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<prev • 31 results • page 1 of 2 • next >
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Bias in GO enrichment analysis for non-model organsim?
interproscan gene ontology topgo go enrichment written 6 days ago by yh362 • 20 • updated 5 days ago by Philipp Bayer ♦ 6.3k
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3
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228
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3
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Visualisation of GO Terms
gene ontology topgo go written 12 weeks ago by miles.thorburn • 80
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2
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320
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2
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ReviGO down, any alternatives for GO enrichment condensing?
revigo simrel topgo go enrichment written 3 months ago by Biogeek • 350 • updated 3 months ago by Berghopper • 20
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6 follow
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GO analysis using topGO Arabidopsis
geneontology goenrichment topgo rna-seq written 2.2 years ago by Sreeraj Thamban • 140 • updated 3 months ago by Kevin Blighe ♦ 45k
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240
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Using the Correct Ensembl Organism Database in topGO in R
R bioconductor topgo ensembl written 4 months ago by miles.thorburn • 80 • updated 4 months ago by h.mon ♦ 26k
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Many redundant lines in a genes2GO mapping file, is it normal and will it influence my topGo enrichment ?
topgo rna-seq written 7 months ago by david.roux • 20 • updated 5 months ago by Biostar ♦♦ 20
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TopGO Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq written 7 months ago by jomagrax • 0
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GO analysis using topGO
gene R goenrichment topgo go written 8 months ago by mannoulag1 • 60 • updated 8 months ago by Kevin Blighe ♦ 45k
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How to combine all three Ontology classes (BP, MF and CC) in a single analysis ?
topgo go written 8 months ago by User1029725 • 100
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5 follow
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TOPGO- how to do GO enrichment using a custom go database?
R gene ontology topgo go enrichment rna-seq written 8 months ago by ahmad.iut • 70 • updated 8 months ago by ahmad mousavi • 450
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issues regarding topGO usage
topgo written 12 months ago by prakashpandey1111 • 0 • updated 12 months ago by Kevin Blighe ♦ 45k
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topGO error with uniprot ID's
R topgo topgouniprot written 15 months ago by MH • 0 • updated 14 months ago by Biostar ♦♦ 20
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GOTerm enrichment rna-seq data
log fold change topgo rna-seq goterm lfc written 15 months ago by studyfranco • 0 • updated 15 months ago by h.mon ♦ 26k
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5 follow
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topGO is performing enrichment test on GO terms that are not present in my dataset
R bioconductor gene ontology topgo written 18 months ago by Fabio Marroni • 2.3k • updated 17 months ago by Pablo Markaide • 20
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5 follow
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Problem with topGO: GO term enrichment analysis
R bioconductor topgo go error written 23 months ago by cristian • 220 • updated 18 months ago by adnbps • 0
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2
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topGo Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq edger written 22 months ago by Ric • 240
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1
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topGO allGenes argument
R topgo rna-seq edger written 22 months ago by Ric • 240 • updated 22 months ago by e.rempel • 770
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data set geneList not found, problem in the topGO tutorial
functional genomics bioconductor topgo go all written 23 months ago by cristian • 220
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topGO: GO terms but no P-value score
R gene ontology topgo written 23 months ago by khhgng • 60
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Retrieving Annotation data from runTest() created object
deseq2 topgo gene ontology rna-seq written 2.0 years ago by Sreeraj Thamban • 140
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How to rank genes prepared for GSEA analysis with TopGO
topgo gsea rna-seq written 2.1 years ago by wangdp123 • 160 • updated 2.1 years ago by YaGalbi • 1.4k
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Help! Gene Ontology Enrichment Analysis
goexpress R topgo microarray ontology written 2.1 years ago by ab123 • 40 • updated 2.1 years ago by Mehmet • 470
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3
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3
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Retrieving the gene list related to all GO ID
R gene ontology topgo rna-seq written 2.2 years ago by Sreeraj Thamban • 140 • updated 2.2 years ago by e.rempel • 770
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Using Plant GO Slim in topGO
plant go slim gene ontology topgo arabidopsis written 2.2 years ago by Sreeraj Thamban • 140
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Errors when extracting significant genes per GO.id from topgo data
R bioconductor topgo rna-seq written 2.4 years ago by tiago211287 • 1.1k
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Can't find GO annotation with topGO
R bioconductor topgo go gene-ontology written 2.6 years ago by bvernot • 0
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topgo rnaseq error
topgo rna-seq written 2.9 years ago by tarek.mohamed • 250 • updated 2.9 years ago by genomax ♦ 69k
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topgo for rnaseq ERROR
topgo rna-seq written 2.9 years ago by tarek.mohamed • 250 • updated 2.9 years ago by Devon Ryan ♦ 91k
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Open-source tools for GO enrichment in non-model organisms
enrichment topgo go R written 3.2 years ago by biotech • 540
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topGO use showSigOfNodes for non-topGO data? or: how to visualize GO graph from GOseq
R bioconductor topgo goseq rna-seq written 4.4 years ago by tospo • 40 • updated 4.1 years ago by pengchy • 410
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