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<prev • 365 results • page 1 of 13 • next >
2
votes
2
answers
644
views
2
answers
How to change the quality score of reads ? (quick help is appreciated)
tophat bam fastq rna-seq written 14 months ago by mbparsa • 10 • updated 4 days ago by madhu.9124 • 0
0
votes
1
answer
99
views
1
answer
How to set the blast database of TopHat-Fusion
tophat gene fusion database blast written 4 days ago by shiyang93 • 10 • updated 4 days ago by Istvan Albert ♦♦ 71k
15
votes
1
answer
203
views
6 follow
1
answer
Alignment time of TopHat (v.2.1.1) increases while increasing threads (using multi-threading) instead of decreasing the alignment time why?
tophat multithreading rna-seq written 19 days ago by mbkmastkhel • 10 • updated 19 days ago by novice • 660
9
votes
1
answer
1.2k
views
1
answer
Searching For Deletion In A Low Number Of Reads
indel mitochondria tophat written 4.8 years ago by Assa Yeroslaviz • 1.1k • updated 6 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
149
views
1
answer
TopHat installation error
tophat written 7 weeks ago by salamandra • 60 • updated 7 weeks ago by Devon Ryan ♦ 68k
0
votes
1
answer
979
views
1
answer
download NCBI Blast database for use with tophat
ncbi tophat database blast written 2.3 years ago by lien • 30 • updated 7 weeks ago by Biostar ♦♦ 20
3
votes
0
answers
134
views
0
answers
tophat output, accepted_hits is off
tophat rna-seq written 10 weeks ago by rebeccakurtz62 • 0
2
votes
1
answer
480
views
1
answer
Question about install Tophat and Cufflinks (Boost issue)
tophat cufflinks boost written 10 months ago by Joe • 20
1
vote
1
answer
194
views
1
answer
For only a few genes, Cuffdiff report more than one FPKM values per locus. Why?
cufflinks tophat degs cuffdiff rna-seq written 3 months ago by rice.researcher • 20 • updated 3 months ago by theobroma22 • 700
2
votes
2
answers
172
views
2
answers
Mapping to a single Chromosome Tophat
tophat galaxy rna-seq written 3 months ago by benjyrolls • 70 • updated 3 months ago by Devon Ryan ♦ 68k
0
votes
0
answers
152
views
0
answers
Different mapping rate for tophat+mm9 vs star+mm10
mm9 mm10 tophat star rna-seq written 3 months ago by Ice P • 0
4
votes
3
answers
7.2k
views
7 follow
3
answers
Bowtie & Tophat
tophat cufflinks bowtie written 4.2 years ago by k.nirmalraman • 860 • updated 3 months ago by mrmkanni93 • 0
2
votes
1
answer
242
views
1
answer
TopHat Report Transcript Alignment
tophat alignment transcriptome written 3 months ago by athey.johnc • 40 • updated 3 months ago by Carlo Yague • 2.9k
2
votes
1
answer
211
views
1
answer
TopHat vs Bowtie output differences
tophat rna-seq bowtie written 4 months ago by michael.dunne • 10 • updated 4 months ago by Nicolas Rosewick • 5.0k
6
votes
0
answers
305
views
5 follow
0
answers
rna seq bowtie couldn't find index files
tophat rna-seq bowtie written 6 months ago by prasanthgopinathangs • 20 • updated 4 months ago by Biostar ♦♦ 20
3
votes
0
answers
2.8k
views
5 follow
0
answers
Running Tophat --Fusion-Search On A Filtered Bam That Was Generated By Tophat
tophat rna-seq written 4.8 years ago by Malachi Griffith ♦ 15k • updated 4 months ago by Biostar ♦♦ 20
2
votes
3
answers
757
views
3
answers
Tophat prep_read error
illumina tophat rna-seq written 18 months ago by Yuka Takemon • 20 • updated 4 months ago by lprivatjogja1 • 0
3
votes
0
answers
246
views
0
answers
TopHat --max-multihits interpretation
tophat rna-seq written 5 months ago by Yuka Takemon • 20
0
votes
0
answers
241
views
0
answers
GTF to FASTA including stop codon
gtf fasta tophat gffread written 5 months ago by athey.johnc • 40
3
votes
0
answers
485
views
0
answers
Tophat and Bowtie installed with Conda not working on test data.
tophat miniconda anaconda conda bowtie written 5 months ago by ariel.balter • 100
1
vote
1
answer
343
views
1
answer
How does CIRCexplorer2 work with paired-end data?
tophat circrna rna-seq written 6 months ago by Iñigo Prada • 300 • updated 5 months ago by kepbod • 70
2
votes
2
answers
368
views
2
answers
tophat aligns to wrong strand
dutp tophat alignment rna-seq strand written 5 months ago by jlmakofske • 0 • updated 5 months ago by apa@stowers • 320
0
votes
0
answers
315
views
0
answers
error while running tophat ReadStream::getRead() called with out-of-order id#!
rnaseq tophat human written 5 months ago by kritika1424 • 70
1
vote
0
answers
245
views
0
answers
Custom genome and tophat
tophat rna-seq sequencing written 6 months ago by Michi • 870
2
votes
2
answers
2.0k
views
2
answers
tophat Preparing reads [FAILED]
tophat written 3.1 years ago by justinfanyi • 0 • updated 6 months ago by mike • 0
3
votes
1
answer
331
views
1
answer
Tophat vs Tophat-fusion concordant alignment rate
tophat tophat-fusion rna-seq written 8 months ago by Iñigo Prada • 300
2
votes
1
answer
465
views
1
answer
TopHat Failed In 'Reporting output tracks' Stage
software error tophat tophat2 rna-seq written 6 months ago by ivan.molodtcov • 10 • updated 6 months ago by mastal511 • 1.7k
0
votes
0
answers
305
views
0
answers
Mismatches in cancer RNA-seq
tophat rna-seq cancer written 8 months ago by Iñigo Prada • 300 • updated 6 months ago by Biostar ♦♦ 20
4
votes
1
answer
297
views
1
answer
How to convert .bed file to .juncs file using Tophat?
tophat rna-seq written 6 months ago by heir_of_isildur88 • 10 • updated 6 months ago by Macspider • 1.2k
10
votes
2
answers
466
views
2
answers
tophat --max-multihits impacts 'mapped in a proper pair'
multireads tophat multihits paired-end rna-seq written 7 months ago by Carlo Yague • 2.9k • updated 7 months ago by John ♦ 11k
<prev • 365 results • page 1 of 13 • next >
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