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<prev • 409 results • page 1 of 14 • next >
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Prioritizing Fusion Based On Tophat Result
reads fusion tophat written 6.3 years ago by Angel • 210 • updated 5 weeks ago by Biostar ♦♦ 20
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How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
hisat tophat alignment star rna-seq written 9 weeks ago by CY • 420 • updated 5 weeks ago by Biostar ♦♦ 20
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178
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5 follow
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Tophat Usage difficulty?
bowtie2 tophat alignment mapping written 7 weeks ago by jaqx008 • 60
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Tophat Error: It Tries To Execute Lines In Fastq Files
tophat bowtie error written 6.3 years ago by newDNASeqer • 650 • updated 10 weeks ago by Biostar ♦♦ 20
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Bowtie 2 index files exist but return Error: Could not find Bowtie 2 index files (humanGRCh38.*.bt2l)
bowtie2 tophat rna-seq index written 4 months ago by skurkure • 0 • updated 11 weeks ago by Biostar ♦♦ 20
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Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
bowtie2 tophat tophat2 bowtie rna-seq written 3.0 years ago by ashMC • 10 • updated 12 weeks ago by Arnaud Ceol • 840
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Automatically feeding a good mate inner distance to TopHat2
tophat pe rna-seq written 3.8 years ago by umn_bist • 330 • updated 3 months ago by Biostar ♦♦ 20
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Tophat prep_read error
illumina tophat rna-seq written 3.9 years ago by Yuka Takemon • 20 • updated 3 months ago by RamRS ♦ 24k
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How to run tophat without gff file for bacterial genome
tophat gene expresssion rna-seq bacterial written 4.9 years ago by bassanio • 20 • updated 4 months ago by Biostar ♦♦ 20
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Tophat - Expectancy Of Properly Paired Reads?
tophat rna-seq written 7.1 years ago by Johan • 860 • updated 4 months ago by Biostar ♦♦ 20
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6 follow
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How do I run Tophat?
tophat bowtie written 4.6 years ago by from the mountains • 80 • updated 5 months ago by h.mon ♦ 28k
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205
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Total number of junctions in junctions.bed generated by TopHat
tophat rna-seq written 5 months ago by justinkablan225 • 10
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260
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6 follow
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Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 5 months ago by alexis.groppi • 30
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Bowtie / Tophat failing on unmapped reads
tophat alignment rna-seq bowtie written 5 months ago by spitzer • 0
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8 follow
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Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 6.6 years ago by siyu • 130 • updated 6 months ago by Biostar ♦♦ 20
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7 follow
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TopHat mapping error
tophat bowtie rna-seq written 7 months ago by gokberk • 60 • updated 7 months ago by genomax ♦ 74k
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5 follow
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 7 months ago by BM • 40 • updated 7 months ago by Juke-34 • 2.9k
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Tophat Error - What Does This Mean?
tophat error bowtie written 6.2 years ago by newDNASeqer • 650 • updated 7 months ago by Biostar ♦♦ 20
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806
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7 follow
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Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 8 months ago by am3 • 70
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why reads align to other coordinates?
bowtie2 tophat alignment rna-seq align written 10 months ago by star • 190
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can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 4.2 years ago by A • 3.6k • updated 10 months ago by Biostar ♦♦ 20
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574
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batch effect in RNAseq analysis using tophat cufflinks pipeline
tophat cufflink rna-seq batch effect written 10 months ago by yff • 0 • updated 10 months ago by kristoffer.vittingseerup • 2.6k
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5 follow
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What causes tophat_reports error?
tophat rna-seq written 5.5 years ago by Bharat Iyengar • 270 • updated 11 months ago by Biostar ♦♦ 20
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What is the reason for big difference in DEGs estimation compared to previous estimation?
tophat degs rna-seq written 11 months ago by anc.informatics • 0 • updated 11 months ago by jared.andrews07 • 4.0k
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384
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tophat running does not complete properly.
tophat alignment rna-seq bowtie written 12 months ago by yff • 0
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462
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Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 12 months ago by abdul.suboor123 • 0 • updated 12 months ago by WouterDeCoster ♦ 42k
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Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 14 months ago by sbb • 10 • updated 14 months ago by kristoffer.vittingseerup • 2.6k
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Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 14 months ago by NAVID.BAVI • 0 • updated 14 months ago by RamRS ♦ 24k
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1
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633
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1
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Problem mapping with STAR
tophat star hisat2 written 14 months ago by alvarocentron91 • 10 • updated 14 months ago by WouterDeCoster ♦ 42k
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7
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7 follow
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Write Failure In Tophat 1.3.1 X86_64
tophat splicing sequencing written 8.4 years ago by Gabrielw • 60 • updated 14 months ago by RamRS ♦ 24k
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