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<prev • 124 results • page 1 of 5 • next >
53
votes
4
answers
13k
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12 follow
4
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Illumina Trimming Algorithm
python trimming illumina written 8.2 years ago by Science_Robot • 1.1k • updated 10 days ago by RamRS ♦ 17k
1
vote
0
answers
97
views
0
answers
Trimming reads based on quality (Phred) scores
reads phredscore trimming qualityscore written 13 days ago by cedrickclarido • 0
1
vote
0
answers
139
views
0
answers
FASTQ file: duplicated sequences and overall poor quality
trimming fasqtc trimgalore written 21 days ago by piyushjo • 40
8
votes
0
answers
204
views
5 follow
0
answers
Trimmomatic: Higher number of "forward only" than "reverse only" surviving reads
trimming rna-seq written 6 weeks ago by Lucila • 10
6
votes
2
answers
169
views
2
answers
When do you strictly need to know the adapter sequence to trim NGS data?
trimming ngs adapter written 8 weeks ago by MAPK • 1.3k • updated 8 weeks ago by Gjain ♦ 5.2k
5
votes
1
answer
168
views
5 follow
1
answer
How do I completely get rid of adapter sequence
trimming smallrnaseq adapter written 8 weeks ago by MAPK • 1.3k
2
votes
1
answer
141
views
1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 9 weeks ago by f.a.galkin • 0 • updated 9 weeks ago by finswimmer ♦ 5.5k
5
votes
1
answer
149
views
1
answer
Small RNAseq data with untrimmed reads left after trimming process
adapters trimming smallrnaseq rna-seq written 9 weeks ago by MAPK • 1.3k • updated 9 weeks ago by h.mon ♦ 19k
2
votes
1
answer
164
views
1
answer
How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 9 weeks ago by MAPK • 1.3k
10
votes
2
answers
306
views
2
answers
Adapter trimming of small RNAseq data
adapter smallrnaseq trimming rna-seq written 9 weeks ago by MAPK • 1.3k • updated 9 weeks ago by Brad Langhorst • 100
1
vote
0
answers
216
views
0
answers
Leftover adapter sequences after Trimmomatic trimming?
trimmomatic adapters trimming rna-seq written 11 weeks ago by annsun89 • 10 • updated 11 weeks ago by genomax ♦ 56k
3
votes
1
answer
328
views
1
answer
Cutadapt for paired end RRBS data
trimming rrbs cutadapt written 3 months ago by bandita.adhikari • 0 • updated 3 months ago by Devon Ryan ♦ 84k
2
votes
0
answers
307
views
6 follow
0
answers
kmer content failling with fastqc
illumina ngs bbduk trimming adaptor trimming written 4 months ago by slimane.khayi • 40
0
votes
1
answer
282
views
1
answer
Poly A trimming from RNA-seq data by bbduk (bbmap package)
polya trimming bbduk bbmap rna-seq written 4 months ago by seta • 1.0k • updated 4 months ago by WouterDeCoster ♦ 32k
0
votes
0
answers
203
views
0
answers
What to do with unpaired reads post-trimming?
de-novo htseq trimming metagenomic mapping written 5 months ago by willnotburn • 40
2
votes
1
answer
312
views
1
answer
metagenomic assembly has low coverage; what are my options?
assembly trimming metagenomic coverage megahit written 5 months ago by willnotburn • 40 • updated 5 months ago by h.mon ♦ 19k
7
votes
2
answers
536
views
2
answers
Trimming single end reads for STAR?
trimming star rna-seq written 6 months ago by caggtaagtat • 290 • updated 6 months ago by h.mon ♦ 19k
3
votes
1
answer
576
views
1
answer
Trimmomatic output: how to include unpaired reads in the assembly?
trimmomatic trimming megahit assembling written 7 months ago by dark.lord • 0
0
votes
0
answers
548
views
0
answers
Cutadapt using issue
trimming trim_galore cutadapt written 9 months ago by woongjaej • 10 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
464
views
0
answers
smRNA-seq adapter trimming cutadapt
illumina trimming smrna-seq cutadapt written 8 months ago by woongjaej • 10
0
votes
2
answers
395
views
2
answers
Remove hundreds of probes
probes trimming written 10 months ago by nbhardwaj • 110 • updated 10 months ago by chen • 1.7k
27
votes
2
answers
6.7k
views
19 follow
2
answers
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 4.3 years ago by Malachi Griffith ♦ 16k • updated 10 months ago by anu014 • 150
3
votes
1
answer
1.2k
views
1
answer
how to remove Overrepresented sequences for paired end with cutadapt?
trimming fastqc paired-end rna-seq cutadapt written 11 months ago by Lila M • 390
0
votes
1
answer
949
views
1
answer
auto trimming of adapter and 6 base normalizing sequence from miRNA reads
adapters trimming microrna written 2.8 years ago by Richard • 550 • updated 11 months ago by Biostar ♦♦ 20
1
vote
1
answer
1.0k
views
1
answer
Ion Torrent data quality trimming
trimming ion-torrent written 12 months ago by vera.korneeva • 0 • updated 12 months ago by 5heikki ♦ 7.6k
10
votes
1
answer
828
views
1
answer
"Segmentation fault (core dumped)" using sickle for trimming, depending on options used
trimming virtual-machine sickle written 15 months ago by rioualen • 280
8
votes
1
answer
759
views
1
answer
Additional sequences in adapter file cause trimming problem?
trimmomatic adapter trimming bbtools written 13 months ago by Anand Rao • 160
2
votes
1
answer
943
views
7 follow
1
answer
automated script to trim paired end RNA seq reads using Trimmomatic
trimmomatic loops trimming rna-seq written 13 months ago by nikelle.petrillo • 80 • updated 13 months ago by h.mon ♦ 19k
4
votes
1
answer
932
views
1
answer
Minimum length of reads
reads processing ngs trimming quality written 13 months ago by deepti1rao • 0
0
votes
0
answers
648
views
0
answers
k-mer overrepresentation of WGS Illumina reads
k-mer trimmomatic adapter trimming fastqc written 13 months ago by Anand Rao • 160
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