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<prev • 414 results • page 1 of 14 • next >
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TopHat Error: Couldn't build bowtie index with err = -11
tophat rna-seq bowtie written 2.4 years ago by Sun Jiji • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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1
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163
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1
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Tophat alignment and -g parameter
tophat rna-seq written 4 months ago by Sam • 120
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1
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362
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1
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Usefulness of paired-end sequencing (noob question)
paired-end tophat rna-seq written 4 months ago by Sam • 120
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1
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1.9k
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1
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GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in GFF?
gtf tophat gff rna-seq written 5.6 years ago by manekineko • 140 • updated 5 months ago by Biostar ♦♦ 20
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177
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tophat-fusion-post: IndexError: list index out of range
software error tophat written 6 months ago by Emily072020 • 10
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4
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10k
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7 follow
4
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Cuffdiff Says Sam Isn'T Sorted, Although It Handled It Cufflinks
gene tophat cufflinks bowtie transcription written 8.8 years ago by Rubellus • 10 • updated 6 months ago by 1152389206 • 0
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224
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Trouble running tophat ERROR 105 Unable to locate a modulefile for tophat/2.0.14
tophat rna-seq written 7 months ago by maithex • 0
3
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1
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5.4k
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1
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[Errno 8] Exec Format Error Using Tophat 1.3.1
tophat written 9.5 years ago by Marina Manrique • 1.3k • updated 9 months ago by Biostar ♦♦ 20
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188
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GTF to match transcriptome data in TopHat
gtf tophat transcriptome written 11 months ago by blur • 150
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1.5k
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0
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Prioritizing Fusion Based On Tophat Result
reads fusion tophat written 7.5 years ago by Angel • 210 • updated 15 months ago by Biostar ♦♦ 20
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0
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386
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0
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How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
hisat tophat alignment star rna-seq written 16 months ago by CY • 550 • updated 15 months ago by Biostar ♦♦ 20
3
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2
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410
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5 follow
2
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Tophat Usage difficulty?
bowtie2 tophat alignment mapping written 15 months ago by jaqx008 • 70
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3.0k
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Tophat Error: It Tries To Execute Lines In Fastq Files
tophat bowtie error written 7.5 years ago by newDNASeqer • 710 • updated 16 months ago by Biostar ♦♦ 20
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771
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0
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Bowtie 2 index files exist but return Error: Could not find Bowtie 2 index files (humanGRCh38.*.bt2l)
bowtie2 tophat rna-seq index written 18 months ago by skurkure • 0 • updated 16 months ago by Biostar ♦♦ 20
4
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2
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11k
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2
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Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
bowtie2 tophat tophat2 bowtie rna-seq written 4.2 years ago by ashMC • 10 • updated 16 months ago by Arnaud Ceol • 850
13
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1
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2.2k
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1
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Automatically feeding a good mate inner distance to TopHat2
tophat pe rna-seq written 5.0 years ago by umn_bist • 380 • updated 17 months ago by Biostar ♦♦ 20
2
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1
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1.9k
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1
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Tophat prep_read error
illumina tophat rna-seq written 5.1 years ago by Yuka Takemon • 40 • updated 17 months ago by _r_am ♦ 32k
2
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1
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2.0k
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1
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How to run tophat without gff file for bacterial genome
tophat gene expresssion rna-seq bacterial written 6.1 years ago by bassanio • 20 • updated 18 months ago by Biostar ♦♦ 20
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2
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5.5k
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2
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Tophat - Expectancy Of Properly Paired Reads?
tophat rna-seq written 8.3 years ago by Johan • 870 • updated 19 months ago by Biostar ♦♦ 20
10
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3
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14k
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6 follow
3
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How do I run Tophat?
tophat bowtie written 5.8 years ago by from the mountains • 110 • updated 19 months ago by h.mon ♦ 32k
3
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0
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341
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0
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Total number of junctions in junctions.bed generated by TopHat
tophat rna-seq written 19 months ago by justinkablan225 • 10
9
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2
answers
592
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6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 19 months ago by alexis.groppi • 30
1
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383
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Bowtie / Tophat failing on unmapped reads
tophat alignment rna-seq bowtie written 19 months ago by spitzer • 0
2
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3
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8.7k
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8 follow
3
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Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 7.7 years ago by siyu • 140 • updated 21 months ago by Biostar ♦♦ 20
11
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1
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668
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7 follow
1
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TopHat mapping error
tophat bowtie rna-seq written 21 months ago by gokberk • 60 • updated 21 months ago by GenoMax ♦ 94k
0
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2
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650
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5 follow
2
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 21 months ago by BM • 70 • updated 21 months ago by Juke34 • 4.9k
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2
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Tophat Error - What Does This Mean?
tophat error bowtie written 7.4 years ago by newDNASeqer • 710 • updated 21 months ago by Biostar ♦♦ 20
19
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6
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1.6k
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7 follow
6
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Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 23 months ago by am3 • 70
10
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1
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741
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1
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why reads align to other coordinates?
bowtie2 tophat alignment rna-seq align written 24 months ago by star • 270
2
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1
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1.4k
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1
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can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 5.4 years ago by A • 3.9k • updated 2.0 years ago by Biostar ♦♦ 20
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