Showing: tophatreset
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4
votes
1
answer
119
views
1
answer
Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 6 days ago by abdul.suboor1230 • updated 6 days ago by WouterDeCoster33k
5
votes
1
answer
198
views
5 follow
1
answer
Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 6 weeks ago by sbbinfo0 • updated 6 weeks ago by kristoffer.vittingseerup700
7
votes
0
answers
194
views
0
answers
Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 8 weeks ago by NAVID.BAVI0 • updated 8 weeks ago by RamRS19k
6
votes
1
answer
238
views
1
answer
Problem mapping with STAR
tophat star hisat2 written 8 weeks ago by alvarocentron910 • updated 8 weeks ago by WouterDeCoster33k
4
votes
7
answers
5.1k
views
7 follow
7
answers
Write Failure In Tophat 1.3.1 X86_64
tophat splicing sequencing written 7.4 years ago by Gabrielw60 • updated 9 weeks ago by RamRS19k
1
vote
2
answers
283
views
2
answers
1
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0
answers
202
views
0
answers
0
votes
1
answer
1.6k
views
1
answer
why i cant have sam, sorted bam or bed by tophat output?
tophat bam written 3.2 years ago by F3.1k • updated 3 months ago by WouterDeCoster33k
4
votes
1
answer
232
views
1
answer
Different version of Tophat gives me different number of mapped reads
tophat alignment rna-seq written 3 months ago by BioDH0 • updated 3 months ago by swbarnes24.5k
0
votes
0
answers
157
views
0
answers
Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 3 months ago by biogirl040 • updated 3 months ago by Biostar ♦♦ 20
2
votes
0
answers
2.3k
views
0
answers
tophat failed: Warning: junction database is empty!
tophat mapping written 3.7 years ago by biolab1.0k • updated 3 months ago by Biostar ♦♦ 20
1
vote
2
answers
3.3k
views
5 follow
2
answers
How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
tophat written 5.4 years ago by huangqp198410 • updated 3 months ago by achamess30
0
votes
1
answer
194
views
1
answer
extract one-side unmapped reads from sam
tophat bam samtools sam written 5 months ago by liorglic40 • updated 5 months ago by Carlo Yague4.3k
5
votes
1
answer
4.8k
views
6 follow
1
answer
0
votes
2
answers
678
views
2
answers
How to check if the mapping results from tophat2 are correct?
tophat mapping rna-seq written 2.3 years ago by mirza80 • updated 6 months ago by Biostar ♦♦ 20
0
votes
1
answer
236
views
1
answer
Tophat running error
tophat rna-seq written 6 months ago by mahnazkiani40 • updated 6 months ago by genomax58k
1
vote
1
answer
276
views
5 follow
1
answer
1
vote
0
answers
216
views
0
answers
0
votes
0
answers
434
views
0
answers
Reducing error bars on TopHat RNA expression analysis
R tophat rna-seq bowtie written 11 months ago by waterspring0 • updated 7 months ago by Biostar ♦♦ 20
8
votes
1
answer
389
views
1
answer
Tophat not installing with Biostar Handbook
tophat blast from the past: the tuxedo suite written 7 months ago by k.e.pendleton20 • updated 7 months ago by h.mon21k
3
votes
0
answers
410
views
0
answers
Tophat Error: Make in Mac OSX
tophat make rna-seq written 7 months ago by vharshavardhanan30 • updated 7 months ago by RamRS19k
6
votes
2
answers
1.2k
views
5 follow
2
answers
TopHat installation error
tophat written 18 months ago by salamandra170 • updated 10 months ago by Bilal20
0
votes
1
answer
749
views
1
answer
RNA SEQ ERCC
ercc tophat rna-seq bowtie written 10 months ago by Payal30
3
votes
1
answer
669
views
1
answer
2
votes
1
answer
1.4k
views
1
answer
TopHat Failed In 'Reporting output tracks' Stage
software error tophat tophat2 rna-seq written 23 months ago by ivan.molodtsov10 • updated 10 months ago by zuolin.bai0
5
votes
2
answers
2.5k
views
2
answers
Tophat2 shows error during running
python tophat rna-seq written 3.5 years ago by Whoknows660 • updated 11 months ago by Rahul Sharma560
2
votes
0
answers
754
views
0
answers
1
vote
0
answers
527
views
0
answers
Tophat Reporting output tracks, run out of memory, how to solve?
tophat rna-seq written 11 months ago by zoukai34120850 • updated 11 months ago by WouterDeCoster33k
4
votes
5
answers
5.0k
views
5
answers
Tophat error : Error: gtf_to_fasta returned an error.
tophat next-gen rna-seq written 3.8 years ago by nikhilvgbt0 • updated 11 months ago by Meiyue Wang0
9
votes
2
answers
947
views
5 follow
2
answers
Alignment dropped with Salmon
tophat salmon rna-seq written 12 months ago by Sharon340
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