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0
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2
answers
111
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2
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Having made a paired-end and stranded-forward sequencing (NGS) implies that I will only get positive reading frames?
assembly transcriptome rna-seq illumina written 4 days ago by sofiablancoglez • 0
0
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0
answers
83
views
0
answers
Normalization for RNA-Seq samples
tissue specific rna-seq transcriptome written 7 days ago by DataFanatic • 260
0
votes
0
answers
63
views
0
answers
PacBio long-reads impact in transcriptome de novo assembly
de novo assembly long-reads rna-seq transcriptome written 7 days ago by Manuel Mendoza • 10
0
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1
answer
1.5k
views
1
answer
error will using transdecoder.predict
transdecoder transcriptome written 3.9 years ago by najibveto • 40 • updated 27 days ago by Biostar ♦♦ 20
1
vote
1
answer
112
views
1
answer
CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to build?)
mouse cast salmon transcriptome written 28 days ago by Rhodnius • 0 • updated 28 days ago by mark.ziemann • 1.3k
0
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0
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115
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0
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Is there any RNA-seq summary study for one certain"family" species?
specie rna-seq transcriptome written 4 weeks ago by wensulin93 • 0
2
votes
1
answer
562
views
1
answer
What is "Possible polymerase run-on fragment"?
transcriptome written 2.4 years ago by I0110 • 120 • updated 7 weeks ago by RamRS ♦ 30k
4
votes
2
answers
124
views
2
answers
multi species_gene name to description
gene function transcriptome written 9 weeks ago by Aremkh • 20 • updated 9 weeks ago by genomax ♦ 91k
0
votes
2
answers
480
views
2
answers
Subset Function in Ballgown
differential expression transcriptome written 11 months ago by mss • 30 • updated 3 months ago by zhhxu9 • 10
2
votes
0
answers
116
views
0
answers
Find transcripts of one species in RNA-assembly
metagenome rna-seq blast transcriptome written 4 months ago by Tom • 530
0
votes
0
answers
106
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0
answers
Same transceiptome data with or without replicates
rna-seq transcriptome written 4 months ago by rprog008 • 70
2
votes
1
answer
146
views
1
answer
what should I do first: transciptome annotation or DE analysis?
assembly transcriptome rna-seq annotation written 4 months ago by vinicius • 10 • updated 4 months ago by kristoffer.vittingseerup • 3.4k
1
vote
1
answer
134
views
1
answer
Where to find reference transcriptome for firefly?
scrna-seq alignment cellranger transcriptome written 5 months ago by jrleary • 130 • updated 5 months ago by genomax ♦ 91k
1
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0
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143
views
0
answers
Conservation of co-expressed genes across transcriptomes
sequence evolution rna-seq transcriptome written 6 months ago by khhgng • 70
0
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1
answer
1.5k
views
1
answer
evigene pipeline failure: missing cdna_bestorf.pl
evigene rna-seq transcriptome written 4.0 years ago by lplough • 30 • updated 6 months ago by tomeksilentfall • 0
4
votes
1
answer
194
views
1
answer
RNASeq data analysis without control
rna-seq deg transcriptome written 7 months ago by devarora • 240
4
votes
1
answer
1.8k
views
7 follow
1
answer
EvidentialGene reduces redundancy of de novo transcriptome assembly?
assembly transcriptome rna-seq trinity redundancy written 3.3 years ago by crimsontabaq • 50 • updated 8 months ago by reutnuri • 0
2
votes
1
answer
190
views
1
answer
RNAseq cell line as a covariate
rnaseq deseq2 cellline transcriptome written 8 months ago by gradstudentNew • 30 • updated 8 months ago by Kevin Blighe ♦ 66k
1
vote
0
answers
170
views
0
answers
min_contig_length parameter in Trinity - Isoforms discrimination
assembly transcriptome trinity written 8 months ago by Light92 • 20
3
votes
0
answers
262
views
0
answers
Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity assembly transcriptome written 8 months ago by Light92 • 20
5
votes
1
answer
305
views
1
answer
How to perform transcriptomic clustering to find bad samples?
rna-seq transcriptome written 8 months ago by c_u • 280
1
vote
2
answers
268
views
2
answers
Trimming of fasta file headers
fasta rna rna-seq transcriptome written 8 months ago by 2822462298 • 50 • updated 8 months ago by tshtatland • 60
3
votes
1
answer
298
views
1
answer
How to identify 3'UTR region?
mrna genome rna-seq transcriptome written 8 months ago by 2822462298 • 50 • updated 8 months ago by i.sudbery ♦ 9.4k
0
votes
0
answers
156
views
0
answers
GTF to match transcriptome data in TopHat
gtf tophat transcriptome written 8 months ago by blur • 140
0
votes
0
answers
211
views
0
answers
Best alignment software for mapping short DNA reads to transcriptome?
transcriptome alignment dna written 9 months ago by Joel Wallenius • 70
0
votes
0
answers
207
views
0
answers
transcriptome and methylome dataset for various immune cells
dataset immune cell transcriptome methylome written 10 months ago by Jung-ho Kong • 0
0
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0
answers
474
views
0
answers
tBLASTn - Warning: Could not calculate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options
software error alignment blast transcriptome written 10 months ago by molly77 • 10
0
votes
0
answers
351
views
0
answers
How to minimize chimeric transcripts assembled with StringTie
stringtie rna-seq transcriptome written 12 months ago by alex.zaccaron • 180
4
votes
0
answers
373
views
0
answers
Maker2 Transcriptome Input
annotation trinity maker2 transcriptome written 13 months ago by Colaptes • 40
3
votes
1
answer
346
views
1
answer
N 50 Value
assembly transcriptome trinity written 13 months ago by ravichandiranbt • 10 • updated 13 months ago by WouterDeCoster ♦ 44k
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