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<prev • 411 results • page 1 of 14 • next >
3
votes
4
answers
9.8k
views
7 follow
4
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Cuffdiff Says Sam Isn'T Sorted, Although It Handled It Cufflinks
gene tophat cufflinks bowtie transcription written 8.2 years ago by Rubellus • 10 • updated 9 days ago by 1152389206 • 0
0
votes
0
answers
87
views
0
answers
Trouble running tophat ERROR 105 Unable to locate a modulefile for tophat/2.0.14
tophat rna-seq written 24 days ago by maithex • 0
3
votes
1
answer
5.2k
views
1
answer
[Errno 8] Exec Format Error Using Tophat 1.3.1
tophat written 9.0 years ago by Marina Manrique • 1.3k • updated 12 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
122
views
0
answers
GTF to match transcriptome data in TopHat
gtf tophat transcriptome written 4 months ago by blur • 120
0
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0
answers
1.4k
views
0
answers
Prioritizing Fusion Based On Tophat Result
reads fusion tophat written 6.9 years ago by Angel • 210 • updated 8 months ago by Biostar ♦♦ 20
1
vote
0
answers
297
views
0
answers
How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
hisat tophat alignment star rna-seq written 9 months ago by CY • 480 • updated 8 months ago by Biostar ♦♦ 20
3
votes
2
answers
306
views
5 follow
2
answers
Tophat Usage difficulty?
bowtie2 tophat alignment mapping written 9 months ago by jaqx008 • 70
0
votes
0
answers
2.9k
views
0
answers
Tophat Error: It Tries To Execute Lines In Fastq Files
tophat bowtie error written 6.9 years ago by newDNASeqer • 680 • updated 9 months ago by Biostar ♦♦ 20
0
votes
0
answers
517
views
0
answers
Bowtie 2 index files exist but return Error: Could not find Bowtie 2 index files (humanGRCh38.*.bt2l)
bowtie2 tophat rna-seq index written 12 months ago by skurkure • 0 • updated 10 months ago by Biostar ♦♦ 20
4
votes
2
answers
9.4k
views
2
answers
Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
bowtie2 tophat tophat2 bowtie rna-seq written 3.7 years ago by ashMC • 10 • updated 10 months ago by Arnaud Ceol • 850
13
votes
1
answer
2.1k
views
1
answer
Automatically feeding a good mate inner distance to TopHat2
tophat pe rna-seq written 4.4 years ago by umn_bist • 370 • updated 11 months ago by Biostar ♦♦ 20
2
votes
1
answer
1.9k
views
1
answer
Tophat prep_read error
illumina tophat rna-seq written 4.5 years ago by Yuka Takemon • 40 • updated 11 months ago by RamRS ♦ 27k
2
votes
1
answer
1.9k
views
1
answer
How to run tophat without gff file for bacterial genome
tophat gene expresssion rna-seq bacterial written 5.5 years ago by bassanio • 20 • updated 12 months ago by Biostar ♦♦ 20
9
votes
2
answers
5.2k
views
2
answers
Tophat - Expectancy Of Properly Paired Reads?
tophat rna-seq written 7.8 years ago by Johan • 870 • updated 12 months ago by Biostar ♦♦ 20
10
votes
3
answers
13k
views
6 follow
3
answers
How do I run Tophat?
tophat bowtie written 5.2 years ago by from the mountains • 90 • updated 12 months ago by h.mon ♦ 30k
3
votes
0
answers
281
views
0
answers
Total number of junctions in junctions.bed generated by TopHat
tophat rna-seq written 12 months ago by justinkablan225 • 10
9
votes
2
answers
442
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 12 months ago by alexis.groppi • 30
1
vote
0
answers
285
views
0
answers
Bowtie / Tophat failing on unmapped reads
tophat alignment rna-seq bowtie written 13 months ago by spitzer • 0
2
votes
3
answers
8.4k
views
8 follow
3
answers
Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 7.2 years ago by siyu • 130 • updated 14 months ago by Biostar ♦♦ 20
11
votes
1
answer
551
views
7 follow
1
answer
TopHat mapping error
tophat bowtie rna-seq written 15 months ago by gokberk • 60 • updated 15 months ago by genomax ♦ 85k
0
votes
2
answers
485
views
5 follow
2
answers
Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 15 months ago by BM • 60 • updated 15 months ago by Juke34 • 4.4k
0
votes
2
answers
2.9k
views
2
answers
Tophat Error - What Does This Mean?
tophat error bowtie written 6.9 years ago by newDNASeqer • 680 • updated 15 months ago by Biostar ♦♦ 20
19
votes
6
answers
1.2k
views
7 follow
6
answers
Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 16 months ago by am3 • 70
10
votes
1
answer
619
views
1
answer
why reads align to other coordinates?
bowtie2 tophat alignment rna-seq align written 17 months ago by star • 240
2
votes
1
answer
1.3k
views
1
answer
can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 4.8 years ago by A • 3.8k • updated 17 months ago by Biostar ♦♦ 20
5
votes
2
answers
876
views
2
answers
batch effect in RNAseq analysis using tophat cufflinks pipeline
tophat cufflink rna-seq batch effect written 18 months ago by yff • 0 • updated 18 months ago by kristoffer.vittingseerup • 3.3k
3
votes
1
answer
3.0k
views
5 follow
1
answer
What causes tophat_reports error?
tophat rna-seq written 6.1 years ago by Bharat Iyengar • 280 • updated 18 months ago by Biostar ♦♦ 20
1
vote
1
answer
432
views
1
answer
What is the reason for big difference in DEGs estimation compared to previous estimation?
tophat degs rna-seq written 19 months ago by anc.informatics • 0 • updated 19 months ago by jared.andrews07 ♦ 6.1k
1
vote
0
answers
580
views
0
answers
tophat running does not complete properly.
tophat alignment rna-seq bowtie written 19 months ago by yff • 0
4
votes
1
answer
608
views
1
answer
Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 20 months ago by abdul.suboor123 • 0 • updated 20 months ago by WouterDeCoster ♦ 44k
<prev • 411 results • page 1 of 14 • next >
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