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Subset Function in Ballgown
differential expression transcriptome written 9 months ago by mss • 30 • updated 4 weeks ago by zhhxu9 • 10
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0
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96
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Find transcripts of one species in RNA-assembly
metagenome rna-seq blast transcriptome written 5 weeks ago by Tom • 530
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83
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Same transceiptome data with or without replicates
rna-seq transcriptome written 8 weeks ago by rprog008 • 70
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1
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115
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1
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what should I do first: transciptome annotation or DE analysis?
assembly transcriptome rna-seq annotation written 9 weeks ago by vinicius • 10 • updated 9 weeks ago by kristoffer.vittingseerup • 3.4k
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109
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1
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Where to find reference transcriptome for firefly?
scrna-seq alignment cellranger transcriptome written 12 weeks ago by jrleary • 120 • updated 12 weeks ago by genomax ♦ 87k
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119
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Conservation of co-expressed genes across transcriptomes
sequence evolution rna-seq transcriptome written 3 months ago by khhgng • 70
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evigene pipeline failure: missing cdna_bestorf.pl
evigene rna-seq transcriptome written 3.7 years ago by lplough • 30 • updated 3 months ago by tomeksilentfall • 0
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1
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169
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1
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RNASeq data analysis without control
rna-seq deg transcriptome written 4 months ago by devarora • 150
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7 follow
1
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EvidentialGene reduces redundancy of de novo transcriptome assembly?
assembly transcriptome rna-seq trinity redundancy written 3.1 years ago by crimsontabaq • 40 • updated 5 months ago by reutnuri • 0
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1
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169
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1
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RNAseq cell line as a covariate
rnaseq deseq2 cellline transcriptome written 5 months ago by gradstudentNew • 30 • updated 5 months ago by Kevin Blighe ♦ 63k
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125
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min_contig_length parameter in Trinity - Isoforms discrimination
assembly transcriptome trinity written 5 months ago by Light92 • 20
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179
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Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity assembly transcriptome written 5 months ago by Light92 • 20
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1
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260
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1
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How to perform transcriptomic clustering to find bad samples?
rna-seq transcriptome written 5 months ago by c_u • 250
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241
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Trimming of fasta file headers
fasta rna rna-seq transcriptome written 5 months ago by 2822462298 • 50 • updated 5 months ago by tshtatland • 60
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1
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257
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How to identify 3'UTR region?
mrna genome rna-seq transcriptome written 5 months ago by 2822462298 • 50 • updated 5 months ago by i.sudbery ♦ 8.3k
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131
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GTF to match transcriptome data in TopHat
gtf tophat transcriptome written 6 months ago by blur • 120
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173
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Best alignment software for mapping short DNA reads to transcriptome?
transcriptome alignment dna written 6 months ago by Joel Wallenius • 70
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181
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transcriptome and methylome dataset for various immune cells
dataset immune cell transcriptome methylome written 7 months ago by Jung-ho Kong • 0
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348
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tBLASTn - Warning: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options
software error alignment blast transcriptome written 8 months ago by molly77 • 10
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309
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How to minimize chimeric transcripts assembled with StringTie
stringtie rna-seq transcriptome written 9 months ago by alex.zaccaron • 170
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315
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Maker2 Transcriptome Input
annotation trinity maker2 transcriptome written 10 months ago by Colaptes • 40
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1
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298
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1
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N 50 Value
assembly transcriptome trinity written 10 months ago by ravichandiranbt • 10 • updated 10 months ago by WouterDeCoster ♦ 44k
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5 follow
1
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Tools for finding tissue specific gene expression "markers"?
transcriptome gene expression markers written 2.7 years ago by arvchi • 50 • updated 11 months ago by Shamim Sarhadi • 210
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336
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Submitting many transcriptomes to TSA - how to automatize?
ncbi submition tsa database transcriptome written 11 months ago by al-ash • 140
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459
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How to compare the alignment to genome and transcriptome
genome alignment rna-seq transcriptome written 11 months ago by Xiaokang ZH • 40 • updated 11 months ago by ATpoint ♦ 36k
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349
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6 follow
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Detecting GC Bias in Transcriptomes (RNA-seq)
rna-seq transcriptome written 12 months ago by Jon17 • 20
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375
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How do I subset a fasta file to only contain transcripts with NO BLAST hits?
annotation rna-seq transcriptome written 14 months ago by whw84 • 0 • updated 12 months ago by Biostar ♦♦ 20
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396
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1
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ensembl - Gene ID - Transcript ID
genome ensembl transcriptome written 12 months ago by soleimani_homa • 0 • updated 12 months ago by Emily_Ensembl ♦ 21k
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231
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Regions of interest in IGV when aligning to the transcriptome
transcriptome R alignment igv written 13 months ago by r.t.greenblatt • 0
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7 follow
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Tools For De Novo Transcriptome Assembly Of Hybrid 454+Illumina Reads?
illumina rna transcriptome written 8.5 years ago by Ahdf-Lell-Kocks • 1.6k • updated 13 months ago by jthoward93 • 0
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