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<prev • 410 results • page 1 of 14 • next >
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GTF to match transcriptome data in TopHat
gtf tophat transcriptome written 16 days ago by blur • 110
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0
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1.3k
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Prioritizing Fusion Based On Tophat Result
reads fusion tophat written 6.6 years ago by Angel • 210 • updated 4 months ago by Biostar ♦♦ 20
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0
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240
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How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
hisat tophat alignment star rna-seq written 5 months ago by CY • 460 • updated 4 months ago by Biostar ♦♦ 20
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2
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248
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5 follow
2
answers
Tophat Usage difficulty?
bowtie2 tophat alignment mapping written 4 months ago by jaqx008 • 70
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2.8k
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Tophat Error: It Tries To Execute Lines In Fastq Files
tophat bowtie error written 6.6 years ago by newDNASeqer • 670 • updated 5 months ago by Biostar ♦♦ 20
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297
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Bowtie 2 index files exist but return Error: Could not find Bowtie 2 index files (humanGRCh38.*.bt2l)
bowtie2 tophat rna-seq index written 7 months ago by skurkure • 0 • updated 5 months ago by Biostar ♦♦ 20
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8.5k
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2
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Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
bowtie2 tophat tophat2 bowtie rna-seq written 3.3 years ago by ashMC • 10 • updated 5 months ago by Arnaud Ceol • 850
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1
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2.0k
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1
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Automatically feeding a good mate inner distance to TopHat2
tophat pe rna-seq written 4.1 years ago by umn_bist • 370 • updated 6 months ago by Biostar ♦♦ 20
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1
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1.8k
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1
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Tophat prep_read error
illumina tophat rna-seq written 4.2 years ago by Yuka Takemon • 20 • updated 6 months ago by RamRS ♦ 25k
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1
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1.8k
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1
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How to run tophat without gff file for bacterial genome
tophat gene expresssion rna-seq bacterial written 5.2 years ago by bassanio • 20 • updated 7 months ago by Biostar ♦♦ 20
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2
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5.1k
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2
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Tophat - Expectancy Of Properly Paired Reads?
tophat rna-seq written 7.4 years ago by Johan • 860 • updated 8 months ago by Biostar ♦♦ 20
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3
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12k
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6 follow
3
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How do I run Tophat?
tophat bowtie written 4.9 years ago by from the mountains • 80 • updated 8 months ago by h.mon ♦ 29k
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243
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Total number of junctions in junctions.bed generated by TopHat
tophat rna-seq written 8 months ago by justinkablan225 • 10
9
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2
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332
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6 follow
2
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Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 8 months ago by alexis.groppi • 30
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233
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0
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Bowtie / Tophat failing on unmapped reads
tophat alignment rna-seq bowtie written 8 months ago by spitzer • 0
2
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3
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8.2k
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8 follow
3
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Tophat Rna-Seq Mapping Quality
tophat mapping rna-seq quality written 6.8 years ago by siyu • 130 • updated 10 months ago by Biostar ♦♦ 20
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1
answer
468
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7 follow
1
answer
TopHat mapping error
tophat bowtie rna-seq written 10 months ago by gokberk • 60 • updated 10 months ago by genomax ♦ 78k
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2
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385
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5 follow
2
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Directional Strand related settings for RNA-seq Analysis Software
htseq tophat rna-seq smartseq hisat2 written 10 months ago by BM • 40 • updated 10 months ago by Juke-34 • 3.3k
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2
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2.8k
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Tophat Error - What Does This Mean?
tophat error bowtie written 6.5 years ago by newDNASeqer • 670 • updated 10 months ago by Biostar ♦♦ 20
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6
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925
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7 follow
6
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Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 12 months ago by am3 • 70
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1
answer
510
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1
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why reads align to other coordinates?
bowtie2 tophat alignment rna-seq align written 13 months ago by star • 210
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1
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1.3k
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1
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can i use tophat for ribo-seq data sets
ribo-seq tophat alignment written 4.5 years ago by A • 3.7k • updated 13 months ago by Biostar ♦♦ 20
5
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2
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710
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2
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batch effect in RNAseq analysis using tophat cufflinks pipeline
tophat cufflink rna-seq batch effect written 13 months ago by yff • 0 • updated 13 months ago by kristoffer.vittingseerup • 3.0k
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1
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2.9k
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5 follow
1
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What causes tophat_reports error?
tophat rna-seq written 5.7 years ago by Bharat Iyengar • 270 • updated 14 months ago by Biostar ♦♦ 20
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1
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386
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1
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What is the reason for big difference in DEGs estimation compared to previous estimation?
tophat degs rna-seq written 14 months ago by anc.informatics • 0 • updated 14 months ago by jared.andrews07 ♦ 5.0k
1
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483
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tophat running does not complete properly.
tophat alignment rna-seq bowtie written 15 months ago by yff • 0
4
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1
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538
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1
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Please tell me what's wrong with my tophat script?
bowtie2 tophat bowtie1 written 15 months ago by abdul.suboor123 • 0 • updated 15 months ago by WouterDeCoster ♦ 43k
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1
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1.3k
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5 follow
1
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Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
tophat cufflinks cuffdiff star written 17 months ago by sbb • 10 • updated 17 months ago by kristoffer.vittingseerup • 3.0k
7
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0
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777
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0
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Transcriptome analysis using tophat and bowtie
software error bowtieindex tophat bowtie written 17 months ago by NAVID.BAVI • 0 • updated 17 months ago by RamRS ♦ 25k
6
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1
answer
692
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1
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Problem mapping with STAR
tophat star hisat2 written 17 months ago by alvarocentron91 • 10 • updated 17 months ago by WouterDeCoster ♦ 43k
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