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<prev • 232 results • page 1 of 8 • next >
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TransDecoder: Filtering *_longest_orfs.pep Results
next-gen transdecoder cdna sequence transcriptome written 8 days ago by mduhon8 • 0 • updated 5 days ago by h.mon ♦ 16k
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1
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100
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1
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sortmerna showing problem of nucleotide length
ion proton s5 rna-seq transcriptome written 21 days ago by ppnana • 0 • updated 21 days ago by nitinnarwade1504 • 170
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107
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Problems in identifying heterozygous transcripts using de novo transcriptome assembly via Trinity (galaxy)
assembly rna-seq transcriptome written 9 weeks ago by aih5 • 0 • updated 27 days ago by Biostar ♦♦ 20
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129
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Transcriptomics and gKaKs pipeline
gkaks next-gen rna-seq transcriptome written 3 months ago by mac123 • 0 • updated 4 weeks ago by Biostar ♦♦ 20
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109
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What is "Possible polymerase run-on fragment"?
transcriptome written 5 weeks ago by I0110 • 100
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648
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using gmap to find tss and tes in genome file.
gmap genome alignment transcriptome written 18 months ago by a.rex • 110 • updated 6 weeks ago by Biostar ♦♦ 20
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137
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CDS prediction for newly assembled transcripts
assembly transcriptome rna-seq cds written 7 weeks ago by I0110 • 100
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11 follow
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Human Gene Regulatory Database
database transcriptome written 5.4 years ago by pavishivakumar • 90 • updated 9 weeks ago by c.chakraborty • 70
4
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1
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154
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1
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Generate transcriptome fasta for RNA-seq analysis with Salmon
rna-seq transcriptome written 10 weeks ago by guillaume.rbt • 450
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190
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Given a list of RefSeq homo sapiens mRNA transcripts, what is the simplest way to get the corresponding sequences from some other related species?
alignment orthology transcriptome written 3 months ago by Joel Wallenius • 10
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89
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A question about modular pipeline for transcriptome
pipeline transcriptome written 3 months ago by leboralli • 0
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1
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206
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1
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Blast2GO tolerant susceptible stress
plant stress blast2go rna-seq transcriptome written 4 months ago by susana.ramirez.par • 0 • updated 4 months ago by sgoetz123 • 10
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1
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220
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5 follow
1
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Strategy for genome annotation for a new individual of a well-established species
assembly annotation transcriptome written 4 months ago by liorglic • 40 • updated 4 months ago by Rohit • 1.3k
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5
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588
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5 follow
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How to improve existing transcriptome annotation using cufflink protocol ?
assembly cufflink cuffmerge transcriptome written 13 months ago by Chirag Parsania • 930 • updated 4 months ago by colindaven • 740
1
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1
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410
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1
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How to get --transcript-to-gene-map <file> in RSEM?
index reference rsem rna-seq transcriptome written 5 months ago by sciencer • 60
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6 follow
1
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Advice : Building Transcript Models Using Cufflinks
cufflinks rna-seq transcriptome written 6.2 years ago by Abhi • 1.5k • updated 5 months ago by Biostar ♦♦ 20
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300
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Unable to locate package tcc:i386
annotation annocript transcriptome rna-seq linux written 6 months ago by arsilan324 • 60
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246
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Unable to perform tbl2asn for submission of transcriptome to Genbank
ncbi annotation tbl2asn submission transcriptome written 6 months ago by arsilan324 • 60
1
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1
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671
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1
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Cutoff for TPM value
tpm transcriptome written 9 months ago by Picasa • 350 • updated 7 months ago by Macspider • 2.4k
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1
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472
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5 follow
1
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Calculate RNAseq coverage of a transcript
rna-seq transcriptome written 7 months ago by andrey.v.shubin • 50
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6 follow
2
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[RNAseq] Do anyone have already-built Hisat2 indexes files for human genome (GRCh37 ) ?
hisat2 indexes files rna-seq transcriptome written 13 months ago by atonidas • 0 • updated 7 months ago by ag1805x • 90
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368
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Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 8 months ago by pablo61991 • 40 • updated 8 months ago by genomax ♦ 52k
2
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444
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Tools for finding tissue specific gene expression "markers"?
transcriptome gene expression markers written 8 months ago by arvchi • 20
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2
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659
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2
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What may be causing super high duplication results in BUSCO?
assembly busco rna-seq transcriptome written 9 months ago by guillermo.ponz.segrelles • 0 • updated 9 months ago by gilbert.bionet • 120
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643
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Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 9 months ago by Picasa • 350
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250
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Whole-transcriptome RNASeq data of RNA-i engineered organism
transgene rnai sequencing rna-seq transcriptome written 9 months ago by Macspider • 2.4k
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319
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Does it make sense to limit insert size when mapping on transcriptome?
rnaseq insert size mapping transcriptome written 10 months ago by Macspider • 2.4k
3
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1
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535
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1
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SAM Flags for illumina paired-end reads mapped on transcriptome
paired-end alignment sam flags transcriptome written 10 months ago by Macspider • 2.4k • updated 10 months ago by Devon Ryan ♦ 81k
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3
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2.0k
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3
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Human transcriptome reference for RNASeq analysis
rna-seq human transcriptome written 2.7 years ago by Biomonika (Noolean) ♦ 3.0k • updated 10 months ago by KVC_bioinfo • 310
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Aligning RNA seq data to genome or transcriptome
genome ngs rna-seq transcriptome written 10 months ago by KVC_bioinfo • 310 • updated 10 months ago by Ram ♦ 16k
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