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<prev • 407 results • page 1 of 14 • next >
13
votes
1
answer
1.9k
views
1
answer
Automatically feeding a good mate inner distance to TopHat2
tophat pe rna-seq written 3.5 years ago by umn_bist • 330 • updated 10 days ago by Biostar ♦♦ 20
2
votes
1
answer
1.6k
views
1
answer
Tophat prep_read error
illumina tophat rna-seq written 3.7 years ago by Yuka Takemon • 20 • updated 22 days ago by RamRS ♦ 23k
0
votes
0
answers
109
views
0
answers
Bowtie 2 index files exist but return Error: Could not find Bowtie 2 index files (humanGRCh38.*.bt2l)
bowtie2 tophat rna-seq index written 6 weeks ago by skurkure • 0 • updated 6 weeks ago by genomax ♦ 70k
2
votes
1
answer
1.6k
views
1
answer
How to run tophat without gff file for bacterial genome
tophat gene expresssion rna-seq bacterial written 4.7 years ago by vinumanikandan • 0 • updated 7 weeks ago by Biostar ♦♦ 20
9
votes
2
answers
4.9k
views
2
answers
Tophat - Expectancy Of Properly Paired Reads?
tophat rna-seq written 6.9 years ago by Johan • 860 • updated 7 weeks ago by Biostar ♦♦ 20
10
votes
3
answers
12k
views
6 follow
3
answers
How do I run Tophat?
tophat bowtie written 4.4 years ago by from the mountains • 60 • updated 7 weeks ago by h.mon ♦ 26k
3
votes
0
answers
167
views
0
answers
Total number of junctions in junctions.bed generated by TopHat
tophat rna-seq written 8 weeks ago by justinkablan225 • 10
9
votes
2
answers
180
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 9 weeks ago by alexis.groppi • 30
1
vote
0
answers
122
views
0
answers
Bowtie / Tophat failing on unmapped reads
tophat alignment rna-seq bowtie written 10 weeks ago by spitzer • 0
2
votes
3
answers
7.9k
views
8 follow
3
answers
Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 6.3 years ago by siyu • 130 • updated 3 months ago by Biostar ♦♦ 20
11
votes
1
answer
316
views
7 follow
1
answer
TopHat mapping error
tophat bowtie rna-seq written 4 months ago by gokberk • 60 • updated 4 months ago by genomax ♦ 70k
0
votes
2
answers
236
views
5 follow
2
answers
Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 4 months ago by BM • 40 • updated 4 months ago by Juke-34 • 2.4k
0
votes
2
answers
2.6k
views
2
answers
Tophat Error - What Does This Mean?
tophat error bowtie written 6.0 years ago by newDNASeqer • 650 • updated 4 months ago by Biostar ♦♦ 20
19
votes
6
answers
623
views
7 follow
6
answers
Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 5 months ago by am3 • 70
10
votes
1
answer
339
views
1
answer
why reads align to other coordinates?
bowtie2 tophat alignment rna-seq align written 6 months ago by star • 190
2
votes
1
answer
1.1k
views
1
answer
can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 4.0 years ago by F • 3.4k • updated 7 months ago by Biostar ♦♦ 20
5
votes
2
answers
468
views
2
answers
batch effect in RNAseq analysis using tophat cufflinks pipeline
tophat cufflink rna-seq batch effect written 7 months ago by yff • 0 • updated 7 months ago by kristoffer.vittingseerup • 2.2k
3
votes
1
answer
2.7k
views
5 follow
1
answer
What causes tophat_reports error?
tophat rna-seq written 5.2 years ago by Bharat Iyengar • 270 • updated 7 months ago by Biostar ♦♦ 20
1
vote
1
answer
283
views
1
answer
What is the reason for big difference in DEGs estimation compared to previous estimation?
tophat degs rna-seq written 8 months ago by anc.informatics • 0 • updated 8 months ago by jared.andrews07 • 2.8k
1
vote
0
answers
314
views
0
answers
tophat running does not complete properly.
tophat alignment rna-seq bowtie written 8 months ago by yff • 0
4
votes
1
answer
383
views
1
answer
Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 9 months ago by abdul.suboor123 • 0 • updated 9 months ago by WouterDeCoster ♦ 40k
5
votes
1
answer
543
views
5 follow
1
answer
Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 10 months ago by sbb • 10 • updated 10 months ago by kristoffer.vittingseerup • 2.2k
7
votes
0
answers
618
views
0
answers
Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 11 months ago by NAVID.BAVI • 0 • updated 11 months ago by RamRS ♦ 23k
6
votes
1
answer
561
views
1
answer
Problem mapping with STAR
tophat star hisat2 written 11 months ago by alvarocentron91 • 10 • updated 11 months ago by WouterDeCoster ♦ 40k
4
votes
7
answers
5.4k
views
7 follow
7
answers
Write Failure In Tophat 1.3.1 X86_64
tophat splicing sequencing written 8.1 years ago by Gabrielw • 60 • updated 11 months ago by RamRS ♦ 23k
1
vote
2
answers
535
views
2
answers
Difference between two count table that created from same fastq files?
gtf tophat featurecounts rna-seq counttable written 11 months ago by cilgaiscan • 50 • updated 11 months ago by h.mon ♦ 26k
1
vote
0
answers
504
views
0
answers
TopHat Error: Couldn't build bowtie index with err = -11
tophat rna-seq bowtie written 12 months ago by Sun Jiji • 0
0
votes
1
answer
1.9k
views
1
answer
why i cant have sam, sorted bam or bed by tophat output?
tophat bam written 4.0 years ago by F • 3.4k • updated 12 months ago by WouterDeCoster ♦ 40k
4
votes
1
answer
454
views
1
answer
Different version of Tophat gives me different number of mapped reads
tophat alignment rna-seq written 12 months ago by BioDH • 0 • updated 12 months ago by swbarnes2 ♦ 6.1k
0
votes
0
answers
298
views
0
answers
Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 13 months ago by biogirl04 • 0 • updated 12 months ago by Biostar ♦♦ 20
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