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<prev • 136 results • page 1 of 5 • next >
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working with Sanger fasta + qual + clip files
sanger trimming fastq written 5 days ago by sullis02 • 0 • updated 5 days ago by JC ♦ 7.6k
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89
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How to figure out which adapter has been used
adapter trimming degradome written 5 days ago by juan.crescente • 20 • updated 5 days ago by genomax ♦ 64k
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Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 13 days ago by ignazio.fontana • 0
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1
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What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 23 days ago by Gary • 450 • updated 22 days ago by h.mon ♦ 24k
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Suggestions for Trimmomatic and "illuminaclip" parameter
trimmomatic trimming illuminaclip rna-seq written 27 days ago by Batu • 110 • updated 27 days ago by caggtaagtat • 470
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Remove low quality base calls from reads
trimming alignment trim_galore variant calls written 7 weeks ago by kspata • 40 • updated 7 weeks ago by manuel.belmadani • 580
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PacBio raw data trimming and cleaning
trimming qc cleaning pacbio written 7 weeks ago by bwczech • 60
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195
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Trimmomatic "no such file or directory" error with reverse input
trimmomatic trimming written 11 weeks ago by emilyc • 0 • updated 11 weeks ago by finswimmer ♦ 11k
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trimmomatic: command not found
software error trimming written 3 months ago by SeaStar • 0
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Barcode cross contamination
barcode trimming written 3 months ago by Seigfried • 70
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Trimmomatic confirmation, multiple indeces per sample?!
trimmomatic rnaseq trimming written 3 months ago by T_18 • 20 • updated 3 months ago by finswimmer ♦ 11k
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150
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Length of the amplicon after trimming
trimming written 3 months ago by life99945 • 0
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FastQC report about WGBS.
trimming wgbs written 2.6 years ago by hxlei613 • 80 • updated 5 months ago by Biostar ♦♦ 20
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12 follow
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Illumina Trimming Algorithm
python trimming illumina written 8.7 years ago by Science_Robot • 1.1k • updated 6 months ago by RamRS ♦ 20k
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Trimming reads based on quality (Phred) scores
reads phredscore trimming qualityscore written 6 months ago by c.clarido • 40
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FASTQ file: duplicated sequences and overall poor quality
trimming fasqtc trimgalore written 6 months ago by piyushjo • 110
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5 follow
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Trimmomatic: Higher number of "forward only" than "reverse only" surviving reads
trimming rna-seq written 7 months ago by Lucila • 20
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2
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When do you strictly need to know the adapter sequence to trim NGS data?
trimming ngs adapter written 7 months ago by MAPK • 1.4k • updated 7 months ago by Gjain ♦ 5.3k
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5 follow
1
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How do I completely get rid of adapter sequence
trimming smallrnaseq adapter written 7 months ago by MAPK • 1.4k
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1
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268
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1
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Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 8 months ago by f.a.galkin • 30 • updated 8 months ago by finswimmer ♦ 11k
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Small RNAseq data with untrimmed reads left after trimming process
adapters trimming smallrnaseq rna-seq written 8 months ago by MAPK • 1.4k • updated 8 months ago by h.mon ♦ 24k
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How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 8 months ago by MAPK • 1.4k
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5 follow
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Adapter trimming of small RNAseq data
adapter smallrnaseq trimming rna-seq written 8 months ago by MAPK • 1.4k • updated 8 months ago by Brad Langhorst • 110
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Leftover adapter sequences after Trimmomatic trimming?
trimmomatic adapters trimming rna-seq written 8 months ago by annsun89 • 10 • updated 8 months ago by genomax ♦ 64k
3
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1
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703
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Cutadapt for paired end RRBS data
trimming rrbs cutadapt written 9 months ago by anikb • 10 • updated 9 months ago by Devon Ryan ♦ 88k
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6 follow
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kmer content failling with fastqc
illumina ngs bbduk trimming adaptor trimming written 10 months ago by slimane.khayi • 40
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Poly A trimming from RNA-seq data by bbduk (bbmap package)
polya trimming bbduk bbmap rna-seq written 10 months ago by seta • 1.1k • updated 10 months ago by WouterDeCoster ♦ 37k
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What to do with unpaired reads post-trimming?
de-novo htseq trimming metagenomic mapping written 11 months ago by willnotburn • 40
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metagenomic assembly has low coverage; what are my options?
assembly trimming metagenomic coverage megahit written 11 months ago by willnotburn • 40 • updated 11 months ago by h.mon ♦ 24k
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5 follow
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Trimming single end reads for STAR?
trimming star rna-seq written 12 months ago by caggtaagtat • 470 • updated 12 months ago by h.mon ♦ 24k
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