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<prev • 102 results • page 1 of 4 • next >
10
votes
1
answer
244
views
1
answer
"Segmentation fault (core dumped)" using sickle for trimming, depending on options used
trimming virtual-machine sickle written 3 months ago by rioualen • 190
8
votes
1
answer
230
views
1
answer
Additional sequences in adapter file cause trimming problem?
trimmomatic adapter trimming bbtools written 26 days ago by Anand Rao • 100
2
votes
1
answer
218
views
7 follow
1
answer
automated script to trim paired end RNA seq reads using Trimmomatic
trimmomatic loops trimming rna-seq written 4 weeks ago by nikelle.petrillo • 70 • updated 4 weeks ago by h.mon ♦ 8.7k
4
votes
1
answer
355
views
1
answer
Minimum length of reads
reads processing ngs trimming quality written 6 weeks ago by deepti1rao • 0
0
votes
0
answers
191
views
0
answers
k-mer overrepresentation of WGS Illumina reads
k-mer trimmomatic adapter trimming fastqc written 6 weeks ago by Anand Rao • 100
2
votes
2
answers
259
views
2
answers
Tool For Counting Adapter Dimer: I need metrics NOT trimming
adapter dimer adapters trimming dna primer dimer written 7 weeks ago by jnowacki • 0 • updated 7 weeks ago by chen • 970
4
votes
1
answer
235
views
1
answer
Interpreting pre- and post-trim_galore FastQC results
illumina adapter trimming fastqc written 8 weeks ago by Anand Rao • 100 • updated 8 weeks ago by genomax ♦ 33k
9
votes
2
answers
274
views
5 follow
2
answers
Please help me with adapter-trimming
trimming dna written 10 weeks ago by novicebioinforesearcher • 30 • updated 10 weeks ago by Brian Bushnell ♦ 14k
0
votes
1
answer
1.2k
views
1
answer
can anyone give some example codes to remove primer sequence from MiSeq PCR amplicon sequences
illumina trimming miseq written 22 months ago by yiangulo • 0 • updated 3 months ago by WouterDeCoster ♦ 21k
2
votes
1
answer
222
views
5 follow
1
answer
DNA sequences trimming methods
cds trimming sequence dna written 3 months ago by l.souza • 50
0
votes
0
answers
208
views
0
answers
Sliding window in Trimmomatic and PrinSeq
sliding window trimming written 4 months ago by seta • 920
9
votes
5
answers
2.5k
views
6 follow
5
answers
Limiting variant calls to amplicon target regions?
trimming alignment written 2.3 years ago by drollix • 10 • updated 4 months ago by Tommy Au • 40
6
votes
0
answers
532
views
8 follow
0
answers
Differences between trimming tools: cutadapt, bbduk and sickle
trimming bbduk sickle cutadapt written 5 months ago by rioualen • 190
2
votes
1
answer
264
views
1
answer
How to remove adaptors if you don't know their names/sequences? (eg from public data)
adaptors trimmomatic ngs trimming cutadapt written 5 months ago by rioualen • 190 • updated 5 months ago by vchris_ngs • 4.0k
4
votes
2
answers
345
views
2
answers
Trim FASTA header in multifasta file
fasta header trimming sequence written 5 months ago by j.m.carsten • 10 • updated 5 months ago by James Ashmore • 2.0k
0
votes
0
answers
260
views
0
answers
smallRNA - adaptor trimming stringency
adaptors stringency smallrna trimming rna-seq written 7 months ago by ti&te • 0 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
243
views
0
answers
NGS trimming procedure - help required
ngs trimming sequencing written 5 months ago by mxs • 510
3
votes
1
answer
305
views
5 follow
1
answer
TrimGalore parameter form Nextera paired-end reads adapter removal
illumina adapter nextera trimming sequencing written 7 months ago by gundalav • 230 • updated 7 months ago by Devon Ryan ♦ 70k
17
votes
4
answers
636
views
5 follow
4
answers
Fastq Trimmer by pattern
reads fastq trimming terminal written 8 months ago by dzisis1986 • 0
1
vote
1
answer
337
views
1
answer
Custom sequences vs supplied sequences in trimmomatric
adapters trimmomatic trimming written 7 months ago by ofonov • 0 • updated 7 months ago by shunyip • 140
13
votes
0
answers
663
views
12 follow
0
answers
Mask or trim primer sequences in Amplicon sequencing
mask trimming amplicon fastq written 8 months ago by Paul • 700
4
votes
3
answers
1.4k
views
6 follow
3
answers
Trimming TruSeq Universal Adapter (Trimmomatic)
trimmomatic fastq trimming rna-seq written 9 months ago by ZheFrench • 50 • updated 9 months ago by mastal511 • 1.7k
3
votes
1
answer
384
views
1
answer
Cutadapt: How to write the trimmed sequences to file
trimming cutadapt written 9 months ago by ssm87 • 0
2
votes
1
answer
553
views
5 follow
1
answer
How to remove adapters from DNA-seq illumina reads?
trimming sequencing written 9 months ago by hed.robin • 20 • updated 9 months ago by Macspider • 1.5k
1
vote
0
answers
529
views
0
answers
rna seq data trim by trimmomatic
trimming commands rna-seq written 10 months ago by zh.khodadadi • 0
3
votes
1
answer
292
views
1
answer
keeping trimmed edges
trimming written 11 months ago by blur • 50 • updated 11 months ago by Devon Ryan ♦ 70k
0
votes
0
answers
536
views
0
answers
CRISPR screen Trimming with mageck low mappability
crispr screen trimming mapping written 14 months ago by morovatunc • 360 • updated 12 months ago by Biostar ♦♦ 20
1
vote
3
answers
623
views
3
answers
unpaired R1 and R2 sequences
trimmomatic trimming pair-end written 12 months ago by kamiljaron • 70 • updated 12 months ago by Brian Bushnell ♦ 14k
0
votes
1
answer
656
views
1
answer
FastQC report about WGBS.
trimming wgbs written 13 months ago by hxlei613 • 70
1
vote
3
answers
559
views
3
answers
Paired-end RNA Seq data: How to deal with unpaired data after trimmomatic
trimming rna-seq written 13 months ago by aggregatibacter • 80 • updated 13 months ago by igor • 4.5k
<prev • 102 results • page 1 of 4 • next >
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