Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: tophat • reset
or   Classic search
<prev • 371 results • page 1 of 13 • next >
2
votes
1
answer
103
views
1
answer
Dealing with multimapping reads in featureCounts
tophat featurecounts rna-seq written 3 days ago by Sreeraj Thamban • 30 • updated 3 days ago by bruce.moran • 280
4
votes
2
answers
171
views
2
answers
Why reads not match to the genome? too many wrong bases to the genome
tophat rna-seq igv written 18 days ago by maple964 • 0
2
votes
2
answers
201
views
2
answers
How to generate FPKM value for each replicates?
ngs cufflinks cuffdiff tophat rna-seq written 24 days ago by Phoenix • 100 • updated 24 days ago by Sparrow_kop • 90
6
votes
3
answers
1.3k
views
3
answers
Error: segment-based junction search failed with err =-5
bowtie2 tophat rna-seq written 16 months ago by ihabyounis • 20 • updated 4 weeks ago by Isaac C. Joseph • 30
5
votes
0
answers
282
views
0
answers
Low percentage of mapped reads in TopHat
tophat bowtie rna-seq written 5 weeks ago by Lucila • 10
3
votes
2
answers
174
views
2
answers
Tophat Error Message
tophat rna-seq written 6 weeks ago by jammydodger123456 • 0 • updated 6 weeks ago by andrew.j.skelton73 • 3.7k
4
votes
0
answers
215
views
0
answers
unmapped reads by Tophat can be aligned by Bowtie2
bowtie2 tophat chip-seq written 8 weeks ago by zhangzhenyusz • 20 • updated 8 weeks ago by Alex Reynolds ♦ 20k
2
votes
2
answers
745
views
2
answers
How to change the quality score of reads ? (quick help is appreciated)
tophat bam fastq rna-seq written 17 months ago by mbparsa • 10 • updated 3 months ago by madhu.9124 • 10
0
votes
1
answer
180
views
1
answer
How to set the blast database of TopHat-Fusion
tophat gene fusion database blast written 3 months ago by shiyang93 • 10 • updated 3 months ago by Istvan Albert ♦♦ 73k
15
votes
1
answer
347
views
6 follow
1
answer
Alignment time of TopHat (v.2.1.1) increases while increasing threads (using multi-threading) instead of decreasing the alignment time why?
tophat multithreading rna-seq written 3 months ago by mbkmastkhel • 10 • updated 3 months ago by novice • 690
9
votes
1
answer
1.3k
views
1
answer
Searching For Deletion In A Low Number Of Reads
indel mitochondria tophat written 5.0 years ago by Assa Yeroslaviz • 1.1k • updated 4 months ago by Biostar ♦♦ 20
3
votes
1
answer
250
views
1
answer
TopHat installation error
tophat written 4 months ago by salamandra • 70 • updated 4 months ago by Devon Ryan ♦ 70k
0
votes
1
answer
1.1k
views
1
answer
download NCBI Blast database for use with tophat
ncbi tophat database blast written 2.5 years ago by lien • 40 • updated 4 months ago by Biostar ♦♦ 20
3
votes
0
answers
195
views
0
answers
tophat output, accepted_hits is off
tophat rna-seq written 5 months ago by rebeccakurtz62 • 0
3
votes
1
answer
623
views
1
answer
Question about install Tophat and Cufflinks (Boost issue)
tophat cufflinks boost written 13 months ago by Joe • 30
1
vote
1
answer
275
views
1
answer
For only a few genes, Cuffdiff report more than one FPKM values per locus. Why?
cufflinks tophat degs cuffdiff rna-seq written 6 months ago by rice.researcher • 60 • updated 6 months ago by theobroma22 • 930
2
votes
2
answers
251
views
2
answers
Mapping to a single Chromosome Tophat
tophat galaxy rna-seq written 6 months ago by benjyrolls • 70 • updated 6 months ago by Devon Ryan ♦ 70k
0
votes
0
answers
216
views
0
answers
Different mapping rate for tophat+mm9 vs star+mm10
mm9 mm10 tophat star rna-seq written 6 months ago by Ice P • 0
4
votes
3
answers
7.7k
views
7 follow
3
answers
Bowtie & Tophat
tophat cufflinks bowtie written 4.4 years ago by k.nirmalraman • 890 • updated 6 months ago by mrmkanni93 • 0
2
votes
1
answer
347
views
1
answer
TopHat Report Transcript Alignment
tophat alignment transcriptome written 6 months ago by athey.johnc • 40 • updated 6 months ago by Carlo Yague • 3.2k
2
votes
1
answer
327
views
1
answer
TopHat vs Bowtie output differences
tophat rna-seq bowtie written 7 months ago by michael.dunne • 10 • updated 7 months ago by Nicolas Rosewick • 5.3k
6
votes
0
answers
352
views
5 follow
0
answers
rna seq bowtie couldn't find index files
tophat rna-seq bowtie written 9 months ago by prasanthgopinathangs • 20 • updated 7 months ago by Biostar ♦♦ 20
3
votes
0
answers
3.0k
views
5 follow
0
answers
Running Tophat --Fusion-Search On A Filtered Bam That Was Generated By Tophat
tophat rna-seq written 5.0 years ago by Malachi Griffith ♦ 15k • updated 7 months ago by Biostar ♦♦ 20
2
votes
3
answers
876
views
3
answers
Tophat prep_read error
illumina tophat rna-seq written 21 months ago by Yuka Takemon • 20 • updated 7 months ago by lprivatjogja1 • 0
3
votes
0
answers
328
views
0
answers
TopHat --max-multihits interpretation
tophat rna-seq written 8 months ago by Yuka Takemon • 20
0
votes
0
answers
329
views
0
answers
GTF to FASTA including stop codon
gtf fasta tophat gffread written 8 months ago by athey.johnc • 40
3
votes
0
answers
683
views
0
answers
Tophat and Bowtie installed with Conda not working on test data.
tophat miniconda anaconda conda bowtie written 8 months ago by ariel.balter • 110
1
vote
1
answer
445
views
1
answer
How does CIRCexplorer2 work with paired-end data?
tophat circrna rna-seq written 9 months ago by Iñigo Prada • 350 • updated 8 months ago by kepbod • 70
2
votes
2
answers
469
views
2
answers
tophat aligns to wrong strand
dutp tophat alignment rna-seq strand written 8 months ago by jlmakofske • 0 • updated 8 months ago by apa@stowers • 320
0
votes
0
answers
430
views
0
answers
error while running tophat ReadStream::getRead() called with out-of-order id#!
rnaseq tophat human written 8 months ago by kritika1424 • 70
<prev • 371 results • page 1 of 13 • next >
Recent Votes
Recent Locations • All »
  • Hong Kong, 2 minutes ago
  • Stockholm, 4 minutes ago
  • New York, 5 minutes ago
  • United Kingdom, 10 minutes ago
  • Newcastle Upon Tyne, 11 minutes ago
  • Bergen, Norway, 12 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 603 users visited in the last hour