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0
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2
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158
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2
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Trim 3' ends from single-end reads
3' end single-end read trim written 25 days ago by Maria • 0
1
vote
1
answer
110
views
1
answer
Trimmomatic trims most of the reverse strand
trimmomatic fastq trim bwa written 6 weeks ago by hkarakurt • 100 • updated 6 weeks ago by genomax ♦ 92k
1
vote
1
answer
435
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1
answer
ATAC-Seq kmer removal
kmers fastqc atac-seq trim cutadapt written 9 months ago by elenichri • 10 • updated 9 months ago by h.mon ♦ 31k
2
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0
answers
491
views
0
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flexbar for many files
adapter flexbar rna-seq trim written 12 months ago by charadriussp • 0
0
votes
1
answer
285
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1
answer
primer trimming on katana
ngs katana primer trim written 20 months ago by shigej38 • 0
0
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1
answer
997
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1
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How to trim primers with cutadapt from .fastq.gz file?
primer tool trim cutadapt written 20 months ago by bayramliaziz • 0 • updated 20 months ago by finswimmer ♦ 14k
10
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5
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15k
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10 follow
5
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Trimming fastq with quality
fastq fastx rna-seq trim fastqc written 6.3 years ago by RafaelMP • 110 • updated 21 months ago by genomax ♦ 92k
11
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2
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2.4k
views
5 follow
2
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How to speed up trimming using trim galorer
fastq rna-seq trim written 22 months ago by lamia_203 • 80 • updated 22 months ago by mbk0asis • 570
0
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0
answers
388
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0
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Trim fasta to a specific gene location
fasta alignment sequence trim bash written 2.0 years ago by James • 20
5
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1
answer
723
views
1
answer
Have bbduk retain quality scores in output after kmer trimming
bbmap trim primer written 2.2 years ago by caverill • 40
1
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1
answer
2.1k
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1
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trimming RNA-seq reads with adapter sequence?index? using trimmomatic
trimmomatic adapter rna-seq trim written 3.0 years ago by woongjaej • 10 • updated 3.0 years ago by Jake Warner • 810
4
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2
answers
1.9k
views
2
answers
Trimming reads with prinseq
reads preprocessing prinseq qual trim written 3.0 years ago by deepti1rao • 30
6
votes
2
answers
1.6k
views
5 follow
2
answers
error while using cutadapt
trim cutadapt written 3.0 years ago by KVC_bioinfo • 510 • updated 3.0 years ago by chen • 2.1k
7
votes
1
answer
4.0k
views
1
answer
trimming nano pore reads based on quality score.
nanopore trim written 3.0 years ago by KVC_bioinfo • 510 • updated 3.0 years ago by WouterDeCoster ♦ 44k
1
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0
answers
1.1k
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0
answers
Trim read-specific adapter in paired-end reads
adapter trim written 3.1 years ago by Nicolas Rosewick ♦ 9.2k
0
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1
answer
1.1k
views
1
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Is it possible/recommended to trim RNA-Seq reads to a specific length
star-fusion chimerascan trim rna-seq written 3.7 years ago by komal.rathi • 3.7k • updated 3.5 years ago by Biostar ♦♦ 20
1
vote
0
answers
1.6k
views
0
answers
trimming reads from miseq
duplcation level miseq trim fastqc written 3.6 years ago by mary • 0
1
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0
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2.8k
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0
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Trim Reads From BAM files
bamutil bam trim written 3.8 years ago by fusion.slope • 240 • updated 3.7 years ago by Biostar ♦♦ 20
2
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1
answer
1.4k
views
1
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trim special lenght from special tile in a fastq file
tile trim per tile sequence quality written 3.8 years ago by mary • 0 • updated 3.8 years ago by Petr Ponomarenko • 2.6k
1
vote
0
answers
3.1k
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0
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How to trim adapters and remove polyA tails from QuantSeq 3' FWD data
poly-a tails rna-seq trim quantseq written 3.8 years ago by Chloe • 0
3
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1
answer
2.5k
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1
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How to clean bad tiles from Illumina reads?
illumina quality rna-seq trim fastqc written 3.8 years ago by blazer9191 • 0 • updated 3.8 years ago by harold.smith.tarheel • 4.6k
2
votes
1
answer
1.8k
views
1
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Use Bowtie to trim reads in fastq files
trim bowite written 3.8 years ago by Jackie • 70 • updated 3.8 years ago by Brian Bushnell ♦ 17k
1
vote
0
answers
941
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0
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trimming more than two paired mates
fastq trim written 4.0 years ago by igor ♦ 11k
3
votes
2
answers
2.0k
views
2
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Should I trim both R1 and R2 if only R2's quality is poor?
reads trimming trim fastqc written 4.4 years ago by lakhujanivijay ♦ 5.3k • updated 4.4 years ago by igor ♦ 11k
12
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1
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3.3k
views
1
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Tutorial: Trim & align paired-end reads in a single pass
tutorial paired-end fastq trim align pipe written 4.4 years ago by dariober ♦ 11k
6
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3
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4.5k
views
3
answers
Interpretation of FASTQC results - do I need to trim my sequence?
assembly sequencing trim illumina fastqc written 4.7 years ago by sallyanndunn18 • 10 • updated 4.7 years ago by chen • 2.1k
6
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1
answer
1.6k
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1
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Fa list for illumina sequencing adapters
illumina adapter trim sequencing written 5.0 years ago by Shicheng Guo • 8.5k • updated 5.0 years ago by h.mon ♦ 31k
0
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1
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1.9k
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1
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Cutadapt list of adapter
list of adapter trim cutadapt written 5.2 years ago by pingEde • 30 • updated 5.2 years ago by Pierre Lindenbaum ♦ 131k
0
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0
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1.4k
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0
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Trim barcode 3'
barcode primer trim cutadapt written 5.2 years ago by pingEde • 30 • updated 5.2 years ago by SES ♦ 8.4k
3
votes
3
answers
4.5k
views
3
answers
Trim sequences in FASTA file from sanger sequencing
sanger sequencing trim nnnn written 6.6 years ago by merajazizmeraj • 20
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