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What is the fate of low coverage region during Trinity assembly of transcriptome data?
trinity transcriptome assembly written 3 days ago by MAPK • 1.3k
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2
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114
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2
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error while Kissplice run
kissplice snp transcriptome written 19 days ago by KG • 10
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624
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Average number of contigs per scaffold
assembly next-gen rna-seq alignment transcriptome written 2.6 years ago by Rahul • 30 • updated 23 days ago by RamRS ♦ 18k
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125
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Genome annotation using transcriptome data
genome annotation transcriptome written 5 weeks ago by KG • 10
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331
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de novo transcriptome assembly of Oxford Nanopore Technologies long reads
assembly transcriptome rna-seq denovo ont written 10 weeks ago by Alicia • 10
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Using rna-seq, why map reads to the genome but calculate gene expression by aligning to the transcriptome?
genome rna-seq transcriptome written 3.3 years ago by jgbradley1 • 90 • updated 11 weeks ago by Tom K • 0
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1
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Where I can download a reference genome of a pine tree transcriptome?
plant reference conifer transcriptome written 11 weeks ago by conifer_genomics_uk • 0 • updated 11 weeks ago by genomax ♦ 57k
4
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1
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161
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1
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How to approach QTL for transcriptomic data?
qtl snp transcriptome written 12 weeks ago by niccolo.fran • 0 • updated 12 weeks ago by EagleEye ♦ 5.7k
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1
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198
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1
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TransDecoder: Filtering *_longest_orfs.pep Results
next-gen transdecoder cdna sequence transcriptome written 3 months ago by mduhon8 • 0 • updated 3 months ago by h.mon ♦ 20k
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1
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162
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1
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sortmerna showing problem of nucleotide length
ion proton s5 rna-seq transcriptome written 3 months ago by ppnana • 0 • updated 3 months ago by Nitin Narwade • 270
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181
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Problems in identifying heterozygous transcripts using de novo transcriptome assembly via Trinity (galaxy)
assembly rna-seq transcriptome written 5 months ago by aih5 • 0 • updated 3 months ago by Biostar ♦♦ 20
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187
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Transcriptomics and gKaKs pipeline
gkaks next-gen rna-seq transcriptome written 5 months ago by mac123 • 0 • updated 3 months ago by Biostar ♦♦ 20
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169
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What is "Possible polymerase run-on fragment"?
transcriptome written 4 months ago by I0110 • 110
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718
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using gmap to find tss and tes in genome file.
gmap genome alignment transcriptome written 20 months ago by a.rex • 150 • updated 4 months ago by Biostar ♦♦ 20
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226
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CDS prediction for newly assembled transcripts
assembly transcriptome rna-seq cds written 4 months ago by I0110 • 110
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11 follow
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Human Gene Regulatory Database
database transcriptome written 5.7 years ago by pavishivakumar • 90 • updated 5 months ago by c.chakraborty • 90
4
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1
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227
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1
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Generate transcriptome fasta for RNA-seq analysis with Salmon
rna-seq transcriptome written 5 months ago by guillaume.rbt • 450
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262
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Given a list of RefSeq homo sapiens mRNA transcripts, what is the simplest way to get the corresponding sequences from some other related species?
alignment orthology transcriptome written 6 months ago by Joel Wallenius • 10
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133
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A question about modular pipeline for transcriptome
pipeline transcriptome written 6 months ago by leboralli • 0
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1
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265
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1
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Blast2GO tolerant susceptible stress
plant stress blast2go rna-seq transcriptome written 7 months ago by susana.ramirez.par • 0 • updated 7 months ago by sgoetz123 • 10
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1
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293
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5 follow
1
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Strategy for genome annotation for a new individual of a well-established species
assembly annotation transcriptome written 7 months ago by liorglic • 40 • updated 7 months ago by Rohit • 1.3k
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5
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688
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5 follow
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How to improve existing transcriptome annotation using cufflink protocol ?
assembly cufflink cuffmerge transcriptome written 16 months ago by Chirag Parsania • 940 • updated 7 months ago by colindaven • 800
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1
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697
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1
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How to get --transcript-to-gene-map <file> in RSEM?
index reference rsem rna-seq transcriptome written 8 months ago by sciencer • 60
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1
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6 follow
1
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Advice : Building Transcript Models Using Cufflinks
cufflinks rna-seq transcriptome written 6.4 years ago by Abhi • 1.5k • updated 8 months ago by Biostar ♦♦ 20
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411
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Unable to locate package tcc:i386
annotation annocript transcriptome rna-seq linux written 9 months ago by arsilan324 • 60
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347
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Unable to perform tbl2asn for submission of transcriptome to Genbank
ncbi annotation tbl2asn submission transcriptome written 9 months ago by arsilan324 • 60
1
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1
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853
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1
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Cutoff for TPM value
tpm transcriptome written 12 months ago by Picasa • 380 • updated 9 months ago by Macspider • 2.6k
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1
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600
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5 follow
1
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Calculate RNAseq coverage of a transcript
rna-seq transcriptome written 10 months ago by andrey.v.shubin • 50
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2
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6 follow
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[RNAseq] Do anyone have already-built Hisat2 indexes files for human genome (GRCh37 ) ?
hisat2 indexes files rna-seq transcriptome written 16 months ago by atonidas • 0 • updated 10 months ago by ag1805x • 90
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Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 11 months ago by pablo61991 • 40 • updated 11 months ago by genomax ♦ 57k
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