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<prev • 166 results • page 1 of 6 • next >
2
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Tool: Trimviz, a lightweight QC tool to assess impact of read-trimming and aligner soft-clipping
trimming tool fastq clipping alignment qc written 3 days ago by stuart archer • 60
4
votes
1
answer
145
views
1
answer
Trimming P5 and P7 dual index adapters (and other QC)
trimming qc sequencing written 16 days ago by willnotburn • 40 • updated 16 days ago by genomax ♦ 91k
11
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1
answer
171
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5 follow
1
answer
comparing softwares for trimming adaptors
adaptors trimmomatic trimming cutadapt written 25 days ago by gabri.mochales • 30
6
votes
1
answer
186
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1
answer
Trimming Illumina universal adapters using cutadapt proving insufficient
adapters trimming rna-seq cutadapt written 5 weeks ago by jleehan • 40
0
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158
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Should trimming of contaminants be done if the assembled sequence contains the vector sequences same as that of the reference genome
assembly trimming vecscreen contaminants wgs written 3 months ago by rajeefa • 10 • updated 3 months ago by h.mon ♦ 31k
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141
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Remove reads where quality score length does not equal sequence length
alignment trimming sequence sam quality score written 3 months ago by elisobel • 0
6
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1
answer
280
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1
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News: NCBI wants to remove quality scores from SRA
sra trimming assembly quality scores genome news written 4 months ago by zhousun21 • 20 • updated 4 months ago by genomax ♦ 91k
2
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1
answer
123
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1
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Different trimming for different batches within the same experiment
trimming rna-seq written 4 months ago by Mozart • 240
1
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142
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Trimming tool for Ion Torrent AmpliSeq data
ion torrent trimming tool written 4 months ago by sarastrafella.ss • 0 • updated 4 months ago by ATpoint ♦ 40k
0
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207
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Why the Trimmomatic does not remove some adapters? How do I add a new sequence to be removed?
trimmomatic trimming illumina adapters written 4 months ago by belenescobari • 0
3
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1
answer
1.8k
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1
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Cutadapt for paired end RRBS data
trimming rrbs cutadapt written 2.4 years ago by anikb • 10 • updated 5 months ago by Biostar ♦♦ 20
5
votes
1
answer
129
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1
answer
Complex string filtering with python for gene tree phylogeny
python trimming written 6 months ago by mdgn • 10 • updated 6 months ago by JC ♦ 12k
0
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330
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Trimmomatic job won't end
software error trimming rna-seq written 7 months ago by James Clark • 0 • updated 6 months ago by Biostar ♦♦ 20
0
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164
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Trimming/masking ambiguous codon positions from nucleotide sequences
nucleotide fasta codon trimming masking written 6 months ago by john.soghigian • 0
10
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3
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475
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8 follow
3
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Forum: Is trimming always better?
trimmomatic trimming qc forum rna-seq written 16 months ago by Mozart • 240 • updated 6 months ago by swbarnes2 ♦ 8.9k
7
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2
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817
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6 follow
2
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Illumina index adapter trimming of FASTQ files using Cutadapt/TrimGalore
trimming cutadapt index adapter rna-seq trimgalore written 7 months ago by arctic • 20
1
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2
answers
297
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2
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Trimming fastq up until a sequence
trimming fastq sequencing written 9 months ago by SemiQuant • 70
0
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201
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prinseq and sickle
installation trimming sequencing written 9 months ago by kanyerezi30 • 0
4
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7
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10k
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7
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Best trimming tool
trimming written 4.7 years ago by int11ap1 • 420 • updated 10 months ago by Lakshman Teja • 40
1
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0
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402
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0
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Extract gRNA sequence using cutadapt
crispr trimming cutadapt sequencing written 11 months ago by Swimming bird • 20
9
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1.9k
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6 follow
0
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Trimmomatic: Higher number of "forward only" than "reverse only" surviving reads
trimming rna-seq written 2.2 years ago by Lucila • 20 • updated 11 months ago by nidhi.vijayan13 • 20
1
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1
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414
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1
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Is read trimming needed for WGBS (bisulfite) data?
bisufite trimming alignment wgbs written 11 months ago by Chris Miller ♦ 21k • updated 11 months ago by Devon Ryan ♦ 97k
4
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2
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342
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5 follow
2
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Trim adapter of undefined length
adapter trimming short read written 12 months ago by julia.mir • 0 • updated 12 months ago by genomax ♦ 91k
1
vote
1
answer
344
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1
answer
miRNA fastqc sequence length distribution with UMI
qiagene trimming fastqc mirna cutadapt written 12 months ago by maria2019 • 100 • updated 12 months ago by swbarnes2 ♦ 8.9k
3
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2
answers
311
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2
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FASTX Trimming First and Last X Bases
fastq fastx trimming written 13 months ago by gtasource • 60 • updated 13 months ago by genomax ♦ 91k
1
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0
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600
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BBDuk does not remove all adapters
trimming bbduk rna-seq truseq adapters written 13 months ago by f.dinesh • 0 • updated 13 months ago by genomax ♦ 91k
2
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1
answer
504
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1
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Length of the amplicon after trimming
trimming written 23 months ago by life99945 • 20 • updated 13 months ago by lieven.sterck ♦ 8.7k
3
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2
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509
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2
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How to figure out which adapter has been used
adapter trimming degradome written 19 months ago by juan.crescente • 40
0
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725
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Trimming adaptors with trimmomatic
trimming rna-seq written 15 months ago by Rimma • 30 • updated 15 months ago by h.mon ♦ 31k
0
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244
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0
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Could my primers not have trimmed properly?
dada2 trimming its primer written 15 months ago by k-vincent • 0
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