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<prev • 143 results • page 1 of 5 • next >
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Could my primers not have trimmed properly?
dada2 trimming its primer written 4 days ago by k-vincent • 0
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144
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 21 days ago by Mozart • 140 • updated 21 days ago by genomax ♦ 69k
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177
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Removing adaptors from smallRNA seq data
trimming smallrna adaptor written 5 weeks ago by juan.crescente • 20
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2
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169
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Find illumina adaptors
rnaseq ilumina trimming cutadapt written 8 weeks ago by sabaghianamir70 • 0 • updated 7 weeks ago by chen • 1.9k
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1
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128
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1
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Trimming adapters required for local alignment?
trimming adapter ngs hicexplorer written 7 weeks ago by srhic • 0
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302
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8 follow
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General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 3 months ago by Mozart • 140 • updated 11 weeks ago by swbarnes2 ♦ 6.0k
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245
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reliable way to trim
trimming radseq written 3 months ago by gbl1 • 70 • updated 3 months ago by genomax ♦ 69k
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219
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1
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working with Sanger fasta + qual + clip files
sanger trimming fastq written 3 months ago by sullis02 • 0 • updated 3 months ago by JC ♦ 8.0k
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1
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201
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1
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How to figure out which adapter has been used
adapter trimming degradome written 3 months ago by juan.crescente • 20 • updated 3 months ago by genomax ♦ 69k
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455
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Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 4 months ago by ignazio.fontana • 0
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1
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What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 4 months ago by Gary • 450 • updated 4 months ago by h.mon ♦ 26k
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1
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Suggestions for Trimmomatic and "illuminaclip" parameter
trimmomatic trimming illuminaclip rna-seq written 4 months ago by Batu • 150 • updated 4 months ago by caggtaagtat • 650
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302
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Remove low quality base calls from reads
trimming alignment trim_galore variant calls written 5 months ago by kspata • 50 • updated 5 months ago by manuel.belmadani • 920
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PacBio raw data trimming and cleaning
trimming qc cleaning pacbio written 5 months ago by bwczech • 70
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1
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420
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1
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Trimmomatic "no such file or directory" error with reverse input
trimmomatic trimming written 6 months ago by emilyc • 0 • updated 6 months ago by finswimmer ♦ 11k
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485
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trimmomatic: command not found
software error trimming written 6 months ago by SeaStar • 10
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271
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Barcode cross contamination
barcode trimming written 7 months ago by Seigfried • 70
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220
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Trimmomatic confirmation, multiple indeces per sample?!
trimmomatic rnaseq trimming written 7 months ago by T_18 • 40 • updated 7 months ago by finswimmer ♦ 11k
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Length of the amplicon after trimming
trimming written 7 months ago by life99945 • 0
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1
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FastQC report about WGBS.
trimming wgbs written 2.9 years ago by hxlei613 • 80 • updated 9 months ago by Biostar ♦♦ 20
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4
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12 follow
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Illumina Trimming Algorithm
python trimming illumina written 9.0 years ago by Science_Robot • 1.1k • updated 10 months ago by RamRS ♦ 22k
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501
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Trimming reads based on quality (Phred) scores
reads phredscore trimming qualityscore written 10 months ago by c.clarido • 50
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507
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FASTQ file: duplicated sequences and overall poor quality
trimming fasqtc trimgalore written 10 months ago by piyushjo • 110
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5 follow
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Trimmomatic: Higher number of "forward only" than "reverse only" surviving reads
trimming rna-seq written 11 months ago by Lucila • 20
9
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2
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When do you strictly need to know the adapter sequence to trim NGS data?
trimming ngs adapter written 11 months ago by MAPK • 1.4k • updated 11 months ago by Gjain ♦ 5.3k
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385
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5 follow
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How do I completely get rid of adapter sequence
trimming smallrnaseq adapter written 11 months ago by MAPK • 1.4k
2
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1
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360
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1
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Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 11 months ago by f.a.galkin • 40 • updated 11 months ago by finswimmer ♦ 11k
5
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1
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364
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1
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Small RNAseq data with untrimmed reads left after trimming process
adapters trimming smallrnaseq rna-seq written 12 months ago by MAPK • 1.4k • updated 12 months ago by h.mon ♦ 26k
2
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1
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475
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1
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How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 12 months ago by MAPK • 1.4k
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5 follow
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Adapter trimming of small RNAseq data
adapter smallrnaseq trimming rna-seq written 12 months ago by MAPK • 1.4k • updated 12 months ago by Brad Langhorst • 110
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