Showing: tophatreset
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11
votes
1
answer
208
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7 follow
1
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TopHat mapping error
tophat bowtie rna-seq written 14 days ago by gokberk0 • updated 13 days ago by genomax65k
0
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2
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125
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5 follow
2
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 16 days ago by BM40 • updated 16 days ago by Juke-342.1k
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2
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2.5k
views
2
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Tophat Error - What Does This Mean?
tophat error bowtie written 5.7 years ago by newDNASeqer630 • updated 18 days ago by Biostar ♦♦ 20
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6
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416
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7 follow
6
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10
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1
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236
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1
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2
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1.1k
views
1
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can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 3.6 years ago by F3.4k • updated 3 months ago by Biostar ♦♦ 20
5
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317
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2
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3
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1
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2.6k
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5 follow
1
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What causes tophat_reports error?
tophat rna-seq written 4.9 years ago by Bharat Iyengar260 • updated 3 months ago by Biostar ♦♦ 20
1
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1
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214
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1
answer
1
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0
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225
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0
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4
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1
answer
308
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1
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Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 5 months ago by abdul.suboor1230 • updated 5 months ago by WouterDeCoster38k
5
votes
1
answer
414
views
5 follow
1
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Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 6 months ago by sbb10 • updated 6 months ago by kristoffer.vittingseerup1.7k
7
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0
answers
437
views
0
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Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 7 months ago by NAVID.BAVI0 • updated 7 months ago by RamRS21k
6
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1
answer
448
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1
answer
Problem mapping with STAR
tophat star hisat2 written 7 months ago by alvarocentron9110 • updated 7 months ago by WouterDeCoster38k
4
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7
answers
5.3k
views
7 follow
7
answers
Write Failure In Tophat 1.3.1 X86_64
tophat splicing sequencing written 7.8 years ago by Gabrielw60 • updated 7 months ago by RamRS21k
1
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2
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443
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2
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1
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0
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381
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0
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0
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1
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1.8k
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1
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why i cant have sam, sorted bam or bed by tophat output?
tophat bam written 3.6 years ago by F3.4k • updated 8 months ago by WouterDeCoster38k
4
votes
1
answer
368
views
1
answer
Different version of Tophat gives me different number of mapped reads
tophat alignment rna-seq written 8 months ago by BioDH0 • updated 8 months ago by swbarnes25.2k
0
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0
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234
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0
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Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 9 months ago by biogirl040 • updated 8 months ago by Biostar ♦♦ 20
2
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0
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2.5k
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0
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tophat failed: Warning: junction database is empty!
tophat mapping written 4.1 years ago by biolab1.1k • updated 8 months ago by Biostar ♦♦ 20
1
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2
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3.5k
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5 follow
2
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How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
tophat written 5.9 years ago by huangqp198410 • updated 9 months ago by achamess40
0
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1
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358
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1
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extract one-side unmapped reads from sam
tophat bam samtools sam written 10 months ago by liorglic50 • updated 10 months ago by Carlo Yague4.4k
5
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1
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5.2k
views
6 follow
1
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0
votes
2
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766
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2
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How to check if the mapping results from tophat2 are correct?
tophat mapping rna-seq written 2.7 years ago by mirza80 • updated 11 months ago by Biostar ♦♦ 20
0
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1
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386
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1
answer
Tophat running error
tophat rna-seq written 11 months ago by mahnazkiani40 • updated 11 months ago by genomax65k
1
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1
answer
410
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5 follow
1
answer
1
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0
answers
325
views
0
answers
0
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0
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542
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0
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Reducing error bars on TopHat RNA expression analysis
R tophat rna-seq bowtie written 16 months ago by waterspring0 • updated 12 months ago by Biostar ♦♦ 20
8
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566
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1
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Tophat not installing with Biostar Handbook
tophat blast from the past: the tuxedo suite written 12 months ago by k.e.pendleton20 • updated 12 months ago by h.mon24k
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