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written 15 months ago by
bio94 • 40
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Santosh Anand ♦ 5.0k
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written 3.4 years ago by
YaGalbi • 1.4k
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onspotproductions • 140
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Recent Replies
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A: Interpretting a p-value from a fisher exact test? by
Ahill • 1.6k
Assuming single-tailed test, under the null hypothesis that there is no enrichment of diabetes ge...
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C: estimate tumor purity from target capture sequencing by
lffu_0032 • 40
thank you. i see that the facet is suit for tumor-normal pair calling, but i have only tumor-only...
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C: Low BUSCO completeness value for protists by
Sishuo Wang • 180
Apologizes for confusion. I meant that they used two reference gene sets: euk and protist. I am n...
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C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by
vkkodali • 1.5k
I think so. If you search of `txid2759[Organism]` in the NCBI Protein portal, you get >72M hit...
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C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by
protein_guru • 0
Good question. It was a mistake in part. The default behavior of ESearch is to return GIs, and I ...
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C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by
genomax ♦ 75k
https://www.biostars.org/u/30494/ : Would this method work for 10^7 gi numbers? Those are a lot t...
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C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by
genomax ♦ 75k
How did you end up using `gi` numbers? They were deprecated for end-users a couple of years ago. ...
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C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by
protein_guru • 0
Thanks, I'll give that a shot. I've also come across this post (https://ncbiinsights.ncbi.nlm.nih...
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C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by
vkkodali • 1.5k
You are correct, RefSeq release will not include the other proteins. I have myself never tested ...
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C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by
protein_guru • 0
Thanks for your reply. It appears that the RefSeq chunked DB won't necessarily contain all the se...
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C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by
vkkodali • 1.5k
If you can run your `esearch` query again, you can pipe it to `efetch -format acc` to get the acc...
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C: VCF filtering by depth by
ja4123 • 0
How to filter AF in vcf file with that way? There is a KeyError.
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