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4
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1
answer
84
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1
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RNASeq data analysis without control
rna-seq deg transcriptome written 4 days ago by devarora • 110
4
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1
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1.6k
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7 follow
1
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EvidentialGene reduces redundancy of de novo transcriptome assembly?
assembly transcriptome rna-seq trinity redundancy written 2.8 years ago by crimsontabaq • 40 • updated 4 weeks ago by reutnuri • 0
2
votes
1
answer
103
views
1
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RNAseq cell line as a covariate
rnaseq deseq2 cellline transcriptome written 4 weeks ago by gradstudentNew • 30 • updated 4 weeks ago by Kevin Blighe ♦ 56k
1
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0
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53
views
0
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min_contig_length parameter in Trinity - Isoforms discrimination
assembly transcriptome trinity written 4 weeks ago by Light92 • 20
3
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0
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76
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0
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Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity assembly transcriptome written 4 weeks ago by Light92 • 20
5
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1
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167
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1
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How to perform transcriptomic clustering to find bad samples?
rna-seq transcriptome written 6 weeks ago by c_u • 200
1
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2
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152
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2
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Trimming of fasta file headers
fasta rna rna-seq transcriptome written 6 weeks ago by 2822462298 • 50 • updated 6 weeks ago by tshtatland • 60
3
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1
answer
155
views
1
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How to identify 3'UTR region?
mrna genome rna-seq transcriptome written 7 weeks ago by 2822462298 • 50 • updated 6 weeks ago by i.sudbery ♦ 7.2k
0
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0
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70
views
0
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GTF to match transcriptome data in TopHat
gtf tophat transcriptome written 7 weeks ago by blur • 110
0
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0
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99
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0
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Best alignment software for mapping short DNA reads to transcriptome?
transcriptome alignment dna written 9 weeks ago by Joel Wallenius • 70
0
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0
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119
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0
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transcriptome and methylome dataset for various immune cells
dataset immune cell transcriptome methylome written 3 months ago by Jung-ho Kong • 0
0
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0
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185
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0
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tBLASTn - Warning: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options
software error alignment blast transcriptome written 3 months ago by molly77 • 10
0
votes
1
answer
205
views
1
answer
Subset Function in Ballgown
differential expression transcriptome written 4 months ago by msobol • 30 • updated 4 months ago by Amar • 640
0
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0
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199
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0
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How to minimize chimeric transcripts assembled with StringTie
stringtie rna-seq transcriptome written 5 months ago by alex.zaccaron • 130
4
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0
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228
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0
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Maker2 Transcriptome Input
annotation trinity maker2 transcriptome written 6 months ago by Colaptes • 40
3
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1
answer
220
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1
answer
N 50 Value
assembly transcriptome trinity written 6 months ago by ravichandiranbt • 10 • updated 6 months ago by WouterDeCoster ♦ 43k
3
votes
1
answer
1.2k
views
5 follow
1
answer
Tools for finding tissue specific gene expression "markers"?
transcriptome gene expression markers written 2.4 years ago by arvchi • 50 • updated 7 months ago by Shamim Sarhadi • 210
1
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0
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275
views
0
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Submitting many transcriptomes to TSA - how to automatize?
ncbi submition tsa database transcriptome written 7 months ago by al-ash • 140
0
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0
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338
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0
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How to compare the alignment to genome and transcriptome
genome alignment rna-seq transcriptome written 7 months ago by Xiaokang ZH • 40 • updated 7 months ago by ATpoint ♦ 31k
1
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0
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244
views
0
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Detecting GC Bias in Transcriptomes (RNA-seq)
rna-seq transcriptome written 8 months ago by Jon17 • 10
2
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0
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310
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0
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How do I subset a fasta file to only contain transcripts with NO BLAST hits?
annotation rna-seq transcriptome written 10 months ago by whw84 • 0 • updated 8 months ago by Biostar ♦♦ 20
0
votes
1
answer
277
views
1
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ensembl - Gene ID - Transcript ID
genome ensembl transcriptome written 8 months ago by soleimani_homa • 0 • updated 8 months ago by Emily_Ensembl ♦ 20k
0
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0
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172
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0
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Regions of interest in IGV when aligning to the transcriptome
transcriptome R alignment igv written 8 months ago by r.t.greenblatt • 0
8
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3
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3.5k
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7 follow
3
answers
Tools For De Novo Transcriptome Assembly Of Hybrid 454+Illumina Reads?
illumina rna transcriptome written 8.2 years ago by Ahdf-Lell-Kocks • 1.6k • updated 8 months ago by jthoward93 • 0
6
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1
answer
402
views
1
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Where can I download the Danio Rerio (zebrafish) transcriptome?
zebrafish salmon rna-seq genomics transcriptome written 9 months ago by dtatarak • 10 • updated 9 months ago by Biostar ♦♦ 20
10
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2
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527
views
5 follow
2
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Best practices for differential expression analysis
best transcriptome mapping bowtie rna-seq written 9 months ago by flogin • 190 • updated 9 months ago by Bastien Hervé ♦ 4.5k
0
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0
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156
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0
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Genome-guided transcriptome reconstruction
rna-seq transcriptome written 9 months ago by caggtaagtat • 930
5
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1
answer
283
views
1
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Arabidopsis thaliana transcriptome annotation
annotation arabidopsis thaliana transcriptome written 10 months ago by thulani.m.hewavithana • 0 • updated 10 months ago by darbinator • 220
1
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0
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785
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0
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Trimming sequences based on NCBI contamination screen report
ncbi assembly transcriptome written 14 months ago by T_18 • 40 • updated 11 months ago by hjafar • 0
11
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4
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2.7k
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6 follow
4
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Transcriptome Assembly Of Illumina Reads On Low-Mem Machines?
assembly memory transcriptome written 8.9 years ago by 2184687-1231-83- • 5.0k • updated 11 months ago by Biostar ♦♦ 20
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