Showing: tophatreset
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2
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1
answer
980
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can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 3.4 years ago by F3.2k • updated 3 days ago by Biostar ♦♦ 20
5
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2
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159
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3
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1
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5 follow
1
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What causes tophat_reports error?
tophat rna-seq written 4.6 years ago by Bharat Iyengar260 • updated 23 days ago by Biostar ♦♦ 20
1
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1
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132
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1
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1
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0
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150
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0
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4
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1
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209
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1
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Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 10 weeks ago by abdul.suboor1230 • updated 10 weeks ago by WouterDeCoster35k
5
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1
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270
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5 follow
1
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Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 3 months ago by sbbinfo10 • updated 3 months ago by kristoffer.vittingseerup1.2k
7
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0
answers
274
views
0
answers
Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 4 months ago by NAVID.BAVI0 • updated 4 months ago by RamRS20k
6
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1
answer
313
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1
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Problem mapping with STAR
tophat star hisat2 written 4 months ago by alvarocentron910 • updated 4 months ago by WouterDeCoster35k
4
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7
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5.2k
views
7 follow
7
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Write Failure In Tophat 1.3.1 X86_64
tophat splicing sequencing written 7.5 years ago by Gabrielw60 • updated 4 months ago by RamRS20k
1
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2
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345
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2
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1
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0
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274
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0
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0
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1
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1.6k
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1
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why i cant have sam, sorted bam or bed by tophat output?
tophat bam written 3.4 years ago by F3.2k • updated 5 months ago by WouterDeCoster35k
4
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1
answer
286
views
1
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Different version of Tophat gives me different number of mapped reads
tophat alignment rna-seq written 5 months ago by BioDH0 • updated 5 months ago by swbarnes24.7k
0
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0
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185
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0
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Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 6 months ago by biogirl040 • updated 5 months ago by Biostar ♦♦ 20
2
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0
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2.4k
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0
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tophat failed: Warning: junction database is empty!
tophat mapping written 3.9 years ago by biolab1.1k • updated 5 months ago by Biostar ♦♦ 20
1
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2
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3.4k
views
5 follow
2
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How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
tophat written 5.6 years ago by huangqp198410 • updated 5 months ago by achamess40
0
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1
answer
241
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1
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extract one-side unmapped reads from sam
tophat bam samtools sam written 7 months ago by liorglic40 • updated 7 months ago by Carlo Yague4.4k
5
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1
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5.0k
views
6 follow
1
answer
0
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2
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716
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2
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How to check if the mapping results from tophat2 are correct?
tophat mapping rna-seq written 2.4 years ago by mirza80 • updated 8 months ago by Biostar ♦♦ 20
0
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1
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288
views
1
answer
Tophat running error
tophat rna-seq written 8 months ago by mahnazkiani40 • updated 8 months ago by genomax60k
1
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1
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339
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5 follow
1
answer
1
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0
answers
251
views
0
answers
0
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0
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473
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Reducing error bars on TopHat RNA expression analysis
R tophat rna-seq bowtie written 13 months ago by waterspring0 • updated 9 months ago by Biostar ♦♦ 20
8
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1
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453
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1
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Tophat not installing with Biostar Handbook
tophat blast from the past: the tuxedo suite written 9 months ago by k.e.pendleton20 • updated 9 months ago by h.mon22k
3
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0
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466
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0
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Tophat Error: Make in Mac OSX
tophat make rna-seq written 9 months ago by vharshavardhanan30 • updated 9 months ago by RamRS20k
7
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2
answers
1.3k
views
5 follow
2
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TopHat installation error
tophat written 20 months ago by salamandra180 • updated 12 months ago by Bilal30
0
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1
answer
844
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1
answer
RNA SEQ ERCC
ercc tophat rna-seq bowtie written 12 months ago by Payal30
3
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1
answer
793
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1
answer
2
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1
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1.5k
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1
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TopHat Failed In 'Reporting output tracks' Stage
software error tophat tophat2 rna-seq written 2.1 years ago by ivan.molodtsov10 • updated 12 months ago by zuolin.bai0
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