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2
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51
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Extract gRNA sequence using cutadapt
crispr trimming cutadapt sequencing written 15 hours ago by Swimming bird • 20
9
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0
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1.1k
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6 follow
0
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Trimmomatic: Higher number of "forward only" than "reverse only" surviving reads
trimming rna-seq written 15 months ago by Lucila • 20 • updated 3 days ago by nidhi.vijayan13 • 10
1
vote
1
answer
67
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1
answer
Is read trimming needed for WGBS (bisulfite) data?
bisufite trimming alignment wgbs written 10 days ago by Chris Miller ♦ 21k • updated 4 days ago by Devon Ryan ♦ 92k
4
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2
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136
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5 follow
2
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Trim adapter of undefined length
adapter trimming short read written 27 days ago by julia.mir • 0 • updated 27 days ago by genomax ♦ 74k
1
vote
1
answer
101
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1
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miRNA fastqc sequence length distribution with UMI
qiagene trimming fastqc mirna cutadapt written 5 weeks ago by maria2019 • 50 • updated 5 weeks ago by swbarnes2 ♦ 7.0k
3
votes
2
answers
121
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2
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FASTX Trimming First and Last X Bases
fastq fastx trimming written 7 weeks ago by gtasource • 30 • updated 7 weeks ago by genomax ♦ 74k
1
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0
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195
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0
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BBDuk does not remove all adapters
trimming bbduk rna-seq truseq adapters written 8 weeks ago by f.dinesh • 0 • updated 8 weeks ago by genomax ♦ 74k
1
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1
answer
301
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1
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Length of the amplicon after trimming
trimming written 11 months ago by life99945 • 10 • updated 10 weeks ago by lieven.sterck ♦ 6.3k
3
votes
2
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310
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2
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How to figure out which adapter has been used
adapter trimming degradome written 8 months ago by juan.crescente • 20
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0
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173
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0
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Trimming adaptors with trimmomatic
trimming rna-seq written 4 months ago by Rimma • 20 • updated 4 months ago by h.mon ♦ 28k
0
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0
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133
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0
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Could my primers not have trimmed properly?
dada2 trimming its primer written 4 months ago by k-vincent • 0
6
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2
answers
262
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2
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 4 months ago by Mozart • 140 • updated 4 months ago by genomax ♦ 74k
1
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0
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281
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0
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Removing adaptors from smallRNA seq data
trimming smallrna adaptor written 5 months ago by juan.crescente • 20
2
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2
answers
301
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2
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Find illumina adaptors
rnaseq ilumina trimming cutadapt written 6 months ago by sabaghianamir70 • 10 • updated 5 months ago by chen • 1.9k
1
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1
answer
225
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1
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Trimming adapters required for local alignment?
trimming adapter ngs hicexplorer written 6 months ago by srhic • 0
7
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4
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405
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8 follow
4
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General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 7 months ago by Mozart • 140 • updated 6 months ago by swbarnes2 ♦ 7.0k
3
votes
1
answer
333
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1
answer
reliable way to trim
trimming radseq written 7 months ago by gbl1 • 70 • updated 7 months ago by genomax ♦ 74k
0
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1
answer
318
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1
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working with Sanger fasta + qual + clip files
sanger trimming fastq written 8 months ago by sullis02 • 0 • updated 8 months ago by JC ♦ 9.1k
0
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1
answer
902
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1
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Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 8 months ago by ignazio.fontana • 0
5
votes
1
answer
925
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1
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What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 8 months ago by Gary • 470 • updated 8 months ago by h.mon ♦ 28k
7
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1
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1.3k
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1
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Suggestions for Trimmomatic and "illuminaclip" parameter
trimmomatic trimming illuminaclip rna-seq written 8 months ago by Batu • 170 • updated 8 months ago by caggtaagtat • 860
1
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1
answer
471
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1
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Remove low quality base calls from reads
trimming alignment trim_galore variant calls written 9 months ago by kspata • 60 • updated 9 months ago by manuel.belmadani • 1.1k
0
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0
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574
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0
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PacBio raw data trimming and cleaning
trimming qc cleaning pacbio written 9 months ago by bwczech • 90
5
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1
answer
624
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1
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Trimmomatic "no such file or directory" error with reverse input
trimmomatic trimming written 10 months ago by emilyc • 10 • updated 10 months ago by finswimmer ♦ 12k
1
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0
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677
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0
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trimmomatic: command not found
software error trimming written 11 months ago by SeaStar • 20
0
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0
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358
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0
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Barcode cross contamination
barcode trimming written 11 months ago by Seigfried • 70
0
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0
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296
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0
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Trimmomatic confirmation, multiple indeces per sample?!
trimmomatic rnaseq trimming written 11 months ago by T_18 • 40 • updated 11 months ago by finswimmer ♦ 12k
0
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1
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1.8k
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1
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FastQC report about WGBS.
trimming wgbs written 3.3 years ago by hxlei613 • 90 • updated 13 months ago by Biostar ♦♦ 20
53
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4
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15k
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12 follow
4
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Illumina Trimming Algorithm
python trimming illumina written 9.3 years ago by Science_Robot • 1.1k • updated 14 months ago by RamRS ♦ 24k
1
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0
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683
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0
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Trimming reads based on quality (Phred) scores
reads phredscore trimming qualityscore written 14 months ago by c.clarido • 50
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