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how to get a readable scale on a particular R plot

R ema transcriptomic plot written 15 days ago by vmicrobio • 250

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RNA-seq + metabolomics paired dataset

metabolomics dataset transcriptomic written 3.7 years ago by a.b.versteeg • 0 • updated 2.6 years ago by raghavsehgal1995 • 0

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754

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Mapping 3'UTR from Trypanosoma cruzi

transcriptomic rna-seq written 2.8 years ago by wanessa_goes • 0 • updated 2.8 years ago by genomax ♦ 87k

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Recommendations for bacterial data integration and/or System Biology

metabolomic transcriptomic integration proteomic written 4.5 years ago by Antonio R. Franco • 4.5k • updated 4.5 years ago by andrew.j.skelton73 ♦ 6.0k

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Recent Replies

C: Tools to remove ambient RNA from single-nuclei data by genomax ♦ 87k
Can you clarify what do you mean by `ambient RNA`?
C: Which tools do you miss? by ete • 90
Would be very happy for feedback!
C: GC content of 10x Genomics by genomax ♦ 87k
There is no need to do FastQC for 10x data. You should proceed with `cellranger` analysis.
C: How to contiguate miseq assembly for Burkholderia by andres.firrincieli • 700
Could you check the quality of the assembly with CheckM? Just to be sure that you do not have any...
C: Which multiple sequence alignment algorithm should be used for small dataset? by macbas • 0
I will act accordingly. Once again, thanks!
C: Samtools merge BAM files using snakemake by User000 • 380
Actually, the number of libraries match the number of samples, sorry, my bad. Regarding the seco...
C: Cell Type Marker Databases? by Maximilian Haeussler • 1.3k
As for examples of cases where this has worked, you can look at the licenses of OMIM, UCSC Genome...
C: Cell Type Marker Databases? by Ashwini Patil • 10
Those are all very pertinent points and excellent suggestions. As an ex-academic myself, I actual...
C: Samtools merge BAM files using snakemake by Devon Ryan ♦ 96k
Since there isn't a 1:1 relationship between the LIBRARIES and SAMPLES you'll either need to use ...
C: Which tools do you miss? by Joe ♦ 17k
Cool forum idea. There are definitely some (usually quite niche web servers which go defunct). I'...
C: GC content of 10x Genomics by Assa Yeroslaviz • 1.4k
The R1 sequences should be either 26 or 28 bases long for 10x, depending on the chemistry. Theref...
A: GC content of 10x Genomics by Eugene A • 40
Hi, I also have some problems understanding Fastqc repots for scRNA data These are figures for R1...

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