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<prev • 273 results • page 1 of 10 • next >
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Subset Function in Ballgown
differential expression transcriptome written 14 days ago by msobol • 20 • updated 14 days ago by Amar • 480
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110
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How to minimize chimeric transcripts assembled with StringTie
stringtie rna-seq transcriptome written 4 weeks ago by alex.zaccaron • 110
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164
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Maker2 Transcriptome Input
annotation trinity maker2 transcriptome written 8 weeks ago by Colaptes • 40
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1
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150
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N 50 Value
assembly transcriptome trinity written 9 weeks ago by ravichandiranbt • 10 • updated 9 weeks ago by WouterDeCoster ♦ 42k
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5 follow
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Tools for finding tissue specific gene expression "markers"?
transcriptome gene expression markers written 2.0 years ago by arvchi • 50 • updated 3 months ago by Shamim Sarhadi • 210
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Submitting many transcriptomes to TSA - how to automatize?
ncbi submition tsa database transcriptome written 3 months ago by al-ash • 110
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205
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How to compare the alignment to genome and transcriptome
genome alignment rna-seq transcriptome written 3 months ago by Xiaokang ZH • 40 • updated 3 months ago by ATpoint ♦ 26k
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148
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Detecting GC Bias in Transcriptomes (RNA-seq)
rna-seq transcriptome written 3 months ago by Jon17 • 10
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How do I subset a fasta file to only contain transcripts with NO BLAST hits?
annotation rna-seq transcriptome written 5 months ago by whw84 • 0 • updated 3 months ago by Biostar ♦♦ 20
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185
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ensembl - Gene ID - Transcript ID
genome ensembl transcriptome written 4 months ago by soleimani_homa • 0 • updated 4 months ago by Emily_Ensembl ♦ 19k
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Regions of interest in IGV when aligning to the transcriptome
transcriptome R alignment igv written 4 months ago by r.t.greenblatt • 0
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7 follow
3
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Tools For De Novo Transcriptome Assembly Of Hybrid 454+Illumina Reads?
illumina rna transcriptome written 7.8 years ago by Ahdf-Lell-Kocks • 1.6k • updated 4 months ago by jthoward93 • 0
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245
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Where can I download the Danio Rerio (zebrafish) transcriptome?
zebrafish salmon rna-seq genomics transcriptome written 5 months ago by dtatarak • 10 • updated 4 months ago by Biostar ♦♦ 20
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5 follow
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Best practices for differential expression analysis
best transcriptome mapping bowtie rna-seq written 4 months ago by flogin • 150 • updated 4 months ago by Bastien Hervé ♦ 4.5k
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Genome-guided transcriptome reconstruction
rna-seq transcriptome written 5 months ago by caggtaagtat • 870
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1
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218
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Arabidopsis thaliana transcriptome annotation
annotation arabidopsis thaliana transcriptome written 6 months ago by thulani.m.hewavithana • 0 • updated 6 months ago by darbinator • 190
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567
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Trimming sequences based on NCBI contamination screen report
ncbi assembly transcriptome written 10 months ago by T_18 • 40 • updated 6 months ago by hjafar • 0
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4
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6 follow
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Transcriptome Assembly Of Illumina Reads On Low-Mem Machines?
assembly memory transcriptome written 8.5 years ago by 2184687-1231-83- • 5.0k • updated 7 months ago by Biostar ♦♦ 20
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240
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IGV interpretation of assembled and annotated transcriptome reads in an allotetraploid
duplicate allotetraploid igv rna-seq transcriptome written 7 months ago by ksgouros • 0 • updated 7 months ago by Biostar ♦♦ 20
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1
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562
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Genome Guided Transcriptome assembly
genome assembly rna-seq transcriptome written 8 months ago by msobol • 20 • updated 8 months ago by Buffo • 1.7k
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3
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7 follow
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An approximate number of human genes, transcripts, proteins and metabolites?
genome proteome metabolome transcriptome written 2.7 years ago by ahmadbiotech • 30 • updated 8 months ago by zx8754 ♦ 8.4k
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410
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1
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How to run Trinotate
assembly trinotate rna-seq transcriptome written 8 months ago by luzglongoria • 20
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6 follow
1
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Advice : Building Transcript Models Using Cufflinks
cufflinks rna-seq transcriptome written 7.5 years ago by Abhi • 1.5k • updated 8 months ago by Biostar ♦♦ 20
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328
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5 follow
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Basic question about SWISSPROT
swissprot rna-seq transcriptome written 9 months ago by luzglongoria • 20
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 12 months ago by uk_plant_parasite_genome • 0 • updated 10 months ago by Biostar ♦♦ 20
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How calculate CG content for each contig in an transcript assembly?
cg content assembly contig rna-seq transcriptome written 10 months ago by luzglongoria • 20 • updated 10 months ago by lakhujanivijay ♦ 4.6k
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339
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Assembling ESTs and illumina reads
ests illumina de-novo transcriptome written 10 months ago by Joseph Hughes • 2.8k
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Comparing Multiple Species RNA seq data
transcriptome evolution rna-seq comparative written 10 months ago by Lmira zand • 0 • updated 10 months ago by johnsonnathant • 80
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Meta_analysis of different platforms of microarray data
meta analysis microarray R transcriptome written 10 months ago by j_jamal96 • 0 • updated 10 months ago by Kevin Blighe ♦ 51k
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Mapping with GMAP: which output option shall I use?
genome assembly transcriptome written 10 months ago by luzglongoria • 20
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