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9
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8 follow
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plotting a dotplot with topGO output
dotplot topgo rna-seq go clusterprofiler written 3 months ago by rachid.boumlik • 40 • updated 27 days ago by Kevin Blighe ♦ 70k
0
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0
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121
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0
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topGo custom Annotation table
topgo enrichmentanalysis customannotation written 6 weeks ago by Aini • 0
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0
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99
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0
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TopGO- how to get enriched terms at a specific level?
topgo go enrichment rna-seq written 7 weeks ago by biosjm • 0
1
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0
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190
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0
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topGO enrichment: Should the "Gene universe" also contain genes with no GO term?
enrichment topgo rna-seq go written 10 weeks ago by YOUSEUFS • 20
0
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0
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130
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0
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TopGO results inconclusive
R topgo annotation go enrichment written 11 weeks ago by zebratown • 0
0
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1
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225
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1
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TopGO: how to select specific genes from the bacgkround for the analysis
R topgo rna-seq geneontology written 3 months ago by Oli • 0 • updated 12 weeks ago by e.rempel • 1000
0
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162
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Loading Data Into TopGO with p.values
chip-seq topgo written 3 months ago by gkunz • 10
0
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0
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150
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0
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TopGo- How to get "parents" on 2nd/3rd level hierarchy from enriched Go terms
enrichment topgo enrichment analysis written 3 months ago by biosjm • 0
0
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1
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204
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1
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Gene- Level Go Enrichment Analysis- with annotation on transcript-level
go enrichment analysis topgo rna-seq written 3 months ago by biosjm • 0 • updated 3 months ago by Jean-Karim Heriche ♦ 24k
2
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0
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397
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0
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TopGO gene enrichment analysis with predefined set of genes for non-model organism
R topgo rna-seq geneenrichment goterm written 5 months ago by Ambika • 40
3
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1
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425
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1
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topGO GO enrichment analysis for common DEGs from multiple pairwise comparisons
ensembl biomart topgo go enrichment written 6 months ago by anikng • 0 • updated 6 months ago by antonioggsousa • 2.0k
1
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1
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358
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1
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How do I extract the p-value from runTest() in the TopGO package?
R topgo statistics written 8 months ago by ktm • 0
0
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1
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522
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1
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gene-to-GO mappings with topGO gene set enrichment analysis
R topgo gsea gen to go mapping written 9 months ago by jose.wo • 0 • updated 9 months ago by Kevin Blighe ♦ 70k
0
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2
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427
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2
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Don't let TopGo to trimm long GO names
software error next-gen goenrichment topgo rna-seq written 9 months ago by Apex92 • 20
6
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2
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536
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5 follow
2
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Retrieving GO mappings for GOseq analysis with non-native organism
topgo gff gene ontology gaf goseq written 9 months ago by thomas.welch • 40
1
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0
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328
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0
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topGO analysis "MF" term error
R topgo rna-seq go written 9 months ago by sim.j.baum • 50
0
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1
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454
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1
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topGO geneSelectionFun error
genesel R topgo written 10 months ago by ig.yakunin • 0
0
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0
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690
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0
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Error when I load my own data using ViSEAGO create_topGO
R topgo viseago rna-seq ontology written 13 months ago by srs204 • 0
1
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1
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394
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1
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TopGO KS test,0 significant hit but rank ahead?
gene R topgo written 17 months ago by Liyo • 0 • updated 17 months ago by h.mon ♦ 32k
0
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0
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351
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0
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Understanding WeightFisher and padj output from topGO
topgo p value goterms weightfisher padj written 17 months ago by kehoe • 20
1
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3
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2.9k
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3
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Help! Gene Ontology Enrichment Analysis
goexpress R topgo microarray ontology written 3.8 years ago by ab123 • 50 • updated 18 months ago by EagleEye ♦ 6.8k
1
vote
1
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433
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1
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Bias in GO enrichment analysis for non-model organsim?
interproscan gene ontology topgo go enrichment written 19 months ago by yh362 • 30 • updated 19 months ago by Philipp Bayer ♦ 6.9k
2
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3
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1.4k
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3
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Visualisation of GO Terms
gene ontology topgo go written 22 months ago by miles.thorburn • 120
4
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2
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2.8k
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2
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ReviGO down, any alternatives for GO enrichment condensing?
revigo simrel topgo go enrichment written 22 months ago by Biogeek • 400 • updated 22 months ago by Berghopper • 20
12
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1
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4.7k
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7 follow
1
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GO analysis using topGO Arabidopsis
geneontology goenrichment topgo rna-seq written 3.8 years ago by Sreeraj Thamban • 220 • updated 23 months ago by Kevin Blighe ♦ 70k
2
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1
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1.3k
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1
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Using the Correct Ensembl Organism Database in topGO in R
R bioconductor topgo ensembl written 24 months ago by miles.thorburn • 120 • updated 24 months ago by h.mon ♦ 32k
0
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376
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0
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Many redundant lines in a genes2GO mapping file, is it normal and will it influence my topGo enrichment ?
topgo rna-seq written 2.2 years ago by david.roux • 40 • updated 2.1 years ago by Biostar ♦♦ 20
0
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TopGO Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq written 2.2 years ago by jomagrax • 30
9
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1
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8.5k
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5 follow
1
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GO analysis using topGO
gene R goenrichment topgo go written 2.3 years ago by mannoulag1 • 60 • updated 2.3 years ago by Kevin Blighe ♦ 70k
4
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1.4k
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How to combine all three Ontology classes (BP, MF and CC) in a single analysis ?
topgo go written 2.3 years ago by User1029725 • 100
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