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<prev • 369 results • page 1 of 13 • next >
2
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0
answers
82
views
0
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RNA-Seq analysis cummerbund package in R?
software error R tophat cufflinks rna-seq written 3 hours ago by Snijesh • 0
3
votes
0
answers
161
views
0
answers
Low percentage of mapped reads in TopHat
tophat bowtie rna-seq written 1 day ago by Lucila • 10
3
votes
2
answers
122
views
2
answers
Tophat Error Message
tophat rna-seq written 9 days ago by jammydodger123456 • 0 • updated 9 days ago by andrew.j.skelton73 • 3.6k
4
votes
0
answers
176
views
0
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unmapped reads by Tophat can be aligned by Bowtie2
bowtie2 tophat chip-seq written 21 days ago by zhangzhenyusz • 20 • updated 21 days ago by Alex Reynolds ♦ 20k
2
votes
2
answers
712
views
2
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How to change the quality score of reads ? (quick help is appreciated)
tophat bam fastq rna-seq written 16 months ago by mbparsa • 10 • updated 8 weeks ago by madhu.9124 • 10
0
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1
answer
146
views
1
answer
How to set the blast database of TopHat-Fusion
tophat gene fusion database blast written 8 weeks ago by shiyang93 • 10 • updated 8 weeks ago by Istvan Albert ♦♦ 73k
15
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1
answer
289
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6 follow
1
answer
Alignment time of TopHat (v.2.1.1) increases while increasing threads (using multi-threading) instead of decreasing the alignment time why?
tophat multithreading rna-seq written 10 weeks ago by mbkmastkhel • 10 • updated 10 weeks ago by novice • 690
9
votes
1
answer
1.3k
views
1
answer
Searching For Deletion In A Low Number Of Reads
indel mitochondria tophat written 4.9 years ago by Assa Yeroslaviz • 1.1k • updated 3 months ago by Biostar ♦♦ 20
3
votes
1
answer
207
views
1
answer
TopHat installation error
tophat written 3 months ago by salamandra • 70 • updated 3 months ago by Devon Ryan ♦ 69k
0
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1
answer
1.0k
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1
answer
download NCBI Blast database for use with tophat
ncbi tophat database blast written 2.4 years ago by lien • 40 • updated 3 months ago by Biostar ♦♦ 20
3
votes
0
answers
170
views
0
answers
tophat output, accepted_hits is off
tophat rna-seq written 4 months ago by rebeccakurtz62 • 0
3
votes
1
answer
548
views
1
answer
Question about install Tophat and Cufflinks (Boost issue)
tophat cufflinks boost written 11 months ago by Joe • 30
1
vote
1
answer
238
views
1
answer
For only a few genes, Cuffdiff report more than one FPKM values per locus. Why?
cufflinks tophat degs cuffdiff rna-seq written 5 months ago by rice.researcher • 20 • updated 5 months ago by theobroma22 • 880
2
votes
2
answers
219
views
2
answers
Mapping to a single Chromosome Tophat
tophat galaxy rna-seq written 5 months ago by benjyrolls • 70 • updated 5 months ago by Devon Ryan ♦ 69k
0
votes
0
answers
190
views
0
answers
Different mapping rate for tophat+mm9 vs star+mm10
mm9 mm10 tophat star rna-seq written 5 months ago by Ice P • 0
4
votes
3
answers
7.5k
views
7 follow
3
answers
Bowtie & Tophat
tophat cufflinks bowtie written 4.3 years ago by k.nirmalraman • 880 • updated 5 months ago by mrmkanni93 • 0
2
votes
1
answer
300
views
1
answer
TopHat Report Transcript Alignment
tophat alignment transcriptome written 5 months ago by athey.johnc • 40 • updated 5 months ago by Carlo Yague • 3.1k
2
votes
1
answer
277
views
1
answer
TopHat vs Bowtie output differences
tophat rna-seq bowtie written 5 months ago by michael.dunne • 10 • updated 5 months ago by Nicolas Rosewick • 5.2k
6
votes
0
answers
324
views
5 follow
0
answers
rna seq bowtie couldn't find index files
tophat rna-seq bowtie written 7 months ago by prasanthgopinathangs • 20 • updated 6 months ago by Biostar ♦♦ 20
3
votes
0
answers
2.9k
views
5 follow
0
answers
Running Tophat --Fusion-Search On A Filtered Bam That Was Generated By Tophat
tophat rna-seq written 4.9 years ago by Malachi Griffith ♦ 15k • updated 6 months ago by Biostar ♦♦ 20
2
votes
3
answers
823
views
3
answers
Tophat prep_read error
illumina tophat rna-seq written 20 months ago by Yuka Takemon • 20 • updated 6 months ago by lprivatjogja1 • 0
3
votes
0
answers
294
views
0
answers
TopHat --max-multihits interpretation
tophat rna-seq written 6 months ago by Yuka Takemon • 20
0
votes
0
answers
294
views
0
answers
GTF to FASTA including stop codon
gtf fasta tophat gffread written 7 months ago by athey.johnc • 40
3
votes
0
answers
600
views
0
answers
Tophat and Bowtie installed with Conda not working on test data.
tophat miniconda anaconda conda bowtie written 7 months ago by ariel.balter • 110
1
vote
1
answer
396
views
1
answer
How does CIRCexplorer2 work with paired-end data?
tophat circrna rna-seq written 8 months ago by Iñigo Prada • 350 • updated 7 months ago by kepbod • 70
2
votes
2
answers
431
views
2
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tophat aligns to wrong strand
dutp tophat alignment rna-seq strand written 7 months ago by jlmakofske • 0 • updated 7 months ago by apa@stowers • 320
0
votes
0
answers
365
views
0
answers
error while running tophat ReadStream::getRead() called with out-of-order id#!
rnaseq tophat human written 7 months ago by kritika1424 • 70
1
vote
0
answers
280
views
0
answers
Custom genome and tophat
tophat rna-seq sequencing written 7 months ago by Michi • 870
2
votes
2
answers
2.0k
views
2
answers
tophat Preparing reads [FAILED]
tophat written 3.2 years ago by justinfanyi • 0 • updated 8 months ago by mike • 0
3
votes
1
answer
401
views
1
answer
Tophat vs Tophat-fusion concordant alignment rate
tophat tophat-fusion rna-seq written 9 months ago by Iñigo Prada • 350
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