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<prev • 269 results • page 1 of 9 • next >
3
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Tools for finding tissue specific gene expression "markers"?
transcriptome gene expression markers written 21 months ago by arvchi • 40 • updated 17 hours ago by Shamim Sarhadi • 210
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Submitting many transcriptomes to TSA - how to automatize?
ncbi submition tsa database transcriptome written 3 days ago by al-ash • 110
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84
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How to compare the alignment to genome and transcriptome
genome alignment rna-seq transcriptome written 8 days ago by Xiaokang ZH • 40 • updated 8 days ago by ATpoint ♦ 21k
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81
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Detecting GC Bias in Transcriptomes (RNA-seq)
rna-seq transcriptome written 17 days ago by Jon17 • 10
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How do I subset a fasta file to only contain transcripts with NO BLAST hits?
annotation rna-seq transcriptome written 11 weeks ago by whw84 • 0 • updated 23 days ago by Biostar ♦♦ 20
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110
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ensembl - Gene ID - Transcript ID
genome ensembl transcriptome written 4 weeks ago by soleimani_homa • 0 • updated 4 weeks ago by Emily_Ensembl ♦ 18k
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Regions of interest in IGV when aligning to the transcriptome
transcriptome R alignment igv written 5 weeks ago by r.t.greenblatt • 0
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7 follow
3
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Tools For De Novo Transcriptome Assembly Of Hybrid 454+Illumina Reads?
illumina rna transcriptome written 7.5 years ago by Ahdf-Lell-Kocks • 1.6k • updated 5 weeks ago by jthoward93 • 0
6
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163
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Where can I download the Danio Rerio (zebrafish) transcriptome?
zebrafish salmon rna-seq genomics transcriptome written 8 weeks ago by dtatarak • 10 • updated 6 weeks ago by Biostar ♦♦ 20
10
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2
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203
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Best practices for differential expression analysis
best transcriptome mapping bowtie rna-seq written 7 weeks ago by flogin • 150 • updated 7 weeks ago by Bastien Hervé ♦ 4.4k
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79
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Genome-guided transcriptome reconstruction
rna-seq transcriptome written 8 weeks ago by caggtaagtat • 700
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1
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155
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1
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Arabidopsis thaliana transcriptome annotation
annotation arabidopsis thaliana transcriptome written 12 weeks ago by thulani.m.hewavithana • 0 • updated 12 weeks ago by darbinator • 190
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427
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Trimming sequences based on NCBI contamination screen report
ncbi assembly transcriptome written 7 months ago by T_18 • 40 • updated 3 months ago by hjafar • 0
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6 follow
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Transcriptome Assembly Of Illumina Reads On Low-Mem Machines?
assembly memory transcriptome written 8.3 years ago by 2184687-1231-83- • 5.0k • updated 3 months ago by Biostar ♦♦ 20
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IGV interpretation of assembled and annotated transcriptome reads in an allotetraploid
duplicate allotetraploid igv rna-seq transcriptome written 4 months ago by ksgouros • 0 • updated 4 months ago by Biostar ♦♦ 20
0
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1
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386
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1
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Genome Guided Transcriptome assembly
genome assembly rna-seq transcriptome written 5 months ago by msobol • 20 • updated 5 months ago by Buffo • 1.6k
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3
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7 follow
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An approximate number of human genes, transcripts, proteins and metabolites?
genome proteome metabolome transcriptome written 2.4 years ago by ahmadbiotech • 30 • updated 5 months ago by zx8754 ♦ 7.9k
2
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1
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287
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1
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How to run Trinotate
assembly trinotate rna-seq transcriptome written 5 months ago by luzglongoria • 20
10
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1
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6 follow
1
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Advice : Building Transcript Models Using Cufflinks
cufflinks rna-seq transcriptome written 7.3 years ago by Abhi • 1.5k • updated 5 months ago by Biostar ♦♦ 20
1
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254
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5 follow
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Basic question about SWISSPROT
swissprot rna-seq transcriptome written 6 months ago by luzglongoria • 20
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 9 months ago by uk_plant_parasite_genome • 0 • updated 6 months ago by Biostar ♦♦ 20
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3
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423
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3
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How calculate CG content for each contig in an transcript assembly?
cg content assembly contig rna-seq transcriptome written 7 months ago by luzglongoria • 20 • updated 7 months ago by lakhujanivijay ♦ 4.3k
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300
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Assembling ESTs and illumina reads
ests illumina de-novo transcriptome written 7 months ago by Joseph Hughes • 2.7k
3
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1
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447
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1
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Comparing Multiple Species RNA seq data
transcriptome evolution rna-seq comparative written 7 months ago by Lmira zand • 0 • updated 7 months ago by johnsonnathant • 80
0
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1
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301
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1
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Meta_analysis of different platforms of microarray data
meta analysis microarray R transcriptome written 7 months ago by j_jamal96 • 0 • updated 7 months ago by Kevin Blighe ♦ 46k
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377
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Mapping with GMAP: which output option shall I use?
genome assembly transcriptome written 7 months ago by luzglongoria • 20
2
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1
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414
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1
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Transcript assembly with nanopore long reads
assembly long reads transcriptome written 7 months ago by caggtaagtat • 700 • updated 7 months ago by colindaven • 1.6k
0
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237
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Pre-filtering transcriptome data by gene type
rna-seq non-coding rna transcriptome written 7 months ago by rrbutleriii • 70
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620
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1
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How to map RNA-seq with hisat2, stringtie, an assembly fasta, a gtf file, and a transcript fasta?
stringtie hisat2 mapping transcriptome written 7 months ago by O.rka • 110 • updated 7 months ago by swbarnes2 ♦ 6.1k
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341
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How to prepare input data for DiffCoEx
wgcna transcriptome R written 8 months ago by Reza • 0
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