Showing: tophatreset
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7
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118
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Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 5 days ago by NAVID.BAVI0 • updated 4 days ago by Ram17k
6
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1
answer
127
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1
answer
Problem mapping with STAR
tophat star hisat2 written 7 days ago by alvarocentron910 • updated 7 days ago by WouterDeCoster32k
4
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7
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views
7 follow
7
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Write Failure In Tophat 1.3.1 X86_64
tophat splicing sequencing written 7.2 years ago by Gabrielw60 • updated 14 days ago by Ram17k
1
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2
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204
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2
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1
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0
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141
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0
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0
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1
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1
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why i cant have sam, sorted bam or bed by tophat output?
tophat bam written 3.0 years ago by F3.1k • updated 5 weeks ago by WouterDeCoster32k
4
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1
answer
166
views
1
answer
Different version of Tophat gives me different number of mapped reads
tophat alignment rna-seq written 6 weeks ago by BioDH0 • updated 6 weeks ago by swbarnes24.0k
0
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135
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0
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Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 9 weeks ago by biogirl040 • updated 7 weeks ago by Biostar ♦♦ 20
2
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2.2k
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0
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tophat failed: Warning: junction database is empty!
tophat mapping written 3.6 years ago by biolab1.0k • updated 7 weeks ago by Biostar ♦♦ 20
1
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2
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3.2k
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5 follow
2
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How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
tophat written 5.3 years ago by huangqp198410 • updated 8 weeks ago by achamess30
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1
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167
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1
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extract one-side unmapped reads from sam
tophat bam samtools sam written 3 months ago by liorglic40 • updated 3 months ago by Carlo Yague4.2k
5
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1
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4.6k
views
6 follow
1
answer
0
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2
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645
views
2
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How to check if the mapping results from tophat2 are correct?
tophat mapping rna-seq written 2.1 years ago by mirza80 • updated 4 months ago by Biostar ♦♦ 20
0
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1
answer
178
views
1
answer
Tophat running error
tophat rna-seq written 4 months ago by mahnazkiani40 • updated 4 months ago by genomax55k
1
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1
answer
218
views
5 follow
1
answer
1
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0
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181
views
0
answers
0
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0
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392
views
0
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Reducing error bars on TopHat RNA expression analysis
R tophat rna-seq bowtie written 9 months ago by waterspring0 • updated 5 months ago by Biostar ♦♦ 20
8
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1
answer
304
views
1
answer
Tophat not installing with Biostar Handbook
tophat blast from the past: the tuxedo suite written 5 months ago by k.e.pendleton20 • updated 5 months ago by h.mon19k
3
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0
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333
views
0
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Tophat Error: Make in Mac OSX
tophat make rna-seq written 6 months ago by vharshavardhanan30 • updated 6 months ago by Ram17k
6
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2
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1.0k
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5 follow
2
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TopHat installation error
tophat written 16 months ago by salamandra170 • updated 8 months ago by Bilal20
0
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1
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649
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1
answer
RNA SEQ ERCC
ercc tophat rna-seq bowtie written 9 months ago by Payal30
3
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1
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569
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1
answer
2
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1
answer
1.3k
views
1
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TopHat Failed In 'Reporting output tracks' Stage
software error tophat tophat2 rna-seq written 21 months ago by ivan.molodtsov10 • updated 8 months ago by zuolin.bai0
5
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2
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2.4k
views
2
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Tophat2 shows error during running
python tophat rna-seq written 3.3 years ago by Whoknows650 • updated 9 months ago by Rahul Sharma560
2
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0
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625
views
0
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1
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0
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453
views
0
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Tophat Reporting output tracks, run out of memory, how to solve?
tophat rna-seq written 9 months ago by zoukai34120850 • updated 9 months ago by WouterDeCoster32k
4
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5
answers
4.8k
views
5
answers
Tophat error : Error: gtf_to_fasta returned an error.
tophat next-gen rna-seq written 3.7 years ago by nikhilvgbt0 • updated 10 months ago by Meiyue Wang0
9
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2
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801
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5 follow
2
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Alignment dropped with Salmon
tophat salmon rna-seq written 10 months ago by Sharon340
2
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0
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682
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0
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4
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1
answer
416
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1
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How can we validate RNAseq differential gene expressions?
cuffdiff tophat salmon rna-seq edger written 10 months ago by Sharon340 • updated 10 months ago by Devon Ryan84k
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