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<prev • 388 results • page 1 of 13 • next >
0
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1
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103
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1
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extract one-side unmapped reads from sam
tophat bam samtools sam written 12 days ago by liorglic • 40 • updated 12 days ago by Carlo Yague • 4.0k
5
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1
answer
4.4k
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6 follow
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tophat, the parameter "Expected inner distance between mate pairs"?
tophat expected inner distance between mate pairs written 3.4 years ago by lin.pei26 • 50 • updated 20 days ago by Biostar ♦♦ 20
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2
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582
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2
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How to check if the mapping results from tophat2 are correct?
tophat mapping rna-seq written 22 months ago by mirza • 80 • updated 5 weeks ago by Biostar ♦♦ 20
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1
answer
100
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1
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Tophat running error
tophat rna-seq written 6 weeks ago by mahnazkiani • 40 • updated 6 weeks ago by genomax ♦ 49k
1
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1
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141
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5 follow
1
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comparing mapping statistics on s. pombe alignment (Star vs. tophat)
tophat alignment rna-seq pombe star written 9 weeks ago by dho322 • 0 • updated 9 weeks ago by Michael Dondrup ♦ 44k
1
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0
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129
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The problem about tophat software -G parameter
tophat alignment rna-seq written 10 weeks ago by linay0102 • 0
0
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0
answers
320
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0
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Reducing error bars on TopHat RNA expression analysis
R tophat rna-seq bowtie written 6 months ago by waterspring • 0 • updated 12 weeks ago by Biostar ♦♦ 20
8
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1
answer
215
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1
answer
Tophat not installing with Biostar Handbook
tophat blast from the past: the tuxedo suite written 12 weeks ago by k.e.pendleton • 20 • updated 12 weeks ago by h.mon ♦ 15k
3
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0
answers
211
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0
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Tophat Error: Make in Mac OSX
tophat make rna-seq written 3 months ago by vharshavardhanan • 30 • updated 3 months ago by Ram ♦ 15k
6
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2
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768
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5 follow
2
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TopHat installation error
tophat written 13 months ago by salamandra • 130 • updated 5 months ago by Bilal • 20
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1
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485
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1
answer
RNA SEQ ERCC
ercc tophat rna-seq bowtie written 6 months ago by Payal • 30
3
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1
answer
407
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1
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Why different rna-seq aligners need to be used for Ion Torrent data compared with illumina?
tophat bbmap mira rna-seq hisat2 written 5 months ago by Bioinfo • 200 • updated 5 months ago by h.mon ♦ 15k
2
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1
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1.1k
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1
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TopHat Failed In 'Reporting output tracks' Stage
software error tophat tophat2 rna-seq written 18 months ago by ivan.molodtsov • 10 • updated 5 months ago by zuolin.bai • 0
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2
answers
2.3k
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2
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Tophat2 shows error during running
python tophat rna-seq written 3.1 years ago by Whoknows • 640 • updated 6 months ago by Rahul Sharma • 540
2
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0
answers
461
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0
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TOPHAT error in mapping left_kept_reads step during a mapping with fusion search with bowtie1
fusion tophat bowtie written 6 months ago by Gabriel Wajnberg • 50
1
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0
answers
364
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0
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Tophat Reporting output tracks, run out of memory, how to solve?
tophat rna-seq written 6 months ago by zoukai3412085 • 0 • updated 6 months ago by WouterDeCoster ♦ 29k
4
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5
answers
4.4k
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5
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Tophat error : Error: gtf_to_fasta returned an error.
tophat next-gen rna-seq written 3.4 years ago by nikhilvgbt • 0 • updated 7 months ago by Meiyue Wang • 0
9
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2
answers
601
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5 follow
2
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Alignment dropped with Salmon
tophat salmon rna-seq written 7 months ago by Sharon • 320
2
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0
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546
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0
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Getting Error with bowtie2! "Error: Couldn't build bowtie index with err = 1"
tophat alignment rna-seq bowtie sequencing written 7 months ago by baunruh • 0 • updated 7 months ago by genomax ♦ 49k
4
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1
answer
334
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1
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How can we validate RNAseq differential gene expressions?
cuffdiff tophat salmon rna-seq edger written 7 months ago by Sharon • 320 • updated 7 months ago by Devon Ryan ♦ 81k
6
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2
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495
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2
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RNA-seq read alignment
tophat hisat2 written 7 months ago by amy16 • 20
6
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0
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508
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7 follow
0
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Low mapped percentage. How to know if data is junk?
tophat rna-seq written 7 months ago by chahatupretiiitk • 50
2
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1
answer
344
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1
answer
tophat equal length problem
tophat equal length fastqc written 8 months ago by HK • 20 • updated 8 months ago by Nicolas Rosewick • 6.3k
3
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1
answer
1.2k
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1
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Dealing with multimapping reads in featureCounts
tophat featurecounts rna-seq written 9 months ago by Sreeraj Thamban • 90 • updated 9 months ago by bruce.moran • 410
4
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2
answers
367
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2
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Why reads not match to the genome? too many wrong bases to the genome
tophat rna-seq igv written 9 months ago by maple964 • 0
2
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2
answers
653
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2
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How to generate FPKM value for each replicates?
ngs cufflinks cuffdiff tophat rna-seq written 9 months ago by Snijesh VP • 190 • updated 9 months ago by Sparrow_kop • 180
6
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3
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2.0k
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3
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Error: segment-based junction search failed with err =-5
bowtie2 tophat rna-seq written 2.1 years ago by ihabyounis • 20 • updated 10 months ago by Isaac C. Joseph • 40
5
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0
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624
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0
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Low percentage of mapped reads in TopHat
tophat bowtie rna-seq written 10 months ago by Lucila • 10
3
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2
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468
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2
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Tophat Error Message
tophat rna-seq written 10 months ago by jammydodger123456 • 10 • updated 10 months ago by andrew.j.skelton73 ♦ 5.0k
4
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0
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497
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0
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unmapped reads by Tophat can be aligned by Bowtie2
bowtie2 tophat chip-seq written 11 months ago by zhangzhenyusz • 20 • updated 11 months ago by Alex Reynolds ♦ 24k
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