Showing: tophatreset
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19
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345
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7 follow
6
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10
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1
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214
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2
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1.0k
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1
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can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 3.5 years ago by F3.4k • updated 9 weeks ago by Biostar ♦♦ 20
5
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2
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260
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2
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3
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1
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2.6k
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5 follow
1
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What causes tophat_reports error?
tophat rna-seq written 4.8 years ago by Bharat Iyengar260 • updated 12 weeks ago by Biostar ♦♦ 20
1
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1
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189
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1
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1
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0
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196
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0
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4
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1
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274
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1
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Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 4 months ago by abdul.suboor1230 • updated 4 months ago by WouterDeCoster37k
5
votes
1
answer
366
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5 follow
1
answer
Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 5 months ago by sbb10 • updated 5 months ago by kristoffer.vittingseerup1.6k
7
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0
answers
379
views
0
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Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 6 months ago by NAVID.BAVI0 • updated 6 months ago by RamRS20k
6
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1
answer
403
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1
answer
Problem mapping with STAR
tophat star hisat2 written 6 months ago by alvarocentron910 • updated 6 months ago by WouterDeCoster37k
4
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7
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5.3k
views
7 follow
7
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Write Failure In Tophat 1.3.1 X86_64
tophat splicing sequencing written 7.7 years ago by Gabrielw60 • updated 6 months ago by RamRS20k
1
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2
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412
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2
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1
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0
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338
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0
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0
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1
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1.7k
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1
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why i cant have sam, sorted bam or bed by tophat output?
tophat bam written 3.5 years ago by F3.4k • updated 7 months ago by WouterDeCoster37k
4
votes
1
answer
339
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1
answer
Different version of Tophat gives me different number of mapped reads
tophat alignment rna-seq written 7 months ago by BioDH0 • updated 7 months ago by swbarnes24.9k
0
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0
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219
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0
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Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 8 months ago by biogirl040 • updated 7 months ago by Biostar ♦♦ 20
2
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0
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2.4k
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0
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tophat failed: Warning: junction database is empty!
tophat mapping written 4.0 years ago by biolab1.1k • updated 7 months ago by Biostar ♦♦ 20
1
vote
2
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3.5k
views
5 follow
2
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How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
tophat written 5.8 years ago by huangqp198410 • updated 7 months ago by achamess40
0
votes
1
answer
315
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1
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extract one-side unmapped reads from sam
tophat bam samtools sam written 9 months ago by liorglic50 • updated 9 months ago by Carlo Yague4.4k
5
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1
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5.1k
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6 follow
1
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0
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2
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748
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2
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How to check if the mapping results from tophat2 are correct?
tophat mapping rna-seq written 2.6 years ago by mirza80 • updated 10 months ago by Biostar ♦♦ 20
0
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1
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346
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1
answer
Tophat running error
tophat rna-seq written 10 months ago by mahnazkiani40 • updated 10 months ago by genomax63k
1
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1
answer
392
views
5 follow
1
answer
1
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0
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296
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0
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0
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0
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511
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0
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Reducing error bars on TopHat RNA expression analysis
R tophat rna-seq bowtie written 15 months ago by waterspring0 • updated 11 months ago by Biostar ♦♦ 20
8
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1
answer
526
views
1
answer
Tophat not installing with Biostar Handbook
tophat blast from the past: the tuxedo suite written 11 months ago by k.e.pendleton20 • updated 11 months ago by h.mon24k
3
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0
answers
539
views
0
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Tophat Error: Make in Mac OSX
tophat make rna-seq written 12 months ago by vharshavardhanan30 • updated 12 months ago by RamRS20k
7
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2
answers
1.5k
views
5 follow
2
answers
TopHat installation error
tophat written 22 months ago by salamandra180 • updated 14 months ago by Bilal30
0
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1
answer
934
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1
answer
RNA SEQ ERCC
ercc tophat rna-seq bowtie written 15 months ago by Payal30
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