ago by miles.thorburn • 100
4
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2
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2.2k
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2
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ReviGO down, any alternatives for GO enrichment condensing?
revigo simrel topgo go enrichment written 17 months ago by Biogeek • 400 • updated 17 months ago by Berghopper • 20
8
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4.2k
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6 follow
1
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GO analysis using topGO Arabidopsis
geneontology goenrichment topgo rna-seq written 3.4 years ago by Sreeraj Thamban • 160 • updated 17 months ago by Kevin Blighe ♦ 65k
2
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1
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975
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1
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Using the Correct Ensembl Organism Database in topGO in R
R bioconductor topgo ensembl written 18 months ago by miles.thorburn • 100 • updated 18 months ago by h.mon ♦ 31k
0
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324
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Many redundant lines in a genes2GO mapping file, is it normal and will it influence my topGo enrichment ?
topgo rna-seq written 21 months ago by david.roux • 40 • updated 19 months ago by Biostar ♦♦ 20
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1.1k
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0
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TopGO Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq written 21 months ago by jomagrax • 30
6
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1
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5.8k
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1
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GO analysis using topGO
gene R goenrichment topgo go written 22 months ago by mannoulag1 • 60 • updated 22 months ago by Kevin Blighe ♦ 65k
4
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1
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1.1k
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1
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How to combine all three Ontology classes (BP, MF and CC) in a single analysis ?
topgo go written 22 months ago by User1029725 • 100
3
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1
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5 follow
1
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TOPGO- how to do GO enrichment using a custom go database?
R gene ontology topgo go enrichment rna-seq written 22 months ago by ahmad.iut • 80 • updated 22 months ago by ahmad mousavi • 480
6
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1
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1.2k
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5 follow
1
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issues regarding topGO usage
topgo written 2.2 years ago by prakashpandey1111 • 0 • updated 2.2 years ago by Kevin Blighe ♦ 65k
0
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0
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963
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topGO error with uniprot ID's
R topgo topgouniprot written 2.4 years ago by MH • 0 • updated 2.3 years ago by Biostar ♦♦ 20
0
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0
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617
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0
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GOTerm enrichment rna-seq data
log fold change topgo rna-seq goterm lfc written 2.4 years ago by studyfranco • 0 • updated 2.4 years ago by h.mon ♦ 31k
4
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1
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2.6k
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5 follow
1
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topGO is performing enrichment test on GO terms that are not present in my dataset
R bioconductor gene ontology topgo written 2.7 years ago by Fabio Marroni • 2.6k • updated 2.6 years ago by Pablo Markaide • 20
5
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4
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3.1k
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5 follow
4
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Problem with topGO: GO term enrichment analysis
R bioconductor topgo go error written 3.1 years ago by cristian • 240 • updated 2.7 years ago by adnbps • 10
4
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2
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3.2k
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2
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topGo Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq edger written 3.0 years ago by Ric • 300
3
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1
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1.1k
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1
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topGO allGenes argument
R topgo rna-seq edger written 3.0 years ago by Ric • 300 • updated 3.0 years ago by e.rempel • 890
1
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1.6k
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0
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data set geneList not found, problem in the topGO tutorial
functional genomics bioconductor topgo go all written 3.1 years ago by cristian • 240
2
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0
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2.4k
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0
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topGO: GO terms but no P-value score
R gene ontology topgo written 3.1 years ago by khhgng • 70
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