Showing: tophatreset
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2
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2
answers
644
views
2
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How to change the quality score of reads ? (quick help is appreciated)
tophat bam fastq rna-seq written 14 months ago by mbparsa10 • updated 4 days ago by madhu.91240
0
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1
answer
99
views
1
answer
How to set the blast database of TopHat-Fusion
tophat gene fusion database blast written 4 days ago by shiyang9310 • updated 4 days ago by Istvan Albert ♦♦ 71k
15
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1
answer
203
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6 follow
1
answer
9
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1
answer
1.2k
views
1
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Searching For Deletion In A Low Number Of Reads
indel mitochondria tophat written 4.8 years ago by Assa Yeroslaviz1.1k • updated 6 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
149
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1
answer
TopHat installation error
tophat written 7 weeks ago by salamandra60 • updated 7 weeks ago by Devon Ryan68k
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1
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979
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1
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download NCBI Blast database for use with tophat
ncbi tophat database blast written 2.3 years ago by lien30 • updated 7 weeks ago by Biostar ♦♦ 20
3
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0
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134
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0
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2
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1
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480
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1
answer
1
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1
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194
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1
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2
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2
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172
views
2
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Mapping to a single Chromosome Tophat
tophat galaxy rna-seq written 3 months ago by benjyrolls70 • updated 3 months ago by Devon Ryan68k
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0
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152
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0
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4
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3
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7.2k
views
7 follow
3
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Bowtie & Tophat
tophat cufflinks bowtie written 4.2 years ago by k.nirmalraman860 • updated 3 months ago by mrmkanni930
2
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1
answer
242
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1
answer
TopHat Report Transcript Alignment
tophat alignment transcriptome written 3 months ago by athey.johnc40 • updated 3 months ago by Carlo Yague2.9k
2
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1
answer
211
views
1
answer
TopHat vs Bowtie output differences
tophat rna-seq bowtie written 4 months ago by michael.dunne10 • updated 4 months ago by Nicolas Rosewick5.0k
6
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0
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305
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5 follow
0
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rna seq bowtie couldn't find index files
tophat rna-seq bowtie written 6 months ago by prasanthgopinathangs20 • updated 4 months ago by Biostar ♦♦ 20
3
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0
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2.8k
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5 follow
0
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Running Tophat --Fusion-Search On A Filtered Bam That Was Generated By Tophat
tophat rna-seq written 4.8 years ago by Malachi Griffith15k • updated 4 months ago by Biostar ♦♦ 20
2
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3
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757
views
3
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Tophat prep_read error
illumina tophat rna-seq written 18 months ago by Yuka Takemon20 • updated 4 months ago by lprivatjogja10
3
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0
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246
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0
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0
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0
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241
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0
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3
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0
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485
views
0
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1
vote
1
answer
343
views
1
answer
How does CIRCexplorer2 work with paired-end data?
tophat circrna rna-seq written 6 months ago by Iñigo Prada300 • updated 5 months ago by kepbod70
2
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2
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368
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2
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tophat aligns to wrong strand
dutp tophat alignment rna-seq strand written 5 months ago by jlmakofske0 • updated 5 months ago by apa@stowers320
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0
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315
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0
answers
1
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0
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245
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0
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Custom genome and tophat
tophat rna-seq sequencing written 6 months ago by Michi870
2
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2
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2.0k
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2
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tophat Preparing reads [FAILED]
tophat written 3.1 years ago by justinfanyi0 • updated 6 months ago by mike0
3
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1
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331
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1
answer
2
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1
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465
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1
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TopHat Failed In 'Reporting output tracks' Stage
software error tophat tophat2 rna-seq written 6 months ago by ivan.molodtcov10 • updated 6 months ago by mastal5111.7k
0
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0
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305
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0
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Mismatches in cancer RNA-seq
tophat rna-seq cancer written 8 months ago by Iñigo Prada300 • updated 6 months ago by Biostar ♦♦ 20
4
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1
answer
297
views
1
answer
How to convert .bed file to .juncs file using Tophat?
tophat rna-seq written 6 months ago by heir_of_isildur8810 • updated 6 months ago by Macspider1.2k
10
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2
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466
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2
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tophat --max-multihits impacts 'mapped in a proper pair'
multireads tophat multihits paired-end rna-seq written 7 months ago by Carlo Yague2.9k • updated 7 months ago by John11k
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