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two transcriptomes, same RNAseq, different results. why?
rna-seq transcriptome written 1 day ago by rm5585 • 0
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108
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Crash Galaxy mapping of rna-seq on transcriptome
alignment galaxy rna-seq transcriptome written 1 day ago by profjdyme • 0
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1
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139
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1
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GSEA produces too few enriched sets
kallisto gsea transcriptome written 6 days ago by crimsontabaq • 30 • updated 5 days ago by kristoffer.vittingseerup • 100
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3
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122
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3
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How to improve existing transcriptome annotation using cufflink protocol ?
assembly cufflink cuffmerge transcriptome written 10 days ago by Chirag Parsania • 240 • updated 10 days ago by kristoffer.vittingseerup • 100
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147
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Cuffdiff with 2 conditions and time series
time series cuffdiff rna-seq transcriptome written 11 weeks ago by KL • 0 • updated 17 days ago by Biostar ♦♦ 20
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2
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89
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Finding fragemented transcriptome
denovo_assembly transcriptome written 17 days ago by EVR • 430 • updated 17 days ago by Rohit • 1.1k
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135
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[RNAseq] Do anyone have already-built Hisat2 indexes files for human genome (GRCh37 ) ?
hisat2 indexes files rna-seq transcriptome written 19 days ago by atonidas • 0 • updated 19 days ago by vish • 80
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1
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192
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1
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Merging stringtie assemblies using stringtie merge
assembly stringtie merge rna-seq transcriptome written 9 weeks ago by Vijay Lakhujani • 940
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210
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Reference Transcriptome for hg19
salmon transcriptome reference rna-seq hg19 written 9 weeks ago by stefanos.bamopoulos • 30
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5 follow
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Transcripome Data Analysis Using Cd-Hits
gene transcriptome written 5.6 years ago by Kiriya • 100 • updated 11 weeks ago by njtulsani • 20
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239
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Transcriptomes comparison and check for shared transcripts with arbitrary similarity
rnaseq de novo assembly transcriptome written 4 months ago by pbigbig • 170
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125
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Transcriptome assembly to validate annotations
assembly annotations rna-seq transcriptome written 3 months ago by guillaume.rbt • 280
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3
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226
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6 follow
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An approximate number of human genes, transcripts, proteins and metabolites?
genome proteome metabolome transcriptome written 3 months ago by ahmadbiotech • 10 • updated 3 months ago by Denise - Open Targets • 3.9k
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152
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Database for transcript and protein quantities?
proteome database transcriptome written 3 months ago by ericbrenner • 0 • updated 3 months ago by Lars Juhl Jensen ♦ 10k
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1
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How to blast against published transcriptome data
blast transcriptome written 17 months ago by Yongjie Zhang • 80 • updated 3 months ago by Biostar ♦♦ 20
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1
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269
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1
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Normalization of RNAseq data and the use of de novo transcriptome
dge rna-seq denovo transcriptome written 4 months ago by BioBing • 70 • updated 3 months ago by theobroma22 • 700
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243
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Job: Bioinformatics teaching session with graduate or freelance expert
R bioconductor gene expression job transcriptome written 3 months ago by ab123 • 0
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1
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241
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1
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TopHat Report Transcript Alignment
tophat alignment transcriptome written 3 months ago by athey.johnc • 40 • updated 3 months ago by Carlo Yague • 2.9k
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328
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Job: Looking for an open-source programmer, Yokohama, Japan
open-source japan single cells job transcriptome written 4 months ago by Charles Plessy • 2.0k
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3
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345
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3
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transcriptome assembly evaluation
assembly transcriptome written 9 months ago by dovah • 30 • updated 4 months ago by BioBing • 70
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264
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Convert transcript position to genomic position
mirna rna-seq transcriptome written 4 months ago by aaaa • 10
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257
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using gmap to find tss and tes in genome file.
gmap genome alignment transcriptome written 4 months ago by a.rex • 60
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204
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Why should you not use an ingroup species for genome-guided transcriptome reconstruction?
transcriptome phylogenetics rna-seq genome-guided written 5 months ago by rachelrodgers12 • 0
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How To Create A Header For A File Generated Via Transdecoder
rnaseq annotation transcriptome written 3.4 years ago by alok.helix • 60 • updated 5 months ago by Biostar ♦♦ 20
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1
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348
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1
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Confusion regarding Trinity analyze_diff_expr.pl
trinity differential expression transcriptome written 6 months ago by pbigbig • 170 • updated 5 months ago by Farbod • 2.9k
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1
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366
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1
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error will using transdecoder.predict
transdecoder transcriptome written 6 months ago by najibveto • 30 • updated 6 months ago by EVR • 430
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245
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annotating transposons in transcriptome
transposons repeatmasker transcriptome written 6 months ago by a.rex • 60
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314
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transcriptome shotgun assembly annotation
assembly transcriptome written 6 months ago by najibveto • 30 • updated 6 months ago by Farbod • 2.9k
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1
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888
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6 follow
1
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GC content calculation
trinity gc content transcriptome written 6 months ago by pbigbig • 170 • updated 6 months ago by Brian Bushnell ♦ 12k
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296
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Test fold change significany using duplicate reference transcriptome (RNA-Seq)
transcriptome rna-seq fold change written 7 months ago by songzewei • 0 • updated 7 months ago by Tonor • 400
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