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<prev • 173 results • page 1 of 6 • next >
1
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1
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166
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1
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Which adapters to use for trimming?
adapters trimmomatic trimming written 4 weeks ago by Ash • 10 • updated 6 days ago by Biostar ♦♦ 20
2
votes
1
answer
92
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1
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trimming of fasta file
fasta trimming written 7 days ago by harry • 10 • updated 7 days ago by Pierre Lindenbaum ♦ 133k
3
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0
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124
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FASTQC after trimming: how do I know if it is good enough to proceed to alignment?
trimming per base sequence content fastqc written 25 days ago by Ash • 10
0
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1
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157
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1
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Trimming reads using ivar - assembly of sars-cov-2 genome
trimming ivar sars-cov-2 written 4 weeks ago by fhsantanna • 490
12
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2
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2.1k
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7 follow
2
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Adapter trimming of small RNAseq data
adapter smallrnaseq trimming rna-seq written 2.5 years ago by MAPK • 1.7k • updated 5 weeks ago by Biostar ♦♦ 20
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132
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Using Parallel GNU
trimming parallel unix written 7 weeks ago by Ash • 10 • updated 7 weeks ago by _r_am ♦ 32k
3
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0
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194
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5 follow
0
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Is trimming necessary for RNAseq?
trimming rna-seq fastqc written 9 weeks ago by Nish314 • 0
3
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3
answers
187
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3
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Tools for hard trimming?
trimming bbmap written 9 weeks ago by v.berriosfarias • 10 • updated 9 weeks ago by 5heikki ♦ 9.2k
3
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0
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241
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Tool: Trimviz, a lightweight QC tool to assess impact of read-trimming and aligner soft-clipping
trimming tool fastq clipping alignment qc written 12 weeks ago by stuart archer • 70
4
votes
1
answer
390
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1
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Trimming P5 and P7 dual index adapters (and other QC)
trimming qc sequencing written 3 months ago by willnotburn • 40 • updated 3 months ago by GenoMax ♦ 95k
11
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1
answer
316
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5 follow
1
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comparing softwares for trimming adaptors
adaptors trimmomatic trimming cutadapt written 3 months ago by gubrins • 60
6
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1
answer
341
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1
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Trimming Illumina universal adapters using cutadapt proving insufficient
adapters trimming rna-seq cutadapt written 3 months ago by jleehan • 40
0
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195
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Should trimming of contaminants be done if the assembled sequence contains the vector sequences same as that of the reference genome
assembly trimming vecscreen contaminants wgs written 5 months ago by rajeefa • 10 • updated 5 months ago by h.mon ♦ 32k
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200
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Remove reads where quality score length does not equal sequence length
alignment trimming sequence sam quality score written 6 months ago by elisobel • 0
6
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1
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394
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1
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News: NCBI wants to remove quality scores from SRA
sra trimming assembly quality scores genome news written 6 months ago by zhousun21 • 20 • updated 6 months ago by GenoMax ♦ 95k
2
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1
answer
162
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1
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Different trimming for different batches within the same experiment
trimming rna-seq written 6 months ago by Mozart • 240
1
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0
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195
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0
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Trimming tool for Ion Torrent AmpliSeq data
ion torrent trimming tool written 7 months ago by sarastrafella.ss • 0 • updated 7 months ago by ATpoint ♦ 44k
0
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0
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313
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Why the Trimmomatic does not remove some adapters? How do I add a new sequence to be removed?
trimmomatic trimming illumina adapters written 7 months ago by belenescobari • 0
3
votes
1
answer
1.9k
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1
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Cutadapt for paired end RRBS data
trimming rrbs cutadapt written 2.6 years ago by anikb • 20 • updated 8 months ago by Biostar ♦♦ 20
5
votes
1
answer
154
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1
answer
Complex string filtering with python for gene tree phylogeny
python trimming written 9 months ago by mdgn • 10 • updated 9 months ago by JC ♦ 12k
0
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0
answers
411
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0
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Trimmomatic job won't end
software error trimming rna-seq written 9 months ago by James Clark • 0 • updated 9 months ago by Biostar ♦♦ 20
0
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0
answers
218
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0
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Trimming/masking ambiguous codon positions from nucleotide sequences
nucleotide fasta codon trimming masking written 9 months ago by john.soghigian • 0
10
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3
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526
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8 follow
3
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 19 months ago by Mozart • 240 • updated 9 months ago by swbarnes2 ♦ 9.4k
7
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2
answers
1.1k
views
6 follow
2
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Illumina index adapter trimming of FASTQ files using Cutadapt/TrimGalore
trimming cutadapt index adapter rna-seq trimgalore written 10 months ago by arctic • 20
1
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2
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404
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2
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Trimming fastq up until a sequence
trimming fastq sequencing written 11 months ago by SemiQuant • 70
0
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0
answers
247
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0
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prinseq and sickle
installation trimming sequencing written 12 months ago by kanyerezi30 • 0
4
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7
answers
11k
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7
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Best trimming tool
trimming written 4.9 years ago by int11ap1 • 420 • updated 13 months ago by Lakshman Teja • 40
1
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0
answers
506
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0
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Extract gRNA sequence using cutadapt
crispr trimming cutadapt sequencing written 14 months ago by Swimming bird • 20
9
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0
answers
2.2k
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6 follow
0
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Trimmomatic: Higher number of "forward only" than "reverse only" surviving reads
trimming rna-seq written 2.5 years ago by Lucila • 20 • updated 14 months ago by nidhi.vijayan13 • 20
1
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1
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517
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1
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Is read trimming needed for WGBS (bisulfite) data?
bisufite trimming alignment wgbs written 14 months ago by Chris Miller ♦ 21k • updated 14 months ago by Devon Ryan ♦ 98k
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