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<prev • 226 results • page 1 of 8 • next >
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Transcriptomics and gKaKs pipeline
gkaks next-gen rna-seq transcriptome written 4 days ago by mac123 • 0
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Given a list of RefSeq homo sapiens mRNA transcripts, what is the simplest way to get the corresponding sequences from some other related species?
alignment orthology transcriptome written 13 days ago by Joel Wallenius • 10
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40
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A question about modular pipeline for transcriptome
pipeline transcriptome written 14 days ago by leboralli • 0
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145
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Blast2GO tolerant susceptible stress
plant stress blast2go rna-seq transcriptome written 6 weeks ago by susana.ramirez.par • 0 • updated 6 weeks ago by sgoetz123 • 10
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Strategy for genome annotation for a new individual of a well-established species
assembly annotation transcriptome written 7 weeks ago by liorglic • 40 • updated 7 weeks ago by Rohit • 1.3k
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How to improve existing transcriptome annotation using cufflink protocol ?
assembly cufflink cuffmerge transcriptome written 10 months ago by Chirag Parsania • 430 • updated 8 weeks ago by colindaven • 600
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191
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How to get --transcript-to-gene-map <file> in RSEM?
index reference rsem rna-seq transcriptome written 10 weeks ago by sciencer • 30
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Advice : Building Transcript Models Using Cufflinks
cufflinks rna-seq transcriptome written 6.0 years ago by Abhi • 1.4k • updated 10 weeks ago by Biostar ♦♦ 20
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207
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Unable to locate package tcc:i386
annotation annocript transcriptome rna-seq linux written 3 months ago by arsilan324 • 40
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Unable to perform tbl2asn for submission of transcriptome to Genbank
ncbi annotation tbl2asn submission transcriptome written 3 months ago by arsilan324 • 40
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Cutoff for TPM value
tpm transcriptome written 6 months ago by Picasa • 340 • updated 4 months ago by Macspider • 2.4k
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Calculate RNAseq coverage of a transcript
rna-seq transcriptome written 4 months ago by andrey.v.shubin • 50
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[RNAseq] Do anyone have already-built Hisat2 indexes files for human genome (GRCh37 ) ?
hisat2 indexes files rna-seq transcriptome written 10 months ago by atonidas • 0 • updated 4 months ago by ag1805x • 80
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Doubts using Velvet (transcriptome assembly) mainly in performance
de novo assembly velvet rna-seq transcriptome written 5 months ago by pablo61991 • 40 • updated 5 months ago by genomax ♦ 46k
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Tools for finding tissue specific gene expression "markers"?
transcriptome gene expression markers written 5 months ago by arvchi • 20
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What may be causing super high duplication results in BUSCO?
assembly busco rna-seq transcriptome written 6 months ago by guillermo.ponz.segrelles • 0 • updated 6 months ago by gilbert.bionet • 110
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500
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Filter transcripts based on expression value: TPM vs TMM ?
transcriptome tpm tmm written 6 months ago by Picasa • 340
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210
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Whole-transcriptome RNASeq data of RNA-i engineered organism
transgene rnai sequencing rna-seq transcriptome written 6 months ago by Macspider • 2.4k
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270
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Does it make sense to limit insert size when mapping on transcriptome?
rnaseq insert size mapping transcriptome written 7 months ago by Macspider • 2.4k
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403
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SAM Flags for illumina paired-end reads mapped on transcriptome
paired-end alignment sam flags transcriptome written 7 months ago by Macspider • 2.4k • updated 7 months ago by Devon Ryan ♦ 78k
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Human transcriptome reference for RNASeq analysis
rna-seq human transcriptome written 2.4 years ago by Biomonika (Noolean) ♦ 3.0k • updated 7 months ago by KVC_bioinfo • 310
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Aligning RNA seq data to genome or transcriptome
genome ngs rna-seq transcriptome written 7 months ago by KVC_bioinfo • 310 • updated 7 months ago by Ram ♦ 14k
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684
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Trinity Error, not recognizing read name formatting: [1]
de novo trinity transcriptome rna-seq assembly written 8 months ago by Shahzad • 10
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451
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News: Spatio-temporal Transcriptome of LncRNAs in Human Brain
parkinson alzheimer news brain transcriptome lncrna written 9 months ago by lsp03yjh • 520
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470
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News: PDX Models: Tumor-stroma interaction
R pdx chip-seq news transcriptome written 9 months ago by Pine Biotech • 20
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671
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Problem building reference genome using STAR
star transcriptome written 9 months ago by ashish • 200
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Mapping onto the Transcriptome, RNA-seq
transcriptome rna-seq bowtie hisat2 written 9 months ago by asyndeton17 • 10 • updated 9 months ago by Rob ♦ 2.3k
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295
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Gene duplications in Transcriptome
genome trinity duplication transcriptome written 9 months ago by Edphid • 0
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465
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Assembling a Transcriptome using Trinity with multiple Illumina Fastq files
trinity illumina rna-seq transcriptome written 9 months ago by Bioinformatics_finn • 0 • updated 9 months ago by carlopecoraro2 • 650
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EvidentialGene reduces redundancy of de novo transcriptome assembly?
assembly transcriptome rna-seq trinity redundancy written 10 months ago by crimsontabaq • 40 • updated 10 months ago by gilbert.bionet • 110
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