Showing: tophatreset
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13
votes
1
answer
1.9k
views
1
answer
Automatically feeding a good mate inner distance to TopHat2
tophat pe rna-seq written 3.5 years ago by umn_bist330 • updated 10 days ago by Biostar ♦♦ 20
2
votes
1
answer
1.6k
views
1
answer
Tophat prep_read error
illumina tophat rna-seq written 3.7 years ago by Yuka Takemon20 • updated 22 days ago by RamRS23k
0
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0
answers
109
views
0
answers
2
votes
1
answer
1.6k
views
1
answer
How to run tophat without gff file for bacterial genome
tophat gene expresssion rna-seq bacterial written 4.7 years ago by vinumanikandan0 • updated 7 weeks ago by Biostar ♦♦ 20
9
votes
2
answers
4.9k
views
2
answers
Tophat - Expectancy Of Properly Paired Reads?
tophat rna-seq written 6.9 years ago by Johan860 • updated 7 weeks ago by Biostar ♦♦ 20
10
votes
3
answers
12k
views
6 follow
3
answers
How do I run Tophat?
tophat bowtie written 4.4 years ago by from the mountains60 • updated 7 weeks ago by h.mon26k
3
votes
0
answers
167
views
0
answers
9
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2
answers
180
views
6 follow
2
answers
1
vote
0
answers
122
views
0
answers
2
votes
3
answers
7.9k
views
8 follow
3
answers
Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 6.3 years ago by siyu130 • updated 3 months ago by Biostar ♦♦ 20
11
votes
1
answer
316
views
7 follow
1
answer
TopHat mapping error
tophat bowtie rna-seq written 4 months ago by gokberk60 • updated 4 months ago by genomax70k
0
votes
2
answers
236
views
5 follow
2
answers
Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 4 months ago by BM40 • updated 4 months ago by Juke-342.4k
0
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2
answers
2.6k
views
2
answers
Tophat Error - What Does This Mean?
tophat error bowtie written 6.0 years ago by newDNASeqer650 • updated 4 months ago by Biostar ♦♦ 20
19
votes
6
answers
623
views
7 follow
6
answers
10
votes
1
answer
339
views
1
answer
2
votes
1
answer
1.1k
views
1
answer
can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 4.0 years ago by F3.4k • updated 7 months ago by Biostar ♦♦ 20
5
votes
2
answers
468
views
2
answers
3
votes
1
answer
2.7k
views
5 follow
1
answer
What causes tophat_reports error?
tophat rna-seq written 5.2 years ago by Bharat Iyengar270 • updated 7 months ago by Biostar ♦♦ 20
1
vote
1
answer
283
views
1
answer
1
vote
0
answers
314
views
0
answers
4
votes
1
answer
383
views
1
answer
Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 9 months ago by abdul.suboor1230 • updated 9 months ago by WouterDeCoster40k
5
votes
1
answer
543
views
5 follow
1
answer
Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 10 months ago by sbb10 • updated 10 months ago by kristoffer.vittingseerup2.2k
7
votes
0
answers
618
views
0
answers
Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 11 months ago by NAVID.BAVI0 • updated 11 months ago by RamRS23k
6
votes
1
answer
561
views
1
answer
Problem mapping with STAR
tophat star hisat2 written 11 months ago by alvarocentron9110 • updated 11 months ago by WouterDeCoster40k
4
votes
7
answers
5.4k
views
7 follow
7
answers
Write Failure In Tophat 1.3.1 X86_64
tophat splicing sequencing written 8.1 years ago by Gabrielw60 • updated 11 months ago by RamRS23k
1
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2
answers
535
views
2
answers
1
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0
answers
504
views
0
answers
0
votes
1
answer
1.9k
views
1
answer
why i cant have sam, sorted bam or bed by tophat output?
tophat bam written 4.0 years ago by F3.4k • updated 12 months ago by WouterDeCoster40k
4
votes
1
answer
454
views
1
answer
Different version of Tophat gives me different number of mapped reads
tophat alignment rna-seq written 12 months ago by BioDH0 • updated 12 months ago by swbarnes26.1k
0
votes
0
answers
298
views
0
answers
Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 13 months ago by biogirl040 • updated 12 months ago by Biostar ♦♦ 20
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