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Basic question about SWISSPROT
swissprot rna-seq transcriptome written 3 days ago by luzglongoria • 20
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140
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 12 weeks ago by uk_plant_parasite_genome • 0 • updated 24 days ago by Biostar ♦♦ 20
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How calculate CG content for each contig in an transcript assembly?
cg content assembly contig rna-seq transcriptome written 4 weeks ago by luzglongoria • 20 • updated 28 days ago by biokoala ♦ 3.6k
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152
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Trimming sequences based on NCBI contamination screen report
ncbi assembly transcriptome written 28 days ago by T_18 • 20
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169
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Assembling ESTs and illumina reads
ests illumina de-novo transcriptome written 29 days ago by Joseph Hughes • 2.7k
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176
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Comparing Multiple Species RNA seq data
transcriptome evolution rna-seq comparative written 4 weeks ago by Lmira zand • 0 • updated 4 weeks ago by johnsonnathant • 70
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153
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Meta_analysis of different platforms of microarray data
meta analysis microarray R transcriptome written 4 weeks ago by j_jamal96 • 0 • updated 4 weeks ago by Kevin Blighe ♦ 37k
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101
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Mapping with GMAP: which output option shall I use?
genome assembly transcriptome written 4 weeks ago by luzglongoria • 20
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118
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Transcript assembly with nanopore long reads
assembly long reads transcriptome written 4 weeks ago by caggtaagtat • 400 • updated 4 weeks ago by colindaven • 1.0k
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127
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Pre-filtering transcriptome data by gene type
rna-seq non-coding rna transcriptome written 4 weeks ago by rrbutleriii • 50
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140
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How to map RNA-seq with hisat2, stringtie, an assembly fasta, a gtf file, and a transcript fasta?
stringtie hisat2 mapping transcriptome written 5 weeks ago by O.rka • 70 • updated 5 weeks ago by swbarnes2 ♦ 4.8k
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140
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How to prepare input data for DiffCoEx
wgcna transcriptome R written 10 weeks ago by Reza • 0
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What web software can do gap filling, error correction, elongation, consolidation and qual improvment of the transcriptomes?
post-assembly data processing transcriptome written 12 weeks ago by uk_plant_parasite_genome • 0
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Problem with plot_bootstrap function in sleuth
R sleuth rna-seq transcriptome written 3 months ago by lalvarez • 10
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161
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Working backwards - How do I retrieve transcripts from a primer list using sequence and amplicon length?
alignment primer blast transcriptome written 3 months ago by dacotahm • 10 • updated 3 months ago by h.mon ♦ 23k
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153
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references for fold-change cutoff
cutoff transcriptome fold-change written 3 months ago by CrazyB • 200 • updated 3 months ago by Fabio Marroni • 2.0k
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Where to find a valid GTF file for stringtie asssembly?
gtf stringtie transcriptome written 3 months ago by biokoala ♦ 3.6k • updated 3 months ago by Damian Kao ♦ 15k
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Are Clariom D arrays simply renamed HTA-3.0 arrays?
arrays transcriptome written 4 months ago by AliStairR • 0 • updated 4 months ago by Charles Warden ♦ 6.1k
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250
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What is the fate of low coverage region during Trinity assembly of transcriptome data?
trinity transcriptome assembly written 4 months ago by MAPK • 1.3k
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220
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error while Kissplice run
kissplice snp transcriptome written 4 months ago by KG • 10
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680
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Average number of contigs per scaffold
assembly next-gen rna-seq alignment transcriptome written 3.0 years ago by Rahul • 30 • updated 4 months ago by RamRS ♦ 20k
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273
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Genome annotation using transcriptome data
genome annotation transcriptome written 5 months ago by KG • 10
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de novo transcriptome assembly of Oxford Nanopore Technologies long reads
assembly transcriptome rna-seq denovo ont written 6 months ago by Alicia • 10
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Using rna-seq, why map reads to the genome but calculate gene expression by aligning to the transcriptome?
genome rna-seq transcriptome written 3.6 years ago by jgbradley1 • 90 • updated 6 months ago by Tom K • 0
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Where I can download a reference genome of a pine tree transcriptome?
plant reference conifer transcriptome written 6 months ago by conifer_genomics_uk • 0 • updated 6 months ago by genomax ♦ 62k
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252
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How to approach QTL for transcriptomic data?
qtl snp transcriptome written 6 months ago by niccolo.fran • 0 • updated 6 months ago by EagleEye ♦ 6.2k
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342
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TransDecoder: Filtering *_longest_orfs.pep Results
next-gen transdecoder cdna sequence transcriptome written 7 months ago by mduhon8 • 0 • updated 7 months ago by h.mon ♦ 23k
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1
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256
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sortmerna showing problem of nucleotide length
ion proton s5 rna-seq transcriptome written 7 months ago by ppnana • 0 • updated 7 months ago by Nitin Narwade • 380
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Problems in identifying heterozygous transcripts using de novo transcriptome assembly via Trinity (galaxy)
assembly rna-seq transcriptome written 9 months ago by aih5 • 0 • updated 7 months ago by Biostar ♦♦ 20
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Transcriptomics and gKaKs pipeline
gkaks next-gen rna-seq transcriptome written 9 months ago by mah123 • 0 • updated 8 months ago by Biostar ♦♦ 20
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